Matching samples

GSE107499 · Expression data from Ulcerative Colitis subjects

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

75 case / 44 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (119)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM2869335

Uncertain

Colon biopsy from UC [1B04_14072200007]

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
        • Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
          • Colon biopsy from UC [1B04_14072200007] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
        Source metadata
        Source name
        Human Colon Tissue Biopsy_Lesional
        Characteristics
        patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E4
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM2869335
        sample_title: Colon biopsy from UC [1B04_14072200007]
        source_name: Human Colon Tissue Biopsy_Lesional
        characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E4

        GSM2869336

        Uncertain

        Colon biopsy from UC [1B06_14072200009]

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
              • Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                • Colon biopsy from UC [1B06_14072200009] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
              Source metadata
              Source name
              Human Colon Tissue Biopsy_Lesional
              Characteristics
              patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G2
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM2869336
              sample_title: Colon biopsy from UC [1B06_14072200009]
              source_name: Human Colon Tissue Biopsy_Lesional
              characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G2

              GSM2869337

              Uncertain

              Colon biopsy from UC [1C06_14072200016]

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                    • Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                      • Colon biopsy from UC [1C06_14072200016] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                    Source metadata
                    Source name
                    Human Colon Tissue Biopsy_Lesional
                    Characteristics
                    patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B1
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM2869337
                    sample_title: Colon biopsy from UC [1C06_14072200016]
                    source_name: Human Colon Tissue Biopsy_Lesional
                    characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B1

                    GSM2869338

                    Uncertain

                    Colon biopsy from UC [1C07_14072200017]

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                          • Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                            • Colon biopsy from UC [1C07_14072200017] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                          Source metadata
                          Source name
                          Human Colon Tissue Biopsy_Lesional
                          Characteristics
                          patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F2
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM2869338
                          sample_title: Colon biopsy from UC [1C07_14072200017]
                          source_name: Human Colon Tissue Biopsy_Lesional
                          characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F2

                          GSM2869339

                          Uncertain

                          Colon biopsy from UC [1D06_14072200023]

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                • Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                  • Colon biopsy from UC [1D06_14072200023] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                Source metadata
                                Source name
                                Human Colon Tissue Biopsy_Lesional
                                Characteristics
                                patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E3
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM2869339
                                sample_title: Colon biopsy from UC [1D06_14072200023]
                                source_name: Human Colon Tissue Biopsy_Lesional
                                characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E3

                                GSM2869340

                                Uncertain

                                Colon biopsy from UC [1D08_14072200025]

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                      • Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                        • Colon biopsy from UC [1D08_14072200025] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                      Source metadata
                                      Source name
                                      Human Colon Tissue Biopsy_Lesional
                                      Characteristics
                                      patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F2
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM2869340
                                      sample_title: Colon biopsy from UC [1D08_14072200025]
                                      source_name: Human Colon Tissue Biopsy_Lesional
                                      characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F2

                                      GSM2869341

                                      Uncertain

                                      Colon biopsy from UC [1F02_14072200033]

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                            • Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                              • Colon biopsy from UC [1F02_14072200033] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                            Source metadata
                                            Source name
                                            Human Colon Tissue Biopsy_Lesional
                                            Characteristics
                                            patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D1
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM2869341
                                            sample_title: Colon biopsy from UC [1F02_14072200033]
                                            source_name: Human Colon Tissue Biopsy_Lesional
                                            characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D1

                                            GSM2869342

                                            Uncertain

                                            Colon biopsy from UC [1F06_14072200037]

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                  • Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                    • Colon biopsy from UC [1F06_14072200037] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                  Source metadata
                                                  Source name
                                                  Human Colon Tissue Biopsy_Lesional
                                                  Characteristics
                                                  patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A1
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM2869342
                                                  sample_title: Colon biopsy from UC [1F06_14072200037]
                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                  characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A1

                                                  GSM2869343

                                                  Uncertain

                                                  Colon biopsy from UC [1F08_14072200039]

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                        • Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                          • Colon biopsy from UC [1F08_14072200039] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                        Source metadata
                                                        Source name
                                                        Human Colon Tissue Biopsy_Lesional
                                                        Characteristics
                                                        patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D1
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM2869343
                                                        sample_title: Colon biopsy from UC [1F08_14072200039]
                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                        characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D1

