GSE107865

PBMC gene expression from Crohn's disease patients before Infliximab therapy.

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 22 samples
Specimen: Biofluid
Reported/interpreted study design: Unclear study design Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Gaujoux R, Starosvetsky E, Maimon N, Vallania F, Chowers Y, Khatri P, Shen-Orr SS
Contact name: Shai S Shen-Orr
Submission date: 2017-12-08
Last update: 2019-02-01
Organization: Rappaport Institute of Medical Research, Faculty of Medicine and Faculty of Biology, Technion
Department: Immunology
Public date: 2018-02-01
Experiment types: Expression profiling by array
Platforms: GPL23159 [Clariom_S_Human] Affymetrix Clariom S Assay, Human (Includes Pico Assay)
Series type: Series
SubSeries: Not available
BioProject: PRJNA421740

Summary

About 40% IBD patients treated with anti-TNF antibodies do not respond to therapy. Baseline biomarkers of response are therefore of interest. By combining computational deconvolution of gene expression and meta-analysis approaches we identified cellular biomarkers in tissue (validated in 2 cohorts by IHC of biopsies), and investigated associated gene biomarkers in blood. This dataset provides data from the validation cohort III (blood).

Overall design

Whole blood samples were collected from 22 patients diagnosed with Crohn's disease, just before starting anti-TNF therapy (Infliximab). All patients were naive to anti-TNF. Response to therapy was assessed after 14 weeks based on changes in CRP and Calprotectin, as well as endoscopy (Responders: 17; Non-responders: 5). The prognostic power of genes identified to be related to cellular biomarkers identified from meta-analysis of public datasets of biopsy tissues were investigated.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 22 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 2 linked publications 2 DOIs Primary publication Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD. Gut, 2019 PubMed DOI Related publications Integrated Gene Expression Profiling Analysis Reveals Probable Molecular Mechanism and Candidate Biomarker in Anti-TNFα Non-Response IBD Patients. Journal of inflammation research, 2020 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

93 pts

Clarity: 93%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Only one side of the comparison is clearly grouped. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Not ready

55% DE readiness

Contrast completeness

10/25 pts

Only one side of the contrast is present; downstream DE needs both groups.

Minimum group size

0/20 pts

Minimum group size cannot be evaluated until a complete contrast exists.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

0/10 pts

Critical warnings must be resolved before downstream analysis.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No complete case/control contrast is available.
Critical dataset warnings must be resolved.

Next Steps

Resolve critical warnings before downstream analysis.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Blocked

No complete case/control grouping exists yet.

Review the sample grouping table and assign both case and control groups.

Minimum sample count met

Blocked

At least one group has fewer than 2 samples.

Choose a larger dataset or merge only scientifically valid groups.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

Analysis preparation checklist contains blocked items.

No complete case/control or treatment/control contrast is available.

At least one comparison group has fewer than two samples.

Critical dataset warnings are present.

Assay context may require expert handling before DESeq2-style analysis.

Study design is model-system or unclear and should be reviewed before analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Crohn's disease 22 samples
Likely control group No control group detected 0 samples

Intent Interpretation

Downgrade or exclusion reason Comparison: Unclear study design. Specimen: Biofluid. Comparison suitability: 0%. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease.
Processed data is available for downstream review.
External evidence: PubMed links 2 publications; 2 DOIs available: PMID 29618496, PMID 32104045.
Publication context: Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD.. Gut, 2019. PMID 29618496. DOI 10.1136/gutjnl-2017-315494.
Publication context: Integrated Gene Expression Profiling Analysis Reveals Probable Molecular Mechanism and Candidate Biomarker in Anti-TNFα Non-Response IBD Patients.. Journal of inflammation research, 2020. PMID 32104045. DOI 10.2147/JIR.S236262.

