Matching samples

GSE102133 · Mucosal gene expression profiling in ileum of patients with Crohn's disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

65 case / 12 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (77)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM2728650

Uncertain

control_01

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • control_01 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
        • control_01 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • control_01 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
          • control_01 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
        Source metadata
        Source name
        Biopsy from normal ileal mucosa of control individual
        Characteristics
        disease: normal; tissue: ileum
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM2728650
        sample_title: control_01
        source_name: Biopsy from normal ileal mucosa of control individual
        characteristics: disease: normal; tissue: ileum

        GSM2728651

        Uncertain

        control_02

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • control_02 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
              • control_02 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • control_02 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                • control_02 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
              Source metadata
              Source name
              Biopsy from normal ileal mucosa of control individual
              Characteristics
              disease: normal; tissue: ileum
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM2728651
              sample_title: control_02
              source_name: Biopsy from normal ileal mucosa of control individual
              characteristics: disease: normal; tissue: ileum

              GSM2728652

              Uncertain

              control_03

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • control_03 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                    • control_03 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • control_03 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                      • control_03 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                    Source metadata
                    Source name
                    Biopsy from normal ileal mucosa of control individual
                    Characteristics
                    disease: normal; tissue: ileum
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM2728652
                    sample_title: control_03
                    source_name: Biopsy from normal ileal mucosa of control individual
                    characteristics: disease: normal; tissue: ileum

                    GSM2728653

                    Uncertain

                    control_04

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • control_04 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                          • control_04 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • control_04 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                            • control_04 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                          Source metadata
                          Source name
                          Biopsy from normal ileal mucosa of control individual
                          Characteristics
                          disease: normal; tissue: ileum
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM2728653
                          sample_title: control_04
                          source_name: Biopsy from normal ileal mucosa of control individual
                          characteristics: disease: normal; tissue: ileum

                          GSM2728654

                          Uncertain

                          control_05

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • control_05 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                • control_05 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • control_05 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                  • control_05 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                Source metadata
                                Source name
                                Biopsy from normal ileal mucosa of control individual
                                Characteristics
                                disease: normal; tissue: ileum
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM2728654
                                sample_title: control_05
                                source_name: Biopsy from normal ileal mucosa of control individual
                                characteristics: disease: normal; tissue: ileum

                                GSM2728655

                                Uncertain

                                control_06

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • control_06 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                      • control_06 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • control_06 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                        • control_06 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                      Source metadata
                                      Source name
                                      Biopsy from normal ileal mucosa of control individual
                                      Characteristics
                                      disease: normal; tissue: ileum
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM2728655
                                      sample_title: control_06
                                      source_name: Biopsy from normal ileal mucosa of control individual
                                      characteristics: disease: normal; tissue: ileum

                                      GSM2728656

                                      Uncertain

                                      control_07

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • control_07 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                            • control_07 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • control_07 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                              • control_07 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                            Source metadata
                                            Source name
                                            Biopsy from normal ileal mucosa of control individual
                                            Characteristics
                                            disease: normal; tissue: ileum
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM2728656
                                            sample_title: control_07
                                            source_name: Biopsy from normal ileal mucosa of control individual
                                            characteristics: disease: normal; tissue: ileum

                                            GSM2728657

                                            Uncertain

                                            control_08

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • control_08 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                  • control_08 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • control_08 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                    • control_08 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                  Source metadata
                                                  Source name
                                                  Biopsy from normal ileal mucosa of control individual
                                                  Characteristics
                                                  disease: normal; tissue: ileum
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM2728657
                                                  sample_title: control_08
                                                  source_name: Biopsy from normal ileal mucosa of control individual
                                                  characteristics: disease: normal; tissue: ileum

                                                  GSM2728658

                                                  Uncertain

                                                  control_09

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • control_09 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                        • control_09 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • control_09 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                          • control_09 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                        Source metadata
                                                        Source name
                                                        Biopsy from normal ileal mucosa of control individual
                                                        Characteristics
                                                        disease: normal; tissue: ileum
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM2728658
                                                        sample_title: control_09
                                                        source_name: Biopsy from normal ileal mucosa of control individual
                                                        characteristics: disease: normal; tissue: ileum

                                                        GSM2728659

                                                        Uncertain

                                                        control_10

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • control_10 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                              • control_10 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • control_10 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                • control_10 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                              Source metadata
                                                              Source name
                                                              Biopsy from normal ileal mucosa of control individual
                                                              Characteristics
                                                              disease: normal; tissue: ileum
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM2728659
                                                              sample_title: control_10
                                                              source_name: Biopsy from normal ileal mucosa of control individual
                                                              characteristics: disease: normal; tissue: ileum

                                                              GSM2728660

                                                              Uncertain

                                                              control_11

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • control_11 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                    • control_11 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • control_11 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                      • control_11 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                    Source metadata
                                                                    Source name
                                                                    Biopsy from normal ileal mucosa of control individual
                                                                    Characteristics
                                                                    disease: normal; tissue: ileum
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM2728660
                                                                    sample_title: control_11
                                                                    source_name: Biopsy from normal ileal mucosa of control individual
                                                                    characteristics: disease: normal; tissue: ileum

                                                                    GSM2728661

                                                                    Uncertain

                                                                    control_12

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • control_12 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                          • control_12 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • control_12 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                            • control_12 Biopsy from normal ileal mucosa of control individual disease: normal; tissue: ileum
                                                                          Source metadata
                                                                          Source name
                                                                          Biopsy from normal ileal mucosa of control individual
                                                                          Characteristics
                                                                          disease: normal; tissue: ileum
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM2728661
                                                                          sample_title: control_12
                                                                          source_name: Biopsy from normal ileal mucosa of control individual
                                                                          characteristics: disease: normal; tissue: ileum

                                                                          GSM2728662

                                                                          Uncertain

                                                                          i0_CD_01

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • i0_CD_01 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                • i0_CD_01 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • i0_CD_01 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                  • i0_CD_01 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                Source metadata
                                                                                Source name
                                                                                Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                Characteristics
                                                                                disease: Crohn's disease; tissue: ileum
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM2728662
                                                                                sample_title: i0_CD_01
                                                                                source_name: Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                GSM2728663

                                                                                Uncertain

                                                                                i0_CD_02

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • i0_CD_02 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                      • i0_CD_02 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • i0_CD_02 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                        • i0_CD_02 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                      Characteristics
                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM2728663
                                                                                      sample_title: i0_CD_02
                                                                                      source_name: Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                      GSM2728664

                                                                                      Uncertain

                                                                                      i0_CD_03

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • i0_CD_03 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                            • i0_CD_03 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • i0_CD_03 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                              • i0_CD_03 Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0) disease: Crohn's disease; tissue: ileum
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                            Characteristics
                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM2728664
                                                                                            sample_title: i0_CD_03
                                                                                            source_name: Biopsy from ileal mucosa of a post-operative CD patient (Rutgeert score i0)
                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                            GSM2728665

                                                                                            Uncertain

                                                                                            late_CD_01

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • late_CD_01 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                  • late_CD_01 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • late_CD_01 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                    • late_CD_01 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  Biopsy from ileal mucosa of a late stage CD patient
                                                                                                  Characteristics
                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM2728665
                                                                                                  sample_title: late_CD_01
                                                                                                  source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                  GSM2728666

                                                                                                  Uncertain

                                                                                                  late_CD_02

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • late_CD_02 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                        • late_CD_02 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • late_CD_02 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                          • late_CD_02 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        Biopsy from ileal mucosa of a late stage CD patient
                                                                                                        Characteristics
                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM2728666
                                                                                                        sample_title: late_CD_02
                                                                                                        source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                        GSM2728667

                                                                                                        Uncertain

                                                                                                        late_CD_03

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • late_CD_03 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                              • late_CD_03 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • late_CD_03 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                • late_CD_03 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              Biopsy from ileal mucosa of a late stage CD patient
                                                                                                              Characteristics
                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM2728667
                                                                                                              sample_title: late_CD_03
                                                                                                              source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                              GSM2728668

                                                                                                              Uncertain

                                                                                                              late_CD_04

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • late_CD_04 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                    • late_CD_04 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • late_CD_04 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                      • late_CD_04 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                    Characteristics
                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM2728668
                                                                                                                    sample_title: late_CD_04
                                                                                                                    source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                    GSM2728669

                                                                                                                    Uncertain

                                                                                                                    late_CD_05

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • late_CD_05 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                          • late_CD_05 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • late_CD_05 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                            • late_CD_05 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                          Characteristics
                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM2728669
                                                                                                                          sample_title: late_CD_05
                                                                                                                          source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                          GSM2728670

                                                                                                                          Uncertain

                                                                                                                          late_CD_06

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • late_CD_06 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                • late_CD_06 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • late_CD_06 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                  • late_CD_06 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                Characteristics
                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM2728670
                                                                                                                                sample_title: late_CD_06
                                                                                                                                source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                GSM2728671

                                                                                                                                Uncertain

                                                                                                                                late_CD_07

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • late_CD_07 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                      • late_CD_07 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • late_CD_07 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                        • late_CD_07 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                      Characteristics
                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM2728671
                                                                                                                                      sample_title: late_CD_07
                                                                                                                                      source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                      GSM2728672

                                                                                                                                      Uncertain

                                                                                                                                      late_CD_08

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • late_CD_08 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                            • late_CD_08 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • late_CD_08 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                              • late_CD_08 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                            Characteristics
                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM2728672
                                                                                                                                            sample_title: late_CD_08
                                                                                                                                            source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                            GSM2728673

                                                                                                                                            Uncertain

                                                                                                                                            late_CD_09

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • late_CD_09 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                  • late_CD_09 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • late_CD_09 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                    • late_CD_09 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                  Characteristics
                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM2728673
                                                                                                                                                  sample_title: late_CD_09
                                                                                                                                                  source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                  GSM2728674

                                                                                                                                                  Uncertain

                                                                                                                                                  late_CD_10

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • late_CD_10 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                        • late_CD_10 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • late_CD_10 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                          • late_CD_10 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                        Characteristics
                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM2728674
                                                                                                                                                        sample_title: late_CD_10
                                                                                                                                                        source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                        GSM2728675

                                                                                                                                                        Uncertain

                                                                                                                                                        late_CD_11

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • late_CD_11 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                              • late_CD_11 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • late_CD_11 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                • late_CD_11 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                              Characteristics
                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM2728675
                                                                                                                                                              sample_title: late_CD_11
                                                                                                                                                              source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                              GSM2728676

                                                                                                                                                              Uncertain

                                                                                                                                                              late_CD_12

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • late_CD_12 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                    • late_CD_12 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • late_CD_12 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                      • late_CD_12 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                    Characteristics
                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM2728676
                                                                                                                                                                    sample_title: late_CD_12
                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                    GSM2728677

                                                                                                                                                                    Uncertain

                                                                                                                                                                    late_CD_13

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • late_CD_13 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                          • late_CD_13 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • late_CD_13 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                            • late_CD_13 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                          Characteristics
                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM2728677
                                                                                                                                                                          sample_title: late_CD_13
                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                          GSM2728678

                                                                                                                                                                          Uncertain

                                                                                                                                                                          late_CD_14

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • late_CD_14 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                • late_CD_14 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • late_CD_14 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                  • late_CD_14 Biopsy from ileal mucosa of a late stage CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                                Characteristics
                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM2728678
                                                                                                                                                                                sample_title: late_CD_14
                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a late stage CD patient
                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                GSM2728679

                                                                                                                                                                                Uncertain

                                                                                                                                                                                new_CD_01

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • new_CD_01 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                      • new_CD_01 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • new_CD_01 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                        • new_CD_01 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM2728679
                                                                                                                                                                                      sample_title: new_CD_01
                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                      GSM2728680

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      new_CD_02

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • new_CD_02 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                            • new_CD_02 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • new_CD_02 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                              • new_CD_02 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM2728680
                                                                                                                                                                                            sample_title: new_CD_02
                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                            GSM2728681

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            new_CD_03

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • new_CD_03 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                  • new_CD_03 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • new_CD_03 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                    • new_CD_03 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM2728681
                                                                                                                                                                                                  sample_title: new_CD_03
                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                  GSM2728682

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  new_CD_04

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • new_CD_04 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                        • new_CD_04 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • new_CD_04 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                          • new_CD_04 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM2728682
                                                                                                                                                                                                        sample_title: new_CD_04
                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                        GSM2728683

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        new_CD_05

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • new_CD_05 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                              • new_CD_05 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • new_CD_05 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                • new_CD_05 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM2728683
                                                                                                                                                                                                              sample_title: new_CD_05
                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                              GSM2728684

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              new_CD_06

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • new_CD_06 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                    • new_CD_06 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • new_CD_06 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                      • new_CD_06 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM2728684
                                                                                                                                                                                                                    sample_title: new_CD_06
                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                    GSM2728685

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    new_CD_07

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • new_CD_07 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                          • new_CD_07 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • new_CD_07 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                            • new_CD_07 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM2728685
                                                                                                                                                                                                                          sample_title: new_CD_07
                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                          GSM2728686

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          new_CD_08

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • new_CD_08 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                • new_CD_08 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • new_CD_08 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                  • new_CD_08 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM2728686
                                                                                                                                                                                                                                sample_title: new_CD_08
                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                GSM2728687

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                new_CD_09

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • new_CD_09 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                      • new_CD_09 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • new_CD_09 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                        • new_CD_09 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM2728687
                                                                                                                                                                                                                                      sample_title: new_CD_09
                                                                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                      GSM2728688

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      new_CD_10

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • new_CD_10 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                            • new_CD_10 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • new_CD_10 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                              • new_CD_10 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM2728688
                                                                                                                                                                                                                                            sample_title: new_CD_10
                                                                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                            GSM2728689

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            new_CD_11

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • new_CD_11 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                  • new_CD_11 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • new_CD_11 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                    • new_CD_11 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM2728689
                                                                                                                                                                                                                                                  sample_title: new_CD_11
                                                                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                  GSM2728690

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  new_CD_12

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • new_CD_12 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                        • new_CD_12 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • new_CD_12 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                          • new_CD_12 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM2728690
                                                                                                                                                                                                                                                        sample_title: new_CD_12
                                                                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                        GSM2728691

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        new_CD_13

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • new_CD_13 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                              • new_CD_13 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • new_CD_13 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                • new_CD_13 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM2728691
                                                                                                                                                                                                                                                              sample_title: new_CD_13
                                                                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                              GSM2728692

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              new_CD_14

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • new_CD_14 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                    • new_CD_14 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • new_CD_14 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                      • new_CD_14 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM2728692
                                                                                                                                                                                                                                                                    sample_title: new_CD_14
                                                                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                    GSM2728693

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    new_CD_15

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • new_CD_15 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                          • new_CD_15 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • new_CD_15 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                            • new_CD_15 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM2728693
                                                                                                                                                                                                                                                                          sample_title: new_CD_15
                                                                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                          GSM2728694

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          new_CD_16

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • new_CD_16 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                • new_CD_16 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • new_CD_16 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                  • new_CD_16 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM2728694
                                                                                                                                                                                                                                                                                sample_title: new_CD_16
                                                                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                GSM2728695

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                new_CD_17

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • new_CD_17 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                      • new_CD_17 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • new_CD_17 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                        • new_CD_17 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM2728695
                                                                                                                                                                                                                                                                                      sample_title: new_CD_17
                                                                                                                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                      GSM2728696

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      new_CD_18

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • new_CD_18 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                            • new_CD_18 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • new_CD_18 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                              • new_CD_18 Biopsy from ileal mucosa of a newly diagnosed CD patient disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM2728696
                                                                                                                                                                                                                                                                                            sample_title: new_CD_18
                                                                                                                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a newly diagnosed CD patient
                                                                                                                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                            GSM2728697

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            POR_CD_01

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • POR_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                  • POR_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • POR_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                    • POR_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM2728697
                                                                                                                                                                                                                                                                                                  sample_title: POR_CD_01
                                                                                                                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                  GSM2728698

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  POR_CD_02

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • POR_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                        • POR_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • POR_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                          • POR_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM2728698
                                                                                                                                                                                                                                                                                                        sample_title: POR_CD_02
                                                                                                                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                        GSM2728699

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        POR_CD_03

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • POR_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                              • POR_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • POR_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                • POR_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM2728699
                                                                                                                                                                                                                                                                                                              sample_title: POR_CD_03
                                                                                                                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                              GSM2728700

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              POR_CD_04

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • POR_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                    • POR_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • POR_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                      • POR_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2728700
                                                                                                                                                                                                                                                                                                                    sample_title: POR_CD_04
                                                                                                                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                    GSM2728701

                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                    POR_CD_05

                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • POR_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                          • POR_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • POR_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                            • POR_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2728701
                                                                                                                                                                                                                                                                                                                          sample_title: POR_CD_05
                                                                                                                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                          GSM2728702

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          POR_CD_06

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • POR_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                • POR_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • POR_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                  • POR_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2728702
                                                                                                                                                                                                                                                                                                                                sample_title: POR_CD_06
                                                                                                                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                GSM2728703

                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                POR_CD_07

                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • POR_CD_07 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                      • POR_CD_07 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • POR_CD_07 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                        • POR_CD_07 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2728703
                                                                                                                                                                                                                                                                                                                                      sample_title: POR_CD_07
                                                                                                                                                                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                      GSM2728704

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      POR_CD_08

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • POR_CD_08 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                            • POR_CD_08 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • POR_CD_08 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                              • POR_CD_08 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2728704
                                                                                                                                                                                                                                                                                                                                            sample_title: POR_CD_08
                                                                                                                                                                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                            GSM2728705

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            POR_CD_09

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • POR_CD_09 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                  • POR_CD_09 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • POR_CD_09 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                    • POR_CD_09 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2728705
                                                                                                                                                                                                                                                                                                                                                  sample_title: POR_CD_09
                                                                                                                                                                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                  GSM2728706

                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                  POR_CD_10

                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • POR_CD_10 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                        • POR_CD_10 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • POR_CD_10 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                          • POR_CD_10 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2728706
                                                                                                                                                                                                                                                                                                                                                        sample_title: POR_CD_10
                                                                                                                                                                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                        GSM2728707

                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                        POR_CD_11

                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • POR_CD_11 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                              • POR_CD_11 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • POR_CD_11 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                • POR_CD_11 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2728707
                                                                                                                                                                                                                                                                                                                                                              sample_title: POR_CD_11
                                                                                                                                                                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                              GSM2728708

                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                              POR_CD_12

                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_12 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_12 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_12 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_12 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2728708
                                                                                                                                                                                                                                                                                                                                                                    sample_title: POR_CD_12
                                                                                                                                                                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                    GSM2728709

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    POR_CD_13

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_13 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_13 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_13 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_13 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2728709
                                                                                                                                                                                                                                                                                                                                                                          sample_title: POR_CD_13
                                                                                                                                                                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                          GSM2728710

                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                          POR_CD_14

                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_14 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_14 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_14 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_14 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2728710
                                                                                                                                                                                                                                                                                                                                                                                sample_title: POR_CD_14
                                                                                                                                                                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                GSM2728711

                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                POR_CD_15

                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_15 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_15 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_15 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_15 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                      Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2728711
                                                                                                                                                                                                                                                                                                                                                                                      sample_title: POR_CD_15
                                                                                                                                                                                                                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                      GSM2728712

                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                      POR_CD_16

                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_16 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_16 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_16 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_16 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                            Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2728712
                                                                                                                                                                                                                                                                                                                                                                                            sample_title: POR_CD_16
                                                                                                                                                                                                                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                            GSM2728713

                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                            POR_CD_17

                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_17 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_17 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_17 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_17 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2728713
                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: POR_CD_17
                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                  GSM2728714

                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                  POR_CD_18

                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_18 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_18 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_18 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_18 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                        Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2728714
                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: POR_CD_18
                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                        GSM2728715

                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                        POR_CD_19

                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_19 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_19 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_19 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_19 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                              Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2728715
                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: POR_CD_19
                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                              GSM2728716

                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                              POR_CD_20

                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_20 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_CD_20 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_20 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_20 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                    Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2728716
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: POR_CD_20
                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2728717

                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                    POR_CD_21

                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_21 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_CD_21 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_21 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_21 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                          Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2728717
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: POR_CD_21
                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2728718

                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                          POR_CD_22

                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_22 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_CD_22 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_22 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_CD_22 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2728718
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: POR_CD_22
                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2728719

                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                POR_CD_23

                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_23 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_CD_23 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_23 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                        • POR_CD_23 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                      Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                      disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2728719
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: POR_CD_23
                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2728720

                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                      POR_CD_24

                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_24 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_CD_24 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_24 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                              • POR_CD_24 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                            Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                            disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2728720
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: POR_CD_24
                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score ≥i2b)
                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2728721

                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                            POR_i1_CD_01

                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_i1_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_i1_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_i1_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_i1_CD_01 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                  disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2728721
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: POR_i1_CD_01
                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2728722

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                  POR_i1_CD_02

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • POR_i1_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • POR_i1_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_i1_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_i1_CD_02 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                        disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2728722
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: POR_i1_CD_02
                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2728723

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                        POR_i1_CD_03

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • POR_i1_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • POR_i1_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_i1_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_i1_CD_03 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                              disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2728723
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: POR_i1_CD_03
                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2728724

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                              POR_i1_CD_04

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_i1_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • POR_i1_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_i1_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • POR_i1_CD_04 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2728724
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: POR_i1_CD_04
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2728725

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    POR_i1_CD_05

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_i1_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • POR_i1_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_i1_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • POR_i1_CD_05 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2728725
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: POR_i1_CD_05
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2728726

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          POR_i1_CD_06

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_i1_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • POR_i1_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_i1_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • POR_i1_CD_06 Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1) disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                disease: Crohn's disease; tissue: ileum
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2728726
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: POR_i1_CD_06
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Biopsy from ileal mucosa of a post-operative recurrent CD patient (Rutgeerts score i1)
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: disease: Crohn's disease; tissue: ileum

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                No excluded samples.