                                                        GSM2869344

                                                        Uncertain

                                                        Colon biopsy from UC [1G03_14072200041]

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                              • Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                • Colon biopsy from UC [1G03_14072200041] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                              Source metadata
                                                              Source name
                                                              Human Colon Tissue Biopsy_Lesional
                                                              Characteristics
                                                              patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C1
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM2869344
                                                              sample_title: Colon biopsy from UC [1G03_14072200041]
                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                              characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C1

                                                              GSM2869345

                                                              Uncertain

                                                              Colon biopsy from UC [2B11_14072200053]

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                    • Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                      • Colon biopsy from UC [2B11_14072200053] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                    Source metadata
                                                                    Source name
                                                                    Human Colon Tissue Biopsy_Lesional
                                                                    Characteristics
                                                                    patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C2
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM2869345
                                                                    sample_title: Colon biopsy from UC [2B11_14072200053]
                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                    characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854C2

                                                                    GSM2869346

                                                                    Uncertain

                                                                    Colon biopsy from UC [2C08_14072200057]

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                          • Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                            • Colon biopsy from UC [2C08_14072200057] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                          Source metadata
                                                                          Source name
                                                                          Human Colon Tissue Biopsy_Lesional
                                                                          Characteristics
                                                                          patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D2
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM2869346
                                                                          sample_title: Colon biopsy from UC [2C08_14072200057]
                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                          characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878D2

                                                                          GSM2869347

                                                                          Uncertain

                                                                          Colon biopsy from UC [2D09_14072200065]

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                • Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                  • Colon biopsy from UC [2D09_14072200065] Human Colon Tissue Biopsy_Lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                Source metadata
                                                                                Source name
                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                Characteristics
                                                                                patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D2
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM2869347
                                                                                sample_title: Colon biopsy from UC [2D09_14072200065]
                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8854D2

                                                                                GSM2869348

                                                                                Uncertain

                                                                                Colon biopsy from UC [2E06_14072200069]

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                      • Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                        • Colon biopsy from UC [2E06_14072200069] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                      Characteristics
                                                                                      patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D1
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM2869348
                                                                                      sample_title: Colon biopsy from UC [2E06_14072200069]
                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                      characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D1

                                                                                      GSM2869349

                                                                                      Uncertain

                                                                                      Colon biopsy from UC [2E10_14072200073]

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                            • Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                              • Colon biopsy from UC [2E10_14072200073] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                            Characteristics
                                                                                            patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E2
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM2869349
                                                                                            sample_title: Colon biopsy from UC [2E10_14072200073]
                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                            characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E2

                                                                                            GSM2869350

                                                                                            Uncertain

                                                                                            Colon biopsy from UC [2F08_14072200078]

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                  • Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                    • Colon biopsy from UC [2F08_14072200078] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                  Characteristics
                                                                                                  patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D2
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM2869350
                                                                                                  sample_title: Colon biopsy from UC [2F08_14072200078]
                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                  characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874D2

                                                                                                  GSM2869351

                                                                                                  Uncertain

                                                                                                  Colon biopsy from UC [2F10_14072200080]

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                        • Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                          • Colon biopsy from UC [2F10_14072200080] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                        Characteristics
                                                                                                        patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A3
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM2869351
                                                                                                        sample_title: Colon biopsy from UC [2F10_14072200080]
                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                        characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A3

                                                                                                        GSM2869352

                                                                                                        Uncertain

                                                                                                        Colon biopsy from UC [2G07_14072200084]

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                              • Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                • Colon biopsy from UC [2G07_14072200084] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                              Characteristics
                                                                                                              patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F1
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM2869352
                                                                                                              sample_title: Colon biopsy from UC [2G07_14072200084]
                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                              characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879F1

                                                                                                              GSM2869353

                                                                                                              Uncertain

                                                                                                              Colon biopsy from UC [2G08_14072200085]

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                    • Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                      • Colon biopsy from UC [2G08_14072200085] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                    Characteristics
                                                                                                                    patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D1
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM2869353
                                                                                                                    sample_title: Colon biopsy from UC [2G08_14072200085]
                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                    characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D1