Cautions

Comparison: Unclear study design. Specimen: Biofluid. Comparison suitability: 0%.
Downgraded for tissue search because it is a biofluid cohort.
Downgraded for tissue search because study design or specimen source is unclear.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Missing or unclear metadata. Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Overall score capped because comparison suitability is weak for the selected search intent.
Missing or unclear metadata. Comparison - Unclear study design. Specimen - Biofluid. Comparison suitability: 0%.
Missing or unclear metadata. Downgraded for tissue search because study design or specimen source is unclear.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No clear control group was detected from normalized metadata.
Microarray expression context was detected; compare separately from RNA-seq cohorts.
This record is a third-party integration or reanalysis of public datasets. The GEO sample count may describe deposited atlas records rather than one independent clinical cohort; verify source-study provenance before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.
Patient-tissue tumor-normal intent requires clear tumor-normal grouping.

Normalized Fields

115 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source blood GSM2882184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM2882205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood source_name: peripheral blood mononuclear cells sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE107865 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE107865 dataset_title: PBMC gene expression from Crohn's disease patients before Infliximab therapy. organism: Homo sapiens assay_type: microarray processed... keyword match keyword match: microarray

cell_population peripheral blood mononuclear cells GSM2882184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-42-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-42;time:V1;status:Responder;CRP:3.44;HBI:0;BMI:23.038752362949;status_time:W... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-44-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-44;time:V1;status:Responder;CRP:19.6;HBI:2;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-46-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-46;time:V1;status:Responder;CRP:6.82;HBI:2;BMI:26.643598615917;status_time:W... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-47-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-47;time:V1;status:Responder;CRP:125.7;HBI:6;BMI:21.875;status_time:W14; trea... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-48-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-48;time:V1;status:Responder;CRP:1.8;HBI:0;BMI:23.0400201994698;status_time:W... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-29-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-29;time:V1;status:Responder;CRP:4.9;HBI:0;BMI:21.4995968825585;status_time:W... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-30-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-30;time:V1;status:Non-responder;CRP:15.8;HBI:22;BMI:29.7339004102526;status_... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-31-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-31;time:V1;status:Responder;CRP:44;HBI:7;BMI:22.0385674931129;status_time:W1... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-32-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-32;time:V1;status:Non-responder;CRP:16.5;HBI:NA;BMI:NA;status_time:W14; trea... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-33-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-33;time:V1;status:Responder;CRP:21.17;HBI:4;BMI:18.796189499765;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-35-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-35;time:V1;status:Responder;CRP:27;HBI:1;BMI:19.974407790019;status_time:W14... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-36-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-36;time:V1;status:Non-responder;CRP:82.7;HBI:1;BMI:19.4674012855831;status_t... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-37-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-37;time:V1;status:Responder;CRP:4.26;HBI:13;BMI:23.5102040816327;status_time... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-20-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-20;time:V1;status:Responder;CRP:15.6;HBI:8;BMI:21.295294753921;status_time:W... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-39-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-39;time:V1;status:Responder;CRP:2.62;HBI:0;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-22-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-22;time:V1;status:Responder;CRP:2.16;HBI:4;BMI:20.0183654729109;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-23-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-23;time:V1;status:Non-responder;CRP:5.7;HBI:12;BMI:19.4463667820069;status_t... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-24-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-24;time:V1;status:Responder;CRP:2.44;HBI:1;BMI:24.5674740484429;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-26-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-26;time:V1;status:Non-responder;CRP:3.1;HBI:1;BMI:13.2330451608876;status_ti... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-27-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-27;time:V1;status:Responder;CRP:19.2;HBI:7;BMI:17.2110868084191;status_time:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-28-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-28;time:V1;status:Responder;CRP:1.6;HBI:2;BMI:NA;status_time:W14; treatment:... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

cell_population peripheral blood mononuclear cells GSM2882205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-40-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-40;time:V1;status:Responder;CRP:1;HBI:4;BMI:24.3823729785937;status_time:W14... controlled vocabulary controlled vocabulary cell population match: peripheral blood mononuclear cells

disease Crohn's disease GSE107865 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE107865 dataset_title: PBMC gene expression from Crohn's disease patients before Infliximab therapy. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE107865 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE107865 dataset_title: PBMC gene expression from Crohn's disease patients before Infliximab therapy. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary disease match: ibd

