GSE100833

A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Microarray Analysis of Human Blood and Intestinal Biopsy Samples from a Phase 2b, Double-blind, Placebo-controlled Study of Ustekinumab in Crohn's Disease

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

1640 case / 77 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
1717 samples
Specimen
Mixed specimen/source
Reported/interpreted study design
Treatment vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Contact name
Submission date
2017-07-05
Last update
2021-07-25
Organization
Icahn School of Medicine at Mount Sinai
Department
Not available
Public date
2017-07-07
Experiment types
Expression profiling by array
Platforms
GPL13158 [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate
Series type
Series
SubSeries
Not available
BioProject
PRJNA393200

Summary

Overall design

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
1717 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Curated expression experiment linkage and source URL.

Expression Atlas accession
E-GEOD-100833
 Available
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

3 linked publications 3 DOIs

Related publications

  1. Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease. Computers in biology and medicine, 2025
  2. Novel candidate drugs in anti-tumor necrosis factor refractory Crohn's diseases: in silico study for drug repositioning. Scientific reports, 2020
  3. Investigating regulatory patterns of NLRP3 Inflammasome features and association with immune microenvironment in Crohn's disease. Frontiers in immunology, 2022
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Mixed specimen/source groups must be separated before analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease Disease context came from Normalization rules.
  • Likely case group Inflamed tissue 1640 samples
  • Likely control group Healthy control 77 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because specimen/source classes are mixed. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Treatment vs control. Specimen: Mixed specimen/source. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease.
  • Processed data is available for downstream review.
  • External evidence: Expression Atlas curated experiment link is available.
  • External evidence: PubMed links 3 publications; 3 DOIs available: PMID 32612148, PMID 36685554, PMID 39894009.
  • Publication context: Novel candidate drugs in anti-tumor necrosis factor refractory Crohn's diseases: in silico study for drug repositioning.. Scientific reports, 2020. PMID 32612148. DOI 10.1038/s41598-020-67801-0.
  • Publication context: Investigating regulatory patterns of NLRP3 Inflammasome features and association with immune microenvironment in Crohn's disease.. Frontiers in immunology, 2022. PMID 36685554. DOI 10.3389/fimmu.2022.1096587.
  • Publication context: Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease.. Computers in biology and medicine, 2025. PMID 39894009. DOI 10.1016/j.compbiomed.2025.109742.

Cautions

  • Downgraded for tissue search because specimen/source classes are mixed.
  • Downgraded for tissue search because it is a treatment/control experiment.
  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Treatment/control experiment downgraded because this ranking targets tumor-vs-normal tissue comparisons.
  • Mixed specimen/source dataset downgraded until tissue samples are clearly separated.
  • Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 8876 fields