                                                                                                                    GSM2869354

                                                                                                                    Uncertain

                                                                                                                    Colon biopsy from UC [3B06_14072200132]

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                          • Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                            • Colon biopsy from UC [3B06_14072200132] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                          Characteristics
                                                                                                                          patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G1
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM2869354
                                                                                                                          sample_title: Colon biopsy from UC [3B06_14072200132]
                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                          characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881G1

                                                                                                                          GSM2869355

                                                                                                                          Uncertain

                                                                                                                          Colon biopsy from UC [3B07_14072200127]

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                • Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                  • Colon biopsy from UC [3B07_14072200127] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                Characteristics
                                                                                                                                patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D2
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM2869355
                                                                                                                                sample_title: Colon biopsy from UC [3B07_14072200127]
                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879D2

                                                                                                                                GSM2869356

                                                                                                                                Uncertain

                                                                                                                                Colon biopsy from UC [3B09_14072200131]

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                      • Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                        • Colon biopsy from UC [3B09_14072200131] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                      Characteristics
                                                                                                                                      patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F1
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM2869356
                                                                                                                                      sample_title: Colon biopsy from UC [3B09_14072200131]
                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                      characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881F1

                                                                                                                                      GSM2869357

                                                                                                                                      Uncertain

                                                                                                                                      Colon biopsy from UC [3C04_14072200129]

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                            • Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                              • Colon biopsy from UC [3C04_14072200129] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                            Characteristics
                                                                                                                                            patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E2
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM2869357
                                                                                                                                            sample_title: Colon biopsy from UC [3C04_14072200129]
                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                            characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E2

                                                                                                                                            GSM2869358

                                                                                                                                            Uncertain

                                                                                                                                            Colon biopsy from UC [3C06_14072200113]

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                  • Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                    • Colon biopsy from UC [3C06_14072200113] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                  Characteristics
                                                                                                                                                  patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B3
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM2869358
                                                                                                                                                  sample_title: Colon biopsy from UC [3C06_14072200113]
                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                  characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B3

                                                                                                                                                  GSM2869359

                                                                                                                                                  Uncertain

                                                                                                                                                  Colon biopsy from UC [3C09_14072200122]

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                        • Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                          • Colon biopsy from UC [3C09_14072200122] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                        Characteristics
                                                                                                                                                        patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F2
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM2869359
                                                                                                                                                        sample_title: Colon biopsy from UC [3C09_14072200122]
                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                        characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F2

                                                                                                                                                        GSM2869360

                                                                                                                                                        Uncertain

                                                                                                                                                        Colon biopsy from UC [3C10_14072200121]

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                              • Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                • Colon biopsy from UC [3C10_14072200121] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                              Characteristics
                                                                                                                                                              patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F1
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM2869360
                                                                                                                                                              sample_title: Colon biopsy from UC [3C10_14072200121]
                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                              characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874F1

                                                                                                                                                              GSM2869361

                                                                                                                                                              Uncertain

                                                                                                                                                              Colon biopsy from UC [3D06_14072200119]

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                    • Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                      • Colon biopsy from UC [3D06_14072200119] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                    Characteristics
                                                                                                                                                                    patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E1
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM2869361
                                                                                                                                                                    sample_title: Colon biopsy from UC [3D06_14072200119]
                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                    characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E1

                                                                                                                                                                    GSM2869362

                                                                                                                                                                    Uncertain

                                                                                                                                                                    Colon biopsy from UC [3D08_14072200112]

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                          • Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                            • Colon biopsy from UC [3D08_14072200112] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                          Characteristics
                                                                                                                                                                          patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B2
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM2869362
                                                                                                                                                                          sample_title: Colon biopsy from UC [3D08_14072200112]
                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                          characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855B2

                                                                                                                                                                          GSM2869363

                                                                                                                                                                          Uncertain

                                                                                                                                                                          Colon biopsy from UC [3D09_14072200111]

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                • Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                  • Colon biopsy from UC [3D09_14072200111] Human Colon Tissue Biopsy_Lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                Characteristics
                                                                                                                                                                                patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A2
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM2869363
                                                                                                                                                                                sample_title: Colon biopsy from UC [3D09_14072200111]
                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855A2

                                                                                                                                                                                GSM2869364

                                                                                                                                                                                Uncertain

                                                                                                                                                                                Colon biopsy from UC [3E03_14072200123]