disease Crohn's disease GSM2882184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-42-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-42;time:V1;status:Responder;CRP:3.44;HBI:0;BMI:23.038752362949;status_time:W... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-44-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-44;time:V1;status:Responder;CRP:19.6;HBI:2;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-46-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-46;time:V1;status:Responder;CRP:6.82;HBI:2;BMI:26.643598615917;status_time:W... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-47-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-47;time:V1;status:Responder;CRP:125.7;HBI:6;BMI:21.875;status_time:W14; trea... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-48-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-48;time:V1;status:Responder;CRP:1.8;HBI:0;BMI:23.0400201994698;status_time:W... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-29-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-29;time:V1;status:Responder;CRP:4.9;HBI:0;BMI:21.4995968825585;status_time:W... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-30-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-30;time:V1;status:Non-responder;CRP:15.8;HBI:22;BMI:29.7339004102526;status_... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-31-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-31;time:V1;status:Responder;CRP:44;HBI:7;BMI:22.0385674931129;status_time:W1... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-32-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-32;time:V1;status:Non-responder;CRP:16.5;HBI:NA;BMI:NA;status_time:W14; trea... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-33-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-33;time:V1;status:Responder;CRP:21.17;HBI:4;BMI:18.796189499765;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-35-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-35;time:V1;status:Responder;CRP:27;HBI:1;BMI:19.974407790019;status_time:W14... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-36-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-36;time:V1;status:Non-responder;CRP:82.7;HBI:1;BMI:19.4674012855831;status_t... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-37-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-37;time:V1;status:Responder;CRP:4.26;HBI:13;BMI:23.5102040816327;status_time... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-20-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-20;time:V1;status:Responder;CRP:15.6;HBI:8;BMI:21.295294753921;status_time:W... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-39-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-39;time:V1;status:Responder;CRP:2.62;HBI:0;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-22-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-22;time:V1;status:Responder;CRP:2.16;HBI:4;BMI:20.0183654729109;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-23-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-23;time:V1;status:Non-responder;CRP:5.7;HBI:12;BMI:19.4463667820069;status_t... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-24-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-24;time:V1;status:Responder;CRP:2.44;HBI:1;BMI:24.5674740484429;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-26-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-26;time:V1;status:Non-responder;CRP:3.1;HBI:1;BMI:13.2330451608876;status_ti... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-27-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-27;time:V1;status:Responder;CRP:19.2;HBI:7;BMI:17.2110868084191;status_time:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-28-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-28;time:V1;status:Responder;CRP:1.6;HBI:2;BMI:NA;status_time:W14; treatment:... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2882205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease HR-40-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-40;time:V1;status:Responder;CRP:1;HBI:4;BMI:24.3823729785937;status_time:W14... controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE107865 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE107865 dataset_title: PBMC gene expression from Crohn's disease patients before Infliximab therapy. organism: Homo sapiens assay_type: microarray processed... keyword match keyword match: homo sapiens

