Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

42 case / 11 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 58 samples
Specimen: Tissue
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Denson L
Contact name: Lee Denson
Submission date: 2008-02-22
Last update: 2012-03-19
Organization: CCHMC
Department: Biomedical Informatics
Public date: 2009-03-11
Experiment types: Expression profiling by array
Platforms: GPL5760 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_REFSEQ_8]
Series type: Series
SubSeries: Not available
BioProject: PRJNA107795

Summary

Colon gene expression in human IBD. The three major clinical subsets of Inflammatory Bowel Disease (IBD) include colon-only Crohn's Disease (CD), ileo-colonic CD, and Ulcerative Colitis (UC). These experiments tested differential colon gene expression in these three types of IBD, relative to healthy control samples, and the local degree of mucosal inflammation as measured by the CD Histological Index of Severity (CDHIS). Colon biopsy samples were obtained from IBD patients at diagnosis and during therapy, and healthy controls. The global pattern of gene expression was determined using GeneSpring software, with a focus upon candidate genes identified in a recent genome wide association study in pediatric onset IBD. Data suggested that two of these candidate genes are up regulated in pediatric IBD, partially influenced by local mucosal inflammation. These experiments tested differential colon gene expression in healthy, CD, and UC samples for candidate genes identified in a recent pediatric onset IBD genome wide association study. Keywords: Single time point in CD and UC and healthy controls.

Overall design

Colon RNA was isolated from biopsies obtained from CD and UC at diagnosis and during therapy and healthy controls. Samples were obtained from the most proximal affected segment of colon. Microarray experiments were performed as described in the CCHMC microarray core, and data was analyzed as described above in the summary. The '107' internal control CEL files (for batches 1,2,3,4,5) used for normalization of the Sample VALUEs are also contained within this data set.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 58 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 7 linked publications 7 DOIs Primary publication Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease. Nature genetics, 2008 PubMed DOI Related publications Identification of LPCAT1 as a key biomarker for Crohn's disease based on bioinformatics and machine learnings and experimental verification. Gene, 2024 PubMed DOI Molecular Comparison of Adult and Pediatric Ulcerative Colitis Indicates Broad Similarity of Molecular Pathways in Disease Tissue. Journal of pediatric gastroenterology and nutrition, 2018 PubMed DOI Integrated analysis of multiple microarray studies to establish differential diagnostic models of Crohn's disease and ulcerative colitis based on a metalloproteinase-associated module. Frontiers in immunology, 2022 PubMed DOI Identification of shared gene signatures and molecular mechanisms between chronic kidney disease and ulcerative colitis. Frontiers in immunology, 2023 PubMed DOI Machine learning-based solution reveals cuproptosis features in inflammatory bowel disease. Frontiers in immunology, 2023 PubMed DOI Advances in Inflammatory Bowel Disease Diagnostics: Machine Learning and Genomic Profiling Reveal Key Biomarkers for Early Detection. Diagnostics (Basel, Switzerland), 2024 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

94% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

12/15 pts

All non-excluded samples are assigned; excluded samples should still be confirmed.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Needs review

5 samples have hard exclusion flags in the proposed grouping.

Confirm excluded samples and preserve the reason in the analysis handoff.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Crohn's disease 42 samples
Likely control group Healthy control 11 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Tissue. Comparison suitability: 0%.
Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 7 publications; 7 DOIs available: PMID 18758464, PMID 29401083, PMID 36479126, PMID 36860851, PMID 37275904.
Publication context: Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.. Nature genetics, 2008. PMID 18758464. DOI 10.1038/ng.203.
Publication context: Molecular Comparison of Adult and Pediatric Ulcerative Colitis Indicates Broad Similarity of Molecular Pathways in Disease Tissue.. Journal of pediatric gastroenterology and nutrition, 2018. PMID 29401083. DOI 10.1097/MPG.0000000000001898.
Publication context: Integrated analysis of multiple microarray studies to establish differential diagnostic models of Crohn's disease and ulcerative colitis based on a metalloproteinase-associated module.. Frontiers in immunology, 2022. PMID 36479126. DOI 10.3389/fimmu.2022.1022850.
Publication context: 4 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

197 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM267527 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267528 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267529 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267530 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267531 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267532 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267533 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267534 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267535 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267536 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267537 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267538 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267539 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267540 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267541 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267542 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267543 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267544 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267545 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267546 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267547 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267548 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267549 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267550 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267551 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267552 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267553 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267554 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267555 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267556 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267557 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267558 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267559 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267560 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267561 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267562 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267563 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267564 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267565 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267566 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267567 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267568 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267569 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267570 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267571 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM267584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: human colon sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... keyword match keyword match: microarray

control_type healthy control GSM267564 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl1 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267565 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl2 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267566 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl3 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267567 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl4 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267568 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl5 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267569 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl6 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267570 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl7 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267571 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl8 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl9 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl10 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM267574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl11 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary control type match: healthy control

disease Crohn's disease GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease ulcerative colitis GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM267527 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl1 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267528 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl2 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267529 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl3 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267530 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl4 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267531 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl5 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267532 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl6 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267533 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl7 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267534 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl8 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267535 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl9 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267536 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl10 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267537 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl11 human colon colon-only crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267538 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl12 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267539 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl13 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267540 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Colon-only CD repl14 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267541 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl1 human colon ileo-colonic crohn's disease replicate sample; Batch2 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267542 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl2 human colon ileo-colonic crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267543 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl3 human colon ileo-colonic crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267544 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl4 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267545 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl5 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267546 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl6 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267547 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl7 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267548 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl8 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267549 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl9 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267550 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl10 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267551 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl11 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267552 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl12 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267553 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl13 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267554 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl14 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267555 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl15 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267556 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl16 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267557 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl17 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM267558 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease Ileo-colonic CD repl18 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM267575 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl1 human colon ulcerative colitis replicate sample; Batch2 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267576 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl2 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267577 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl3 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267578 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl4 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267579 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl5 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267580 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl6 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267581 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl7 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267582 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl8 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267583 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl9 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM267584 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative colitis repl10 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary disease match: ulcerative colitis

normal_tissue_type healthy donor tissue GSM267564 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl1 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267565 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl2 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267566 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl3 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267567 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl4 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267568 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl5 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267569 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl6 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267570 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl7 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267571 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl8 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl9 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl10 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM267574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl11 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... keyword match keyword match: homo sapiens

sample_type normal tissue GSM267564 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl1 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267565 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl2 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267566 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl3 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267567 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl4 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267568 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl5 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267569 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl6 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267570 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl7 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267571 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl8 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267572 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl9 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl10 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM267574 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control Healthy control repl11 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary sample type match: healthy control

tissue colon GSE10616 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE10616 dataset_title: Human colon expression in healthy controls, colon-only CD, ileo-colonic CD, and UC organism: Homo sapiens assay_type: microarray proce... controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267527 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl1 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267528 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl2 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267529 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl3 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267530 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl4 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267531 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl5 human colon colon-only crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267532 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl6 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267533 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl7 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267534 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl8 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267535 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl9 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267536 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl10 human colon colon-only crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267537 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl11 human colon colon-only crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267538 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl12 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267539 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl13 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267540 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colon-only CD repl14 human colon colon-only crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267541 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl1 human colon ileo-colonic crohn's disease replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267542 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl2 human colon ileo-colonic crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267543 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl3 human colon ileo-colonic crohn's disease replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267544 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl4 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267545 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl5 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267546 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl6 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267547 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl7 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267548 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl8 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267549 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl9 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267550 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl10 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267551 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl11 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267552 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl12 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267553 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl13 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267554 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl14 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267555 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl15 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267556 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl16 human colon ileo-colonic crohn's disease replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267557 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl17 human colon ileo-colonic crohn's disease replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267558 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ileo-colonic CD repl18 human colon ileo-colonic crohn's disease replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267559 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Internal control repl1 human colon internal control replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267560 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Internal control repl2 human colon internal control replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267561 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Internal control repl3 human colon internal control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267562 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Internal control repl4 human colon internal control replicate sample; Batch3 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267563 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Internal control repl5 human colon internal control replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267564 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl1 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267565 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl2 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267566 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl3 human colon healthy control replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267567 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl4 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267568 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl5 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267569 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl6 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267570 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl7 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267571 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl8 human colon healthy control replicate sample; Batch1 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267572 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl9 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267573 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl10 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267574 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Healthy control repl11 human colon healthy control replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267575 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl1 human colon ulcerative colitis replicate sample; Batch2 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267576 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl2 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267577 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl3 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267578 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl4 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267579 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl5 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267580 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl6 human colon ulcerative colitis replicate sample; Batch4 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267581 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl7 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267582 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl8 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267583 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl9 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM267584 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative colitis repl10 human colon ulcerative colitis replicate sample; Batch5 controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

58 rows shown Show Hide

Study totals: Case 42 | Control 11 | Unassigned 0 | Excluded 5 | Ambiguous 0 58 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Crohn's disease	Case	GSM267527	Colon-only CD repl1	Human colon Colon-only crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267528	Colon-only CD repl2	Human colon Colon-only crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267529	Colon-only CD repl3	Human colon Colon-only crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267530	Colon-only CD repl4	Human colon Colon-only crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267531	Colon-only CD repl5	Human colon Colon-only crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267532	Colon-only CD repl6	Human colon Colon-only crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267533	Colon-only CD repl7	Human colon Colon-only crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267534	Colon-only CD repl8	Human colon Colon-only crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267535	Colon-only CD repl9	Human colon Colon-only crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267536	Colon-only CD repl10	Human colon Colon-only crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267537	Colon-only CD repl11	Human colon Colon-only crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267538	Colon-only CD repl12	Human colon Colon-only crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267539	Colon-only CD repl13	Human colon Colon-only crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267540	Colon-only CD repl14	Human colon Colon-only crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267541	Ileo-colonic CD repl1	Human colon Ileo-colonic crohn's disease replicate sample; Batch2	Case marker detected.
Crohn's disease	Case	GSM267542	Ileo-colonic CD repl2	Human colon Ileo-colonic crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267543	Ileo-colonic CD repl3	Human colon Ileo-colonic crohn's disease replicate sample; Batch1	Case marker detected.
Crohn's disease	Case	GSM267544	Ileo-colonic CD repl4	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267545	Ileo-colonic CD repl5	Human colon Ileo-colonic crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267546	Ileo-colonic CD repl6	Human colon Ileo-colonic crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267547	Ileo-colonic CD repl7	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267548	Ileo-colonic CD repl8	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267549	Ileo-colonic CD repl9	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267550	Ileo-colonic CD repl10	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267551	Ileo-colonic CD repl11	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Crohn's disease	Case	GSM267552	Ileo-colonic CD repl12	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267553	Ileo-colonic CD repl13	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267554	Ileo-colonic CD repl14	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267555	Ileo-colonic CD repl15	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267556	Ileo-colonic CD repl16	Human colon Ileo-colonic crohn's disease replicate sample; Batch3	Case marker detected.
Crohn's disease	Case	GSM267557	Ileo-colonic CD repl17	Human colon Ileo-colonic crohn's disease replicate sample; Batch4	Case marker detected.
Crohn's disease	Case	GSM267558	Ileo-colonic CD repl18	Human colon Ileo-colonic crohn's disease replicate sample; Batch5	Case marker detected.
Ulcerative colitis	Case	GSM267575	Ulcerative colitis repl1	Human colon Ulcerative colitis replicate sample; Batch2	Case marker detected.
Ulcerative colitis	Case	GSM267576	Ulcerative colitis repl2	Human colon Ulcerative colitis replicate sample; Batch4	Case marker detected.
Ulcerative colitis	Case	GSM267577	Ulcerative colitis repl3	Human colon Ulcerative colitis replicate sample; Batch4	Case marker detected.
Ulcerative colitis	Case	GSM267578	Ulcerative colitis repl4	Human colon Ulcerative colitis replicate sample; Batch4	Case marker detected.
Ulcerative colitis	Case	GSM267579	Ulcerative colitis repl5	Human colon Ulcerative colitis replicate sample; Batch4	Case marker detected.
Ulcerative colitis	Case	GSM267580	Ulcerative colitis repl6	Human colon Ulcerative colitis replicate sample; Batch4	Case marker detected.
Ulcerative colitis	Case	GSM267581	Ulcerative colitis repl7	Human colon Ulcerative colitis replicate sample; Batch5	Case marker detected.
Ulcerative colitis	Case	GSM267582	Ulcerative colitis repl8	Human colon Ulcerative colitis replicate sample; Batch5	Case marker detected.
Ulcerative colitis	Case	GSM267583	Ulcerative colitis repl9	Human colon Ulcerative colitis replicate sample; Batch5	Case marker detected.
Ulcerative colitis	Case	GSM267584	Ulcerative colitis repl10	Human colon Ulcerative colitis replicate sample; Batch5	Case marker detected.
Healthy control	Control	GSM267564	Healthy control repl1	Human colon Healthy control replicate sample; Batch2	Sample-local control marker detected.
Healthy control	Control	GSM267565	Healthy control repl2	Human colon Healthy control replicate sample; Batch2	Sample-local control marker detected.
Healthy control	Control	GSM267566	Healthy control repl3	Human colon Healthy control replicate sample; Batch2	Sample-local control marker detected.
Healthy control	Control	GSM267567	Healthy control repl4	Human colon Healthy control replicate sample; Batch1	Sample-local control marker detected.
Healthy control	Control	GSM267568	Healthy control repl5	Human colon Healthy control replicate sample; Batch1	Sample-local control marker detected.
Healthy control	Control	GSM267569	Healthy control repl6	Human colon Healthy control replicate sample; Batch1	Sample-local control marker detected.
Healthy control	Control	GSM267570	Healthy control repl7	Human colon Healthy control replicate sample; Batch1	Sample-local control marker detected.
Healthy control	Control	GSM267571	Healthy control repl8	Human colon Healthy control replicate sample; Batch1	Sample-local control marker detected.
Healthy control	Control	GSM267572	Healthy control repl9	Human colon Healthy control replicate sample; Batch5	Sample-local control marker detected.
Healthy control	Control	GSM267573	Healthy control repl10	Human colon Healthy control replicate sample; Batch5	Sample-local control marker detected.
Healthy control	Control	GSM267574	Healthy control repl11	Human colon Healthy control replicate sample; Batch5	Sample-local control marker detected.
Excluded: Internal reference	Excluded	GSM267559	Internal control repl1	Human colon Internal control replicate sample; Batch5	internal reference: Internal or common reference sample metadata detected.
Excluded: Internal reference	Excluded	GSM267560	Internal control repl2	Human colon Internal control replicate sample; Batch2	internal reference: Internal or common reference sample metadata detected.
Excluded: Internal reference	Excluded	GSM267561	Internal control repl3	Human colon Internal control replicate sample; Batch1	internal reference: Internal or common reference sample metadata detected.
Excluded: Internal reference	Excluded	GSM267562	Internal control repl4	Human colon Internal control replicate sample; Batch3	internal reference: Internal or common reference sample metadata detected.
Excluded: Internal reference	Excluded	GSM267563	Internal control repl5	Human colon Internal control replicate sample; Batch4	internal reference: Internal or common reference sample metadata detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort