These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Colon biopsy from UC [1B04_14072200007]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869335
sample_title: Colon biopsy from UC [1B04_14072200007]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E4
Colon biopsy from UC [1B06_14072200009]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869336
sample_title: Colon biopsy from UC [1B06_14072200009]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G2
Colon biopsy from UC [1C06_14072200016]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869337
sample_title: Colon biopsy from UC [1C06_14072200016]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B1
Colon biopsy from UC [1C07_14072200017]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869338
sample_title: Colon biopsy from UC [1C07_14072200017]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F2
Colon biopsy from UC [1D06_14072200023]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869339
sample_title: Colon biopsy from UC [1D06_14072200023]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E3
Colon biopsy from UC [1D08_14072200025]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869340
sample_title: Colon biopsy from UC [1D08_14072200025]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F2
Colon biopsy from UC [1F02_14072200033]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869341
sample_title: Colon biopsy from UC [1F02_14072200033]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D1
Colon biopsy from UC [1F06_14072200037]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869342
sample_title: Colon biopsy from UC [1F06_14072200037]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A1
Colon biopsy from UC [1F08_14072200039]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869343
sample_title: Colon biopsy from UC [1F08_14072200039]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D1
Colon biopsy from UC [1G03_14072200041]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869344
sample_title: Colon biopsy from UC [1G03_14072200041]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C1
Colon biopsy from UC [2B11_14072200053]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869345
sample_title: Colon biopsy from UC [2B11_14072200053]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C2
Colon biopsy from UC [2C08_14072200057]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869346
sample_title: Colon biopsy from UC [2C08_14072200057]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D2
Colon biopsy from UC [2D09_14072200065]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869347
sample_title: Colon biopsy from UC [2D09_14072200065]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D2
Colon biopsy from UC [2E06_14072200069]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869348
sample_title: Colon biopsy from UC [2E06_14072200069]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D1
Colon biopsy from UC [2E10_14072200073]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869349
sample_title: Colon biopsy from UC [2E10_14072200073]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E2
Colon biopsy from UC [2F08_14072200078]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869350
sample_title: Colon biopsy from UC [2F08_14072200078]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D2
Colon biopsy from UC [2F10_14072200080]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869351
sample_title: Colon biopsy from UC [2F10_14072200080]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A3
Colon biopsy from UC [2G07_14072200084]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869352
sample_title: Colon biopsy from UC [2G07_14072200084]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F1
Colon biopsy from UC [2G08_14072200085]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869353
sample_title: Colon biopsy from UC [2G08_14072200085]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D1
Colon biopsy from UC [3B06_14072200132]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869354
sample_title: Colon biopsy from UC [3B06_14072200132]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G1
Colon biopsy from UC [3B07_14072200127]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869355
sample_title: Colon biopsy from UC [3B07_14072200127]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D2
Colon biopsy from UC [3B09_14072200131]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869356
sample_title: Colon biopsy from UC [3B09_14072200131]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F1
Colon biopsy from UC [3C04_14072200129]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869357
sample_title: Colon biopsy from UC [3C04_14072200129]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E2
Colon biopsy from UC [3C06_14072200113]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869358
sample_title: Colon biopsy from UC [3C06_14072200113]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B3
Colon biopsy from UC [3C09_14072200122]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869359
sample_title: Colon biopsy from UC [3C09_14072200122]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F2
Colon biopsy from UC [3C10_14072200121]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869360
sample_title: Colon biopsy from UC [3C10_14072200121]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F1
Colon biopsy from UC [3D06_14072200119]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869361
sample_title: Colon biopsy from UC [3D06_14072200119]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E1
Colon biopsy from UC [3D08_14072200112]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869362
sample_title: Colon biopsy from UC [3D08_14072200112]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B2
Colon biopsy from UC [3D09_14072200111]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869363
sample_title: Colon biopsy from UC [3D09_14072200111]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A2
Colon biopsy from UC [3E03_14072200123]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869364
sample_title: Colon biopsy from UC [3E03_14072200123]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E1
Colon biopsy from UC [3F03_14072200130]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869365
sample_title: Colon biopsy from UC [3F03_14072200130]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E1
Colon biopsy from UC [3F05_14072200120]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869366
sample_title: Colon biopsy from UC [3F05_14072200120]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E2
Colon biopsy from UC [3F08_14072200128]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
- Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869367
sample_title: Colon biopsy from UC [3F08_14072200128]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E1
Colon biopsy from UC [3G09_14072200124]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
- Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869368
sample_title: Colon biopsy from UC [3G09_14072200124]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E2
Colon biopsy from UC [1B02_14072200005]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869369
sample_title: Colon biopsy from UC [1B02_14072200005]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A1
Colon biopsy from UC [1B05_14072200008]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869370
sample_title: Colon biopsy from UC [1B05_14072200008]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A4
Colon biopsy from UC [1D02_14072200019]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869371
sample_title: Colon biopsy from UC [1D02_14072200019]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B1
Colon biopsy from UC [1D07_14072200024]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869372
sample_title: Colon biopsy from UC [1D07_14072200024]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D2
Colon biopsy from UC [1G02_14072200040]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869373
sample_title: Colon biopsy from UC [1G02_14072200040]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B2
Colon biopsy from UC [1G05_14072200043]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869374
sample_title: Colon biopsy from UC [1G05_14072200043]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B1
Colon biopsy from UC [2B05_14072200047]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869375
sample_title: Colon biopsy from UC [2B05_14072200047]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A1
Colon biopsy from UC [2B06_14072200048]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869376
sample_title: Colon biopsy from UC [2B06_14072200048]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B2
Colon biopsy from UC [2B09_14072200051]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869377
sample_title: Colon biopsy from UC [2B09_14072200051]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B2
Colon biopsy from UC [2C06_14072200055]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869378
sample_title: Colon biopsy from UC [2C06_14072200055]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A1
Colon biopsy from UC [2C09_14072200058]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869379
sample_title: Colon biopsy from UC [2C09_14072200058]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A2
Colon biopsy from UC [2D06_14072200062]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869380
sample_title: Colon biopsy from UC [2D06_14072200062]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B1
Colon biopsy from UC [2E07_14072200070]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869381
sample_title: Colon biopsy from UC [2E07_14072200070]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A2
Colon biopsy from UC [2E09_14072200072]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869382
sample_title: Colon biopsy from UC [2E09_14072200072]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B1
Colon biopsy from UC [2G11_14072200088]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869383
sample_title: Colon biopsy from UC [2G11_14072200088]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C2
Colon biopsy from UC [3D03_14072200126]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869384
sample_title: Colon biopsy from UC [3D03_14072200126]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B2
Colon biopsy from UC [3E04_14072200114]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869385
sample_title: Colon biopsy from UC [3E04_14072200114]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D1
Colon biopsy from UC [3E05_14072200117]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869386
sample_title: Colon biopsy from UC [3E05_14072200117]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A1
Colon biopsy from UC [3E06_14072200118]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869387
sample_title: Colon biopsy from UC [3E06_14072200118]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A2
Colon biopsy from UC [3F04_14072200125]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
- Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869388
sample_title: Colon biopsy from UC [3F04_14072200125]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C1
Colon biopsy from UC [3F09_14072200115]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869389
sample_title: Colon biopsy from UC [3F09_14072200115]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A2
Colon biopsy from UC [3G04_14072200116]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
- Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869390
sample_title: Colon biopsy from UC [3G04_14072200116]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A3
Colon biopsy from UC [1B08_14072200011]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869391
sample_title: Colon biopsy from UC [1B08_14072200011]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+3
Colon biopsy from UC [1C05_14072200015]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869392
sample_title: Colon biopsy from UC [1C05_14072200015]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+1
Colon biopsy from UC [1C08_14072200018]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869393
sample_title: Colon biopsy from UC [1C08_14072200018]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+2
Colon biopsy from UC [1D03_14072200020]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869394
sample_title: Colon biopsy from UC [1D03_14072200020]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+6
Colon biopsy from UC [1E02_14072200026]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869395
sample_title: Colon biopsy from UC [1E02_14072200026]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+2
Colon biopsy from UC [1E04_14072200028]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869396
sample_title: Colon biopsy from UC [1E04_14072200028]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+5
Colon biopsy from UC [1F05_14072200036]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869397
sample_title: Colon biopsy from UC [1F05_14072200036]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+3
Colon biopsy from UC [1G08_14072200046]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869398
sample_title: Colon biopsy from UC [1G08_14072200046]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+1
Colon biopsy from UC [2B07_14072200049]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869399
sample_title: Colon biopsy from UC [2B07_14072200049]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+6
Colon biopsy from UC [2B08_14072200050]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869400
sample_title: Colon biopsy from UC [2B08_14072200050]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+3
Colon biopsy from UC [2B10_14072200052]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869401
sample_title: Colon biopsy from UC [2B10_14072200052]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+6
Colon biopsy from UC [2C10_14072200059]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869402
sample_title: Colon biopsy from UC [2C10_14072200059]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+2
Colon biopsy from UC [2C11_14072200060]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869403
sample_title: Colon biopsy from UC [2C11_14072200060]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+6
Colon biopsy from UC [2D05_14072200061]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869404
sample_title: Colon biopsy from UC [2D05_14072200061]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+5
Colon biopsy from UC [2D07_14072200063]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869405
sample_title: Colon biopsy from UC [2D07_14072200063]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+5
Colon biopsy from UC [2D10_14072200066]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869406
sample_title: Colon biopsy from UC [2D10_14072200066]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+5
Colon biopsy from UC [2D11_14072200067]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869407
sample_title: Colon biopsy from UC [2D11_14072200067]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+3
Colon biopsy from UC [2E05_14072200068]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869408
sample_title: Colon biopsy from UC [2E05_14072200068]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+2
Colon biopsy from UC [2E08_14072200071]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869409
sample_title: Colon biopsy from UC [2E08_14072200071]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+3
Colon biopsy from UC [2E11_14072200074]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869410
sample_title: Colon biopsy from UC [2E11_14072200074]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+5
Colon biopsy from UC [2F05_14072200075]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869411
sample_title: Colon biopsy from UC [2F05_14072200075]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+1
Colon biopsy from UC [2F07_14072200077]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869412
sample_title: Colon biopsy from UC [2F07_14072200077]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+4
Colon biopsy from UC [2F11_14072200081]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869413
sample_title: Colon biopsy from UC [2F11_14072200081]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+1
Colon biopsy from UC [2G05_14072200082]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869414
sample_title: Colon biopsy from UC [2G05_14072200082]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+1
Colon biopsy from UC [2G06_14072200083]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869415
sample_title: Colon biopsy from UC [2G06_14072200083]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+4
Colon biopsy from UC [2G10_14072200087]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869416
sample_title: Colon biopsy from UC [2G10_14072200087]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+3
Colon biopsy from UC [3B03_14072200101]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869417
sample_title: Colon biopsy from UC [3B03_14072200101]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+6
Colon biopsy from UC [3B05_14072200090]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869418
sample_title: Colon biopsy from UC [3B05_14072200090]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+2
Colon biopsy from UC [3B08_14072200105]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869419
sample_title: Colon biopsy from UC [3B08_14072200105]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+3
Colon biopsy from UC [3B10_14072200102]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869420
sample_title: Colon biopsy from UC [3B10_14072200102]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+4
Colon biopsy from UC [3C03_14072200094]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
- Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869421
sample_title: Colon biopsy from UC [3C03_14072200094]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+4
Colon biopsy from UC [3C07_14072200096]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869422
sample_title: Colon biopsy from UC [3C07_14072200096]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+6
Colon biopsy from UC [3D04_14072200099]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869423
sample_title: Colon biopsy from UC [3D04_14072200099]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+1
Colon biopsy from UC [3D05_14072200106]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869424
sample_title: Colon biopsy from UC [3D05_14072200106]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+4
Colon biopsy from UC [3D07_14072200110]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+6
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869425
sample_title: Colon biopsy from UC [3D07_14072200110]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+6
Colon biopsy from UC [3E07_14072200095]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
- Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869426
sample_title: Colon biopsy from UC [3E07_14072200095]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+4
Colon biopsy from UC [3E08_14072200107]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869427
sample_title: Colon biopsy from UC [3E08_14072200107]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+5
Colon biopsy from UC [3E09_14072200091]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+5
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869428
sample_title: Colon biopsy from UC [3E09_14072200091]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+5
Colon biopsy from UC [3G03_14072200089]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869429
sample_title: Colon biopsy from UC [3G03_14072200089]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+1
Colon biopsy from UC [3G06_14072200109]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
- Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869430
sample_title: Colon biopsy from UC [3G06_14072200109]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+4
Colon biopsy from UC [3G08_14072200100]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
- Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869431
sample_title: Colon biopsy from UC [3G08_14072200100]
source_name: Human Colon Tissue Biopsy_Lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+2
Colon biopsy from UC [1C02_14072200012]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
- Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
- Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869432
sample_title: Colon biopsy from UC [1C02_14072200012]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-3
Colon biopsy from UC [1C03_14072200013]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869433
sample_title: Colon biopsy from UC [1C03_14072200013]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-4
Colon biopsy from UC [1C04_14072200014]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869434
sample_title: Colon biopsy from UC [1C04_14072200014]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-3
Colon biopsy from UC [1D05_14072200022]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869435
sample_title: Colon biopsy from UC [1D05_14072200022]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-4
Colon biopsy from UC [1E03_14072200027]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869436
sample_title: Colon biopsy from UC [1E03_14072200027]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-1
Colon biopsy from UC [1E06_14072200030]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869437
sample_title: Colon biopsy from UC [1E06_14072200030]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-3
Colon biopsy from UC [1E07_14072200031]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869438
sample_title: Colon biopsy from UC [1E07_14072200031]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-4
Colon biopsy from UC [1E08_14072200032]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869439
sample_title: Colon biopsy from UC [1E08_14072200032]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-2
Colon biopsy from UC [1F07_14072200038]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869440
sample_title: Colon biopsy from UC [1F07_14072200038]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-1
Colon biopsy from UC [1G04_14072200042]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869441
sample_title: Colon biopsy from UC [1G04_14072200042]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-1
Colon biopsy from UC [1G06_14072200044]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869442
sample_title: Colon biopsy from UC [1G06_14072200044]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-2
Colon biopsy from UC [1G07_14072200045]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869443
sample_title: Colon biopsy from UC [1G07_14072200045]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-3
Colon biopsy from UC [2C07_14072200056]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869444
sample_title: Colon biopsy from UC [2C07_14072200056]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-4
Colon biopsy from UC [2D08_14072200064]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869445
sample_title: Colon biopsy from UC [2D08_14072200064]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-1
Colon biopsy from UC [2F09_14072200079]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
- Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
- Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869446
sample_title: Colon biopsy from UC [2F09_14072200079]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-4
Colon biopsy from UC [2G09_14072200086]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
- Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-1
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869447
sample_title: Colon biopsy from UC [2G09_14072200086]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-1
Colon biopsy from UC [3B04_14072200092]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869448
sample_title: Colon biopsy from UC [3B04_14072200092]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-2
Colon biopsy from UC [3C08_14072200097]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869449
sample_title: Colon biopsy from UC [3C08_14072200097]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-2
Colon biopsy from UC [3F06_14072200098]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869450
sample_title: Colon biopsy from UC [3F06_14072200098]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-3
Colon biopsy from UC [3F07_14072200093]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
- Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-4
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869451
sample_title: Colon biopsy from UC [3F07_14072200093]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-4
Colon biopsy from UC [3G05_14072200104]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-3
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869452
sample_title: Colon biopsy from UC [3G05_14072200104]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-3
Colon biopsy from UC [3G07_14072200103]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
- Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
Source metadata
- Source name
- Human Colon Tissue Biopsy_Non-lesional
- Characteristics
- patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-2
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM2869453
sample_title: Colon biopsy from UC [3G07_14072200103]
source_name: Human Colon Tissue Biopsy_Non-lesional
characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-2