specimen_material PBMC preparation GSM2882184 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-42-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-42;time:V1;status:Responder;CRP:3.44;HBI:0;BMI:23.038752362949;status_time:W... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882185 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-44-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-44;time:V1;status:Responder;CRP:19.6;HBI:2;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882186 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-46-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-46;time:V1;status:Responder;CRP:6.82;HBI:2;BMI:26.643598615917;status_time:W... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882187 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-47-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-47;time:V1;status:Responder;CRP:125.7;HBI:6;BMI:21.875;status_time:W14; trea... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882188 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-48-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-48;time:V1;status:Responder;CRP:1.8;HBI:0;BMI:23.0400201994698;status_time:W... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882189 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-29-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-29;time:V1;status:Responder;CRP:4.9;HBI:0;BMI:21.4995968825585;status_time:W... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882190 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-30-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-30;time:V1;status:Non-responder;CRP:15.8;HBI:22;BMI:29.7339004102526;status_... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882191 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-31-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-31;time:V1;status:Responder;CRP:44;HBI:7;BMI:22.0385674931129;status_time:W1... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882192 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-32-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-32;time:V1;status:Non-responder;CRP:16.5;HBI:NA;BMI:NA;status_time:W14; trea... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882193 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-33-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-33;time:V1;status:Responder;CRP:21.17;HBI:4;BMI:18.796189499765;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882194 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-35-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-35;time:V1;status:Responder;CRP:27;HBI:1;BMI:19.974407790019;status_time:W14... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882195 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-36-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-36;time:V1;status:Non-responder;CRP:82.7;HBI:1;BMI:19.4674012855831;status_t... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882196 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-37-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-37;time:V1;status:Responder;CRP:4.26;HBI:13;BMI:23.5102040816327;status_time... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882197 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-20-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-20;time:V1;status:Responder;CRP:15.6;HBI:8;BMI:21.295294753921;status_time:W... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882198 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-39-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-39;time:V1;status:Responder;CRP:2.62;HBI:0;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882199 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-22-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-22;time:V1;status:Responder;CRP:2.16;HBI:4;BMI:20.0183654729109;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882200 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-23-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-23;time:V1;status:Non-responder;CRP:5.7;HBI:12;BMI:19.4463667820069;status_t... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882201 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-24-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-24;time:V1;status:Responder;CRP:2.44;HBI:1;BMI:24.5674740484429;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882202 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-26-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-26;time:V1;status:Non-responder;CRP:3.1;HBI:1;BMI:13.2330451608876;status_ti... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882203 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-27-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-27;time:V1;status:Responder;CRP:19.2;HBI:7;BMI:17.2110868084191;status_time:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882204 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-28-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-28;time:V1;status:Responder;CRP:1.6;HBI:2;BMI:NA;status_time:W14; treatment:... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

specimen_material PBMC preparation GSM2882205 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral blood mononuclear cells HR-40-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-40;time:V1;status:Responder;CRP:1;HBI:4;BMI:24.3823729785937;status_time:W14... controlled vocabulary controlled vocabulary specimen material match: peripheral blood mononuclear cells

tissue blood GSE107865 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE107865 dataset_title: PBMC gene expression from Crohn's disease patients before Infliximab therapy. organism: Homo sapiens assay_type: microarray processed... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882184 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-42-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-42;time:V1;status:Responder;CRP:3.44;HBI:0;BMI:23.038752362949;status_time:W... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882185 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-44-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-44;time:V1;status:Responder;CRP:19.6;HBI:2;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882186 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-46-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-46;time:V1;status:Responder;CRP:6.82;HBI:2;BMI:26.643598615917;status_time:W... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882187 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-47-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-47;time:V1;status:Responder;CRP:125.7;HBI:6;BMI:21.875;status_time:W14; trea... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882188 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-48-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-48;time:V1;status:Responder;CRP:1.8;HBI:0;BMI:23.0400201994698;status_time:W... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882189 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-29-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-29;time:V1;status:Responder;CRP:4.9;HBI:0;BMI:21.4995968825585;status_time:W... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882190 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-30-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-30;time:V1;status:Non-responder;CRP:15.8;HBI:22;BMI:29.7339004102526;status_... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882191 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-31-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-31;time:V1;status:Responder;CRP:44;HBI:7;BMI:22.0385674931129;status_time:W1... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882192 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-32-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-32;time:V1;status:Non-responder;CRP:16.5;HBI:NA;BMI:NA;status_time:W14; trea... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882193 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-33-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-33;time:V1;status:Responder;CRP:21.17;HBI:4;BMI:18.796189499765;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882194 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-35-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-35;time:V1;status:Responder;CRP:27;HBI:1;BMI:19.974407790019;status_time:W14... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882195 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-36-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-36;time:V1;status:Non-responder;CRP:82.7;HBI:1;BMI:19.4674012855831;status_t... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882196 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-37-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-37;time:V1;status:Responder;CRP:4.26;HBI:13;BMI:23.5102040816327;status_time... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882197 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-20-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-20;time:V1;status:Responder;CRP:15.6;HBI:8;BMI:21.295294753921;status_time:W... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882198 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-39-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-39;time:V1;status:Responder;CRP:2.62;HBI:0;BMI:26.6727632982777;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882199 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-22-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-22;time:V1;status:Responder;CRP:2.16;HBI:4;BMI:20.0183654729109;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882200 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-23-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-23;time:V1;status:Non-responder;CRP:5.7;HBI:12;BMI:19.4463667820069;status_t... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882201 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-24-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-24;time:V1;status:Responder;CRP:2.44;HBI:1;BMI:24.5674740484429;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882202 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-26-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-26;time:V1;status:Non-responder;CRP:3.1;HBI:1;BMI:13.2330451608876;status_ti... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882203 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-27-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-27;time:V1;status:Responder;CRP:19.2;HBI:7;BMI:17.2110868084191;status_time:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882204 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-28-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-28;time:V1;status:Responder;CRP:1.6;HBI:2;BMI:NA;status_time:W14; treatment:... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM2882205 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood HR-40-V1 peripheral blood mononuclear cells disease state: Crohn's disease;treatment:none;patient:HR-40;time:V1;status:Responder;CRP:1;HBI:4;BMI:24.3823729785937;status_time:W14... controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

22 rows shown Show Hide

Study totals: Case 22 | Control 0 | Unassigned 0 | Excluded 0 | Ambiguous 0 22 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Crohn's disease	Case	GSM2882184	HR-42-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-42;Time:V1;Status:Responder;CRP:3.44;HBI:0;BMI:23.038752362949;Status_time:W14; Treatment: None; Patient: HR-42; Time: V1; Status: Responder; Crp: 3.44; Hbi: 0; Bmi: 23.038752362949; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882185	HR-44-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-44;Time:V1;Status:Responder;CRP:19.6;HBI:2;BMI:26.6727632982777;Status_time:W14; Treatment: None; Patient: HR-44; Time: V1; Status: Responder; Crp: 19.6; Hbi: 2; Bmi: 26.6727632982777; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882186	HR-46-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-46;Time:V1;Status:Responder;CRP:6.82;HBI:2;BMI:26.643598615917;Status_time:W14; Treatment: None; Patient: HR-46; Time: V1; Status: Responder; Crp: 6.82; Hbi: 2; Bmi: 26.643598615917; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882187	HR-47-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-47;Time:V1;Status:Responder;CRP:125.7;HBI:6;BMI:21.875;Status_time:W14; Treatment: None; Patient: HR-47; Time: V1; Status: Responder; Crp: 125.7; Hbi: 6; Bmi: 21.875; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882188	HR-48-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-48;Time:V1;Status:Responder;CRP:1.8;HBI:0;BMI:23.0400201994698;Status_time:W14; Treatment: None; Patient: HR-48; Time: V1; Status: Responder; Crp: 1.8; Hbi: 0; Bmi: 23.0400201994698; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882189	HR-29-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-29;Time:V1;Status:Responder;CRP:4.9;HBI:0;BMI:21.4995968825585;Status_time:W14; Treatment: None; Patient: HR-29; Time: V1; Status: Responder; Crp: 4.9; Hbi: 0; Bmi: 21.4995968825585; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882190	HR-30-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-30;Time:V1;Status:Non-responder;CRP:15.8;HBI:22;BMI:29.7339004102526;Status_time:W14; Treatment: None; Patient: HR-30; Time: V1; Status: Non-responder; Crp: 15.8; Hbi: 22; Bmi: 29.7339004102526; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882191	HR-31-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-31;Time:V1;Status:Responder;CRP:44;HBI:7;BMI:22.0385674931129;Status_time:W14; Treatment: None; Patient: HR-31; Time: V1; Status: Responder; Crp: 44; Hbi: 7; Bmi: 22.0385674931129; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882192	HR-32-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-32;Time:V1;Status:Non-responder;CRP:16.5;HBI:NA;BMI:NA;Status_time:W14; Treatment: None; Patient: HR-32; Time: V1; Status: Non-responder; Crp: 16.5; Hbi: NA; Bmi: NA; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882193	HR-33-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-33;Time:V1;Status:Responder;CRP:21.17;HBI:4;BMI:18.796189499765;Status_time:W14; Treatment: None; Patient: HR-33; Time: V1; Status: Responder; Crp: 21.17; Hbi: 4; Bmi: 18.796189499765; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882194	HR-35-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-35;Time:V1;Status:Responder;CRP:27;HBI:1;BMI:19.974407790019;Status_time:W14; Treatment: None; Patient: HR-35; Time: V1; Status: Responder; Crp: 27; Hbi: 1; Bmi: 