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                      • Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                        • Colon biopsy from UC [3E03_14072200123] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E1
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM2869364
                                                                                                                                                                                      sample_title: Colon biopsy from UC [3E03_14072200123]
                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                      characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E1

                                                                                                                                                                                      GSM2869365

                                                                                                                                                                                      Uncertain

                                                                                                                                                                                      Colon biopsy from UC [3F03_14072200130]

                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                            • Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                              • Colon biopsy from UC [3F03_14072200130] Human Colon Tissue Biopsy_Lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E1
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM2869365
                                                                                                                                                                                            sample_title: Colon biopsy from UC [3F03_14072200130]
                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                            characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8881 E1

                                                                                                                                                                                            GSM2869366

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            Colon biopsy from UC [3F05_14072200120]

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                  • Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                    • Colon biopsy from UC [3F05_14072200120] Human Colon Tissue Biopsy_Lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E2
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM2869366
                                                                                                                                                                                                  sample_title: Colon biopsy from UC [3F05_14072200120]
                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                  characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Large; secondary id: 8874 E2

                                                                                                                                                                                                  GSM2869367

                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                  Colon biopsy from UC [3F08_14072200128]

                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                        • Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                          • Colon biopsy from UC [3F08_14072200128] Human Colon Tissue Biopsy_Lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site...
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E1
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM2869367
                                                                                                                                                                                                        sample_title: Colon biopsy from UC [3F08_14072200128]
                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                        characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8879 E1

                                                                                                                                                                                                        GSM2869368

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        Colon biopsy from UC [3G09_14072200124]

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                                              • Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                                                • Colon biopsy from UC [3G09_14072200124] Human Colon Tissue Biopsy_Lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital si...
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E2
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM2869368
                                                                                                                                                                                                              sample_title: Colon biopsy from UC [3G09_14072200124]
                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                              characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8878 E2

                                                                                                                                                                                                              GSM2869369

                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                              Colon biopsy from UC [1B02_14072200005]

                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                    • Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                      • Colon biopsy from UC [1B02_14072200005] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A1
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM2869369
                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [1B02_14072200005]
                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                    characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A1

                                                                                                                                                                                                                    GSM2869370

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    Colon biopsy from UC [1B05_14072200008]

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                          • Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                            • Colon biopsy from UC [1B05_14072200008] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A4
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM2869370
                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [1B05_14072200008]
                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                          characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A4

                                                                                                                                                                                                                          GSM2869371

                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                          Colon biopsy from UC [1D02_14072200019]

                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                • Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                  • Colon biopsy from UC [1D02_14072200019] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B1
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM2869371
                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [1D02_14072200019]
                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B1

                                                                                                                                                                                                                                GSM2869372

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                Colon biopsy from UC [1D07_14072200024]

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                      • Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                        • Colon biopsy from UC [1D07_14072200024] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D2
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM2869372
                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [1D07_14072200024]
                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                      characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D2

                                                                                                                                                                                                                                      GSM2869373

                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                      Colon biopsy from UC [1G02_14072200040]

                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                            • Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                              • Colon biopsy from UC [1G02_14072200040] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B2
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM2869373
                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [1G02_14072200040]
                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                            characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B2

                                                                                                                                                                                                                                            GSM2869374

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            Colon biopsy from UC [1G05_14072200043]

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G05_14072200043] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B1
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM2869374
                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [1G05_14072200043]
                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                  characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B1

                                                                                                                                                                                                                                                  GSM2869375

                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                  Colon biopsy from UC [2B05_14072200047]

                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                        • Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                          • Colon biopsy from UC [2B05_14072200047] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A1
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM2869375
                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2B05_14072200047]
                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                        characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A1

                                                                                                                                                                                                                                                        GSM2869376

                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                        Colon biopsy from UC [2B06_14072200048]

                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                              • Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                              • Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                • Colon biopsy from UC [2B06_14072200048] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B2
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM2869376
                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [2B06_14072200048]
                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                              characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874B2

                                                                                                                                                                                                                                                              GSM2869377

                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                              Colon biopsy from UC [2B09_14072200051]

                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2B09_14072200051] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B2
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM2869377
                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [2B09_14072200051]
                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                    characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878B2

                                                                                                                                                                                                                                                                    GSM2869378

                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                    Colon biopsy from UC [2C06_14072200055]

                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2C06_14072200055] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A1
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM2869378
                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [2C06_14072200055]
                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                          characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A1

                                                                                                                                                                                                                                                                          GSM2869379

                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                          Colon biopsy from UC [2C09_14072200058]

                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2C09_14072200058] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A2
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM2869379
                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [2C09_14072200058]
                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881A2

                                                                                                                                                                                                                                                                                GSM2869380

                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                Colon biopsy from UC [2D06_14072200062]

                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D06_14072200062] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B1
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM2869380
                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [2D06_14072200062]
                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                      characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B1

                                                                                                                                                                                                                                                                                      GSM2869381

                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                      Colon biopsy from UC [2E07_14072200070]

                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2E07_14072200070] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A2
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM2869381
                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [2E07_14072200070]
                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                            characteristics: patient id: BWH10018874; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 21.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 8874A2

                                                                                                                                                                                                                                                                                            GSM2869382

                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                            Colon biopsy from UC [2E09_14072200072]

                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2E09_14072200072] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B1
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869382
                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [2E09_14072200072]
                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                  characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879B1

                                                                                                                                                                                                                                                                                                  GSM2869383

                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [2G11_14072200088]

                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G11_14072200088] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C2
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869383
                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2G11_14072200088]
                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                        characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C2

                                                                                                                                                                                                                                                                                                        GSM2869384

                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [3D03_14072200126]

                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3D03_14072200126] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B2
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869384
                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [3D03_14072200126]
                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                              characteristics: patient id: BWH10018881; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 27.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8881B2

                                                                                                                                                                                                                                                                                                              GSM2869385

                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [3E04_14072200114]

                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3E04_14072200114] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D1
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869385
                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [3E04_14072200114]
                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BWH10018855; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 52.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 8855D1

                                                                                                                                                                                                                                                                                                                    GSM2869386

                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [3E05_14072200117]

                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3E05_14072200117] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A1
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869386
                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [3E05_14072200117]
                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A1

                                                                                                                                                                                                                                                                                                                          GSM2869387

                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [3E06_14072200118]

                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3E06_14072200118] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A2
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869387
                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [3E06_14072200118]
                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BWH10018879; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 45.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8879A2

                                                                                                                                                                                                                                                                                                                                GSM2869388

                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [3F04_14072200125]

                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3F04_14072200125] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hos...
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C1
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869388
                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [3F04_14072200125]
                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BWH10018878; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 29.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 8878C1

                                                                                                                                                                                                                                                                                                                                      GSM2869389

                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [3F09_14072200115]

                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3F09_14072200115] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A2
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869389
                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [3F09_14072200115]
                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A2

                                                                                                                                                                                                                                                                                                                                            GSM2869390

                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [3G04_14072200116]

                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3G04_14072200116] Human Colon Tissue Biopsy_Non-lesional patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospi...
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A3
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869390
                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [3G04_14072200116]
                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BWH10018854; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Brigham and Womens; age: 56.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 8854A3

                                                                                                                                                                                                                                                                                                                                                  GSM2869391

                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [1B08_14072200011]

                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1B08_14072200011] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+3
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869391
                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [1B08_14072200011]
                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+3

                                                                                                                                                                                                                                                                                                                                                        GSM2869392

                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [1C05_14072200015]

                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1C05_14072200015] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+1
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869392
                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [1C05_14072200015]
                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+1

                                                                                                                                                                                                                                                                                                                                                              GSM2869393

                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [1C08_14072200018]

                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1C08_14072200018] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+2
                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869393
                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [1C08_14072200018]
                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+2

                                                                                                                                                                                                                                                                                                                                                                    GSM2869394

                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [1D03_14072200020]

                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1D03_14072200020] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+6
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869394
                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [1D03_14072200020]
                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+6

                                                                                                                                                                                                                                                                                                                                                                          GSM2869395

                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [1E02_14072200026]

                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1E02_14072200026] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+2
                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869395
                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [1E02_14072200026]
                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+2

                                                                                                                                                                                                                                                                                                                                                                                GSM2869396

                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [1E04_14072200028]

                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E04_14072200028] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+5
                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869396
                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [1E04_14072200028]
                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+5

                                                                                                                                                                                                                                                                                                                                                                                      GSM2869397

                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [1F05_14072200036]

                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1F05_14072200036] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+3
                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869397
                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [1F05_14072200036]
                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+3

                                                                                                                                                                                                                                                                                                                                                                                            GSM2869398

                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [1G08_14072200046]

                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G08_14072200046] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+1
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869398
                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [1G08_14072200046]
                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+1

                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869399

                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [2B07_14072200049]

                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2B07_14072200049] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+6
                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869399
                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2B07_14072200049]
                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+6

                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869400

                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [2B08_14072200050]

                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2B08_14072200050] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+3
                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869400
                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [2B08_14072200050]
                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+3

                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869401

                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [2B10_14072200052]

                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2B10_14072200052] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+6
                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869401
                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [2B10_14072200052]
                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+6

                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869402

                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [2C10_14072200059]

                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2C10_14072200059] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+2
                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869402
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [2C10_14072200059]
                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+2

                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869403

                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [2C11_14072200060]

                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2C11_14072200060] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+6
                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869403
                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [2C11_14072200060]
                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+6

                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869404

                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [2D05_14072200061]

                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D05_14072200061] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+5
                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869404
                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [2D05_14072200061]
                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+5

                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869405

                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [2D07_14072200063]

                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2D07_14072200063] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+5
                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869405
                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [2D07_14072200063]
                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+5

                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869406

                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [2D10_14072200066]

                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2D10_14072200066] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+5
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869406
                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [2D10_14072200066]
                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 157+5

                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869407

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [2D11_14072200067]

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2D11_14072200067] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+3
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869407
                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2D11_14072200067]
                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+3

                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869408

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [2E05_14072200068]

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2E05_14072200068] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+2
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869408
                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [2E05_14072200068]
                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+2

                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869409

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [2E08_14072200071]

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2E08_14072200071] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869409
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [2E08_14072200071]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869410

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [2E11_14072200074]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2E11_14072200074] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869410
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [2E11_14072200074]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+5

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869411

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [2F05_14072200075]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2F05_14072200075] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869411
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [2F05_14072200075]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 157+1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869412

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [2F07_14072200077]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2F07_14072200077] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869412
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [2F07_14072200077]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869413

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [2F11_14072200081]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2F11_14072200081] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869413
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [2F11_14072200081]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869414

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [2G05_14072200082]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2G05_14072200082] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869414
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [2G05_14072200082]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869415

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [2G06_14072200083]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G06_14072200083] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869415
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2G06_14072200083]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869416

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [2G10_14072200087]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [2G10_14072200087] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [2G10_14072200087]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869417

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [3B03_14072200101]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3B03_14072200101] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+6
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869417
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [3B03_14072200101]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+6

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869418

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [3B05_14072200090]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3B05_14072200090] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869418
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [3B05_14072200090]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869419

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [3B08_14072200105]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3B08_14072200105] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [3B08_14072200105]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869420

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [3B10_14072200102]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3B10_14072200102] Human Colon Tissue Biopsy_Lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869420
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [3B10_14072200102]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1192+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869421

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [3C03_14072200094]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3C03_14072200094] Human Colon Tissue Biopsy_Lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Ch...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [3C03_14072200094]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 157+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869422

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [3C07_14072200096]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3C07_14072200096] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+6
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [3C07_14072200096]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 877+6

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869423

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [3D04_14072200099]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3D04_14072200099] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [3D04_14072200099]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869424

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [3D05_14072200106]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3D05_14072200106] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [3D05_14072200106]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869425

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [3D07_14072200110]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3D07_14072200110] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+6
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [3D07_14072200110]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+6

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869426

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [3E07_14072200095]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3E07_14072200095] Human Colon Tissue Biopsy_Lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [3E07_14072200095]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 877+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869427

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [3E08_14072200107]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3E08_14072200107] Human Colon Tissue Biopsy_Lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [3E08_14072200107]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1077+5

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869428

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [3E09_14072200091]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3E09_14072200091] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+5
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [3E09_14072200091]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+5

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869429

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [3G03_14072200089]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3G03_14072200089] Human Colon Tissue Biopsy_Lesional patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [3G03_14072200089]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-1120; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Cecum; secondary id: 1120+1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869430

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [3G06_14072200109]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3G06_14072200109] Human Colon Tissue Biopsy_Lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site:...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [3G06_14072200109]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Sigmoid; secondary id: 1214+4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869431

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [3G08_14072200100]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3G08_14072200100] Human Colon Tissue Biopsy_Lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: C...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [3G08_14072200100]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 1057+2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869432

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [1C02_14072200012]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1C02_14072200012] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [1C02_14072200012]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869433

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [1C03_14072200013]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1C03_14072200013] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [1C03_14072200013]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869434

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [1C04_14072200014]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1C04_14072200014] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [1C04_14072200014]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869435

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [1D05_14072200022]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1D05_14072200022] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869435
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [1D05_14072200022]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869436

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [1E03_14072200027]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E03_14072200027] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [1E03_14072200027]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869437

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [1E06_14072200030]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1E06_14072200030] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [1E06_14072200030]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869438

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [1E07_14072200031]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1E07_14072200031] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [1E07_14072200031]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869439

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [1E08_14072200032]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1E08_14072200032] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [1E08_14072200032]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869440

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [1F07_14072200038]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1F07_14072200038] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [1F07_14072200038]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869441

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [1G04_14072200042]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [1G04_14072200042] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [1G04_14072200042]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869442

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [1G06_14072200044]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [1G06_14072200044] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [1G06_14072200044]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869443

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [1G07_14072200045]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [1G07_14072200045] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [1G07_14072200045]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 877-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869444

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [2C07_14072200056]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2C07_14072200056] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [2C07_14072200056]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1192; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 20.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Transverse; secondary id: 1192-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869445

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [2D08_14072200064]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [2D08_14072200064] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [2D08_14072200064]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GSM2869446

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Colon biopsy from UC [2F09_14072200079]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [2F09_14072200079] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospit...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM2869446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  sample_title: Colon biopsy from UC [2F09_14072200079]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  characteristics: patient id: BCH-1214; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 19.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Descending; secondary id: 1214-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GSM2869447

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Colon biopsy from UC [2G09_14072200086]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [2G09_14072200086] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospita...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM2869447
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        sample_title: Colon biopsy from UC [2G09_14072200086]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        characteristics: patient id: BCH-877; Sex: Female; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 13.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 877-1

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GSM2869448

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Colon biopsy from UC [3B04_14072200092]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3B04_14072200092] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM2869448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              sample_title: Colon biopsy from UC [3B04_14072200092]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GSM2869449

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Colon biopsy from UC [3C08_14072200097]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3C08_14072200097] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_accession: GSM2869449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    sample_title: Colon biopsy from UC [3C08_14072200097]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GSM2869450

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Colon biopsy from UC [3F06_14072200098]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3F06_14072200098] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM2869450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          sample_title: Colon biopsy from UC [3F06_14072200098]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          characteristics: patient id: BCH-1057; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1057-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GSM2869451

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Colon biopsy from UC [3F07_14072200093]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • Colon biopsy from UC [3F07_14072200093] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital ...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-4
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_accession: GSM2869451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                sample_title: Colon biopsy from UC [3F07_14072200093]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                characteristics: patient id: BCH-157; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 18.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Rectum; secondary id: 157-4

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GSM2869452

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Colon biopsy from UC [3G05_14072200104]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • Colon biopsy from UC [3G05_14072200104] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-3
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM2869452
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      sample_title: Colon biopsy from UC [3G05_14072200104]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-3

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GSM2869453

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Uncertain

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Colon biopsy from UC [3G07_14072200103]

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              • Colon biopsy from UC [3G07_14072200103] Human Colon Tissue Biopsy_Non-lesional patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital...
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-2
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM2869453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            sample_title: Colon biopsy from UC [3G07_14072200103]
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            source_name: Human Colon Tissue Biopsy_Non-lesional
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            characteristics: patient id: BCH-1077; Sex: Male; disease: Ulcerative Colitis; tissue state: Non-lesional; hospital site: Children's Hospital Boston - Snapper; age: 17.0; hybe kit: Nugen Ovation V2; tissue location: Intestine;Colon;Ascending; secondary id: 1077-2

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            Excluded samples (0)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            No excluded samples.