Sample Group Preview

showing 100 of 1717 preview rows Show Hide
Study totals: Case 1640 | Control 77 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 100 of 1717 preview rows
Group Role Accession Title Source / characteristics Reason
Inflamed tissue Case GSM2694187 Subject_289-Ascending colon-biopsy_1 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 31; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694188 Subject_74-Ascending colon-biopsy_10 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 51; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694189 Subject_70-Rectum-biopsy_100 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 40; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694190 Subject_231-Rectum-biopsy_101 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 52; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694191 Subject_369-Terminal Ileum-biopsy_102 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 21; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694192 Subject_229-Rectum-biopsy_103 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 44; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694193 Subject_68-Rectum-biopsy_104 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 31; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694194 Subject_127-Rectum-biopsy_105 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 34; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694195 Subject_34-Descending colon-biopsy_106 Descending colon Diagnosis: Inflammatory bowel disease; Tissue: Descending colon; Age (yr): 26; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694196 Subject_40-Descending colon-biopsy_107 Descending colon Diagnosis: Inflammatory bowel disease; Tissue: Descending colon; Age (yr): 38; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694197 Subject_16-Rectum-biopsy_108 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 39; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694198 Subject_101-Terminal Ileum-biopsy_109 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 36; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694199 Subject_21-Ascending colon-biopsy_11 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 20; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694200 Subject_30-Descending colon-biopsy_110 Descending colon Diagnosis: Inflammatory bowel disease; Tissue: Descending colon; Age (yr): 20; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694201 Subject_73-Rectum-biopsy_111 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 63; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694202 Subject_37-Terminal Ileum-biopsy_112 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 27; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694203 Subject_32-Terminal Ileum-biopsy_113 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 55; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694204 Subject_13-Terminal Ileum-biopsy_114 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 65; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694205 Subject_179-Terminal Ileum-biopsy_115 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 60; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694206 Subject_72-Terminal Ileum-biopsy_116 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 35; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694207 Subject_72-Ascending colon-biopsy_117 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 35; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694208 Subject_12-Terminal Ileum-biopsy_118 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 27; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694209 Subject_281-Terminal Ileum-biopsy_119 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 48; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694210 Subject_287-Ascending colon-biopsy_12 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 27; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694211 Subject_232-Rectum-biopsy_120 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 51; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694212 Subject_231-Terminal Ileum-biopsy_121 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 52; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694213 Subject_5-Terminal Ileum-biopsy_122 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 35; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694214 Subject_286-Terminal Ileum-biopsy_123 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 65; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694215 Subject_282-Terminal Ileum-biopsy_124 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): Na; Sex: Na; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694216 Subject_80-Ascending colon-biopsy_125 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 34; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694217 Subject_71-Ascending colon-biopsy_126 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 28; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694218 Subject_74-Terminal Ileum-biopsy_127 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 51; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694219 Subject_288-Terminal Ileum-biopsy_128 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 42; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694220 Subject_181-Terminal Ileum-biopsy_129 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 33; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694221 Subject_370-Ascending colon-biopsy_13 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 26; Sex: M; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694222 Subject_33-Terminal Ileum-biopsy_130 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 36; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694223 Subject_370-Terminal Ileum-biopsy_131 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 26; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694224 Subject_73-Terminal Ileum-biopsy_132 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 63; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694225 Subject_39-Rectum-biopsy_133 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 52; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694226 Subject_36-Terminal Ileum-biopsy_134 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): Na; Sex: Na; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694227 Subject_287-Terminal Ileum-biopsy_135 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 27; Sex: M; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694228 Subject_284-Terminal Ileum-biopsy_136 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 44; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694229 Subject_123-Terminal Ileum-biopsy_137 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 45; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694230 Subject_33-Rectum-biopsy_138 Rectum Diagnosis: Inflammatory bowel disease; Tissue: Rectum; Age (yr): 36; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694231 Subject_21-Terminal Ileum-biopsy_139 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 20; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694232 Subject_21-Ascending colon-biopsy_14 Ascending colon Diagnosis: Inflammatory bowel disease; Tissue: Ascending colon; Age (yr): 20; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694233 Subject_21-Terminal Ileum-biopsy_140 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 20; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694234 Subject_100-Terminal Ileum-biopsy_141 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 41; Sex: F; Inflammation: Inflamed area Case marker detected.
Inflamed tissue Case GSM2694235 Subject_85-Terminal Ileum-biopsy_142 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 39; Sex: F; Inflammation: Non-involved area Case marker detected.
Inflamed tissue Case GSM2694236 Subject_61-Terminal Ileum-biopsy_143 Terminal Ileum Diagnosis: Inflammatory bowel disease; Tissue: Terminal Ileum; Age (yr): 38; Sex: M; Inflammation: Inflamed area Case marker detected.
1590 additional case samples are hidden from this preview.
Healthy control Control GSM3260441 Subject_434-Blood-blood_222 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260449 Subject_445-Blood-blood_230 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260460 Subject_456-Blood-blood_241 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260469 Subject_467-Blood-blood_250 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260479 Subject_477-Blood-blood_260 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260487 Subject_479-Blood-blood_268 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate1; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260509 Subject_472-Blood-blood_290 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260520 Subject_473-Blood-blood_301 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260526 Subject_474-Blood-blood_307 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260535 Subject_475-Blood-blood_316 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260543 Subject_476-Blood-blood_324 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260551 Subject_478-Blood-blood_332 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate8; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260572 Subject_464-Blood-blood_353 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260582 Subject_465-Blood-blood_363 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260590 Subject_466-Blood-blood_371 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260599 Subject_468-Blood-blood_380 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260609 Subject_469-Blood-blood_390 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260618 Subject_470-Blood-blood_399 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260627 Subject_471-Blood-blood_408 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot1-Plate7; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260722 Subject_438-Blood-blood_503 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260731 Subject_439-Blood-blood_512 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260738 Subject_440-Blood-blood_519 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260748 Subject_441-Blood-blood_529 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260759 Subject_442-Blood-blood_540 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260768 Subject_443-Blood-blood_549 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate3; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260791 Subject_451-Blood-blood_572 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260801 Subject_452-Blood-blood_582 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260807 Subject_453-Blood-blood_588 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260816 Subject_454-Blood-blood_597 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260828 Subject_455-Blood-blood_609 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260838 Subject_457-Blood-blood_619 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate5; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260860 Subject_480-Blood-blood_641 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260870 Subject_481-Blood-blood_651 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260880 Subject_482-Blood-blood_661 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260889 Subject_435-Blood-blood_670 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260900 Subject_436-Blood-blood_681 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260909 Subject_437-Blood-blood_690 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate2; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260932 Subject_458-Blood-blood_713 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260942 Subject_459-Blood-blood_723 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260953 Subject_460-Blood-blood_734 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260962 Subject_461-Blood-blood_743 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260972 Subject_462-Blood-blood_753 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3260982 Subject_463-Blood-blood_763 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate6; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261004 Subject_444-Blood-blood_785 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261013 Subject_446-Blood-blood_794 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261024 Subject_447-Blood-blood_805 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261033 Subject_448-Blood-blood_814 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261042 Subject_449-Blood-blood_823 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261054 Subject_450-Blood-blood_835 Blood Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Blood-Lot2-Plate4; Disease: Normal; Visit: Normal; Inflammation: NA; Treatment_group: Normal Explicit characteristic control arm detected.
Healthy control Control GSM3261387 Subject_411-Normal-biopsy_853 Normal Tissue: Blood; Has_technical_duplicate: FALSE; Age: NA; Sex: NA; Batch: Biopsies-B1-Plate1; Disease: Normal; Visit: Normal; Inflammation: Normal; Treatment_group: Normal Explicit characteristic control arm detected.
27 additional control samples are hidden from this preview.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.