19.974407790019; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882195	HR-36-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-36;Time:V1;Status:Non-responder;CRP:82.7;HBI:1;BMI:19.4674012855831;Status_time:W14; Treatment: None; Patient: HR-36; Time: V1; Status: Non-responder; Crp: 82.7; Hbi: 1; Bmi: 19.4674012855831; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882196	HR-37-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-37;Time:V1;Status:Responder;CRP:4.26;HBI:13;BMI:23.5102040816327;Status_time:W14; Treatment: None; Patient: HR-37; Time: V1; Status: Responder; Crp: 4.26; Hbi: 13; Bmi: 23.5102040816327; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882197	HR-20-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-20;Time:V1;Status:Responder;CRP:15.6;HBI:8;BMI:21.295294753921;Status_time:W14; Treatment: None; Patient: HR-20; Time: V1; Status: Responder; Crp: 15.6; Hbi: 8; Bmi: 21.295294753921; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882198	HR-39-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-39;Time:V1;Status:Responder;CRP:2.62;HBI:0;BMI:26.6727632982777;Status_time:W14; Treatment: None; Patient: HR-39; Time: V1; Status: Responder; Crp: 2.62; Hbi: 0; Bmi: 26.6727632982777; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882199	HR-22-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-22;Time:V1;Status:Responder;CRP:2.16;HBI:4;BMI:20.0183654729109;Status_time:W14; Treatment: None; Patient: HR-22; Time: V1; Status: Responder; Crp: 2.16; Hbi: 4; Bmi: 20.0183654729109; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882200	HR-23-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-23;Time:V1;Status:Non-responder;CRP:5.7;HBI:12;BMI:19.4463667820069;Status_time:W14; Treatment: None; Patient: HR-23; Time: V1; Status: Non-responder; Crp: 5.7; Hbi: 12; Bmi: 19.4463667820069; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882201	HR-24-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-24;Time:V1;Status:Responder;CRP:2.44;HBI:1;BMI:24.5674740484429;Status_time:W14; Treatment: None; Patient: HR-24; Time: V1; Status: Responder; Crp: 2.44; Hbi: 1; Bmi: 24.5674740484429; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882202	HR-26-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-26;Time:V1;Status:Non-responder;CRP:3.1;HBI:1;BMI:13.2330451608876;Status_time:W14; Treatment: None; Patient: HR-26; Time: V1; Status: Non-responder; Crp: 3.1; Hbi: 1; Bmi: 13.2330451608876; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882203	HR-27-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-27;Time:V1;Status:Responder;CRP:19.2;HBI:7;BMI:17.2110868084191;Status_time:W14; Treatment: None; Patient: HR-27; Time: V1; Status: Responder; Crp: 19.2; Hbi: 7; Bmi: 17.2110868084191; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882204	HR-28-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-28;Time:V1;Status:Responder;CRP:1.6;HBI:2;BMI:NA;Status_time:W14; Treatment: None; Patient: HR-28; Time: V1; Status: Responder; Crp: 1.6; Hbi: 2; Bmi: NA; Status_time: W14	Case marker detected.
Crohn's disease	Case	GSM2882205	HR-40-V1	Peripheral blood mononuclear cells Disease state: Crohn's disease;Treatment:None;Patient:HR-40;Time:V1;Status:Responder;CRP:1;HBI:4;BMI:24.3823729785937;Status_time:W14; Treatment: None; Patient: HR-40; Time: V1; Status: Responder; Crp: 1; Hbi: 4; Bmi: 24.3823729785937; Status_time: W14	Case marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort