Matching samples

GSE110186 · NOD2- and disease-specific gene expression profiles of peripheral blood mononuclear cells from Crohn’s disease patients

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (24)

GSM2981862

Excluded

Control_1_+D+LP, biological replicate 1

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Does not meet requirement
        • The reported value differs from the selected requirement.
        • Control_1_+D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Does not meet requirement
          • The reported value differs from the selected requirement.
          • Control_1_+D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
        Source metadata
        Source name
        PBMCs by density-gradient centrifugation
        Characteristics
        tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM2981862
sample_title: Control_1_+D+LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

        GSM2981863

        Excluded

        Control_2_+D+LP, biological replicate 2

        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Does not meet requirement
              • The reported value differs from the selected requirement.
              • Control_2_+D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Does not meet requirement
                • The reported value differs from the selected requirement.
                • Control_2_+D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
              Source metadata
              Source name
              PBMCs by density-gradient centrifugation
              Characteristics
              tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM2981863
sample_title: Control_2_+D+LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

              GSM2981864

              Excluded

              Control_3_+D+LP, biological replicate 3

              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • Control_3_+D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Does not meet requirement
                      • The reported value differs from the selected requirement.
                      • Control_3_+D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                    Source metadata
                    Source name
                    PBMCs by density-gradient centrifugation
                    Characteristics
                    tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM2981864
sample_title: Control_3_+D+LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

                    GSM2981865

                    Excluded

                    Control_1_+D-LP, biological replicate 1

                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Does not meet requirement
                          • The reported value differs from the selected requirement.
                          • Control_1_+D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • Control_1_+D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                          Source metadata
                          Source name
                          PBMCs by density-gradient centrifugation
                          Characteristics
                          tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM2981865
sample_title: Control_1_+D-LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D

                          GSM2981866

                          Excluded

                          Control_2_+D-LP, biological replicate 2

                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • Control_2_+D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Does not meet requirement
                                  • The reported value differs from the selected requirement.
                                  • Control_2_+D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                                Source metadata
                                Source name
                                PBMCs by density-gradient centrifugation
                                Characteristics
                                tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM2981866
sample_title: Control_2_+D-LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D

                                GSM2981867

                                Excluded

                                Control_3_+D-LP, biological replicate 3

                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                      • The reported value differs from the selected requirement.
                                      • Control_3_+D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • Control_3_+D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                                      Source metadata
                                      Source name
                                      PBMCs by density-gradient centrifugation
                                      Characteristics
                                      tissue: PBMC; disease state: healthy donor; treatment: Vitamin D
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM2981867
sample_title: Control_3_+D-LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: Vitamin D

                                      GSM2981868

                                      Excluded

                                      Control_1_-D+LP, biological replicate 1

                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • Control_1_-D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Does not meet requirement
                                              • The reported value differs from the selected requirement.
                                              • Control_1_-D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                            Source metadata
                                            Source name
                                            PBMCs by density-gradient centrifugation
                                            Characteristics
                                            tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM2981868
sample_title: Control_1_-D+LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan

                                            GSM2981869

                                            Excluded

                                            Control_2_-D+LP, biological replicate 2

                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                  • The reported value differs from the selected requirement.
                                                  • Control_2_-D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • Control_2_-D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                  Source metadata
                                                  Source name
                                                  PBMCs by density-gradient centrifugation
                                                  Characteristics
                                                  tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM2981869
sample_title: Control_2_-D+LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan

                                                  GSM2981870

                                                  Excluded

                                                  Control_3_-D+LP, biological replicate 3

                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • Control_3_-D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                          • The reported value differs from the selected requirement.
                                                          • Control_3_-D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                        Source metadata
                                                        Source name
                                                        PBMCs by density-gradient centrifugation
                                                        Characteristics
                                                        tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM2981870
sample_title: Control_3_-D+LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: lipopolysaccharide and peptidoglycan

                                                        GSM2981871

                                                        Excluded

                                                        Control_1_-D-LP, biological replicate 1

                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                              • The reported value differs from the selected requirement.
                                                              • Control_1_-D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • Control_1_-D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                              Source metadata
                                                              Source name
                                                              PBMCs by density-gradient centrifugation
                                                              Characteristics
                                                              tissue: PBMC; disease state: healthy donor; treatment: none
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM2981871
sample_title: Control_1_-D-LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: none

                                                              GSM2981872

                                                              Excluded

                                                              Control_2_-D-LP, biological replicate 2

                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • Control_2_-D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                      • The reported value differs from the selected requirement.
                                                                      • Control_2_-D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                                    Source metadata
                                                                    Source name
                                                                    PBMCs by density-gradient centrifugation
                                                                    Characteristics
                                                                    tissue: PBMC; disease state: healthy donor; treatment: none
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM2981872
sample_title: Control_2_-D-LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: none

                                                                    GSM2981873

                                                                    Excluded

                                                                    Control_3_-D-LP, biological replicate 3

                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                          • The reported value differs from the selected requirement.
                                                                          • Control_3_-D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • Control_3_-D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: healthy donor; treatment: none
                                                                          Source metadata
                                                                          Source name
                                                                          PBMCs by density-gradient centrifugation
                                                                          Characteristics
                                                                          tissue: PBMC; disease state: healthy donor; treatment: none
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM2981873
sample_title: Control_3_-D-LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: healthy donor; treatment: none

                                                                          GSM2981874

                                                                          Excluded

                                                                          Patient_1_+D+LP, biological replicate 1

                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • Patient_1_+D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                  • The reported value differs from the selected requirement.
                                                                                  • Patient_1_+D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                Source metadata
                                                                                Source name
                                                                                PBMCs by density-gradient centrifugation
                                                                                Characteristics
                                                                                tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM2981874
sample_title: Patient_1_+D+LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

                                                                                GSM2981875

                                                                                Excluded

                                                                                Patient_2_+D+LP, biological replicate 2

                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                      • The reported value differs from the selected requirement.
                                                                                      • Patient_2_+D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • Patient_2_+D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                      Source metadata
                                                                                      Source name
                                                                                      PBMCs by density-gradient centrifugation
                                                                                      Characteristics
                                                                                      tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM2981875
sample_title: Patient_2_+D+LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

                                                                                      GSM2981876

                                                                                      Excluded

                                                                                      Patient_3_+D+LP, biological replicate 3

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • Patient_3_+D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                              • The reported value differs from the selected requirement.
                                                                                              • Patient_3_+D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                            Source metadata
                                                                                            Source name
                                                                                            PBMCs by density-gradient centrifugation
                                                                                            Characteristics
                                                                                            tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM2981876
sample_title: Patient_3_+D+LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D/lipopolysaccharide/peptidoglycan

                                                                                            GSM2981877

                                                                                            Excluded

                                                                                            Patient_1_+D-LP, biological replicate 1

                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                  • The reported value differs from the selected requirement.
                                                                                                  • Patient_1_+D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • Patient_1_+D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  PBMCs by density-gradient centrifugation
                                                                                                  Characteristics
                                                                                                  tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM2981877
sample_title: Patient_1_+D-LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D

                                                                                                  GSM2981878

                                                                                                  Excluded

                                                                                                  Patient_2_+D-LP, biological replicate 2

                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • Patient_2_+D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                          • The reported value differs from the selected requirement.
                                                                                                          • Patient_2_+D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        PBMCs by density-gradient centrifugation
                                                                                                        Characteristics
                                                                                                        tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM2981878
sample_title: Patient_2_+D-LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D

                                                                                                        GSM2981879

                                                                                                        Excluded

                                                                                                        Patient_3_+D-LP, biological replicate 3

                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                              • The reported value differs from the selected requirement.
                                                                                                              • Patient_3_+D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • Patient_3_+D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              PBMCs by density-gradient centrifugation
                                                                                                              Characteristics
                                                                                                              tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM2981879
sample_title: Patient_3_+D-LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: Vitamin D

                                                                                                              GSM2981880

                                                                                                              Excluded

                                                                                                              Patient_1_-D+LP, biological replicate 1

                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • Patient_1_-D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                      • Patient_1_-D+LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    PBMCs by density-gradient centrifugation
                                                                                                                    Characteristics
                                                                                                                    tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM2981880
sample_title: Patient_1_-D+LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan

                                                                                                                    GSM2981881

                                                                                                                    Excluded

                                                                                                                    Patient_2_-D+LP, biological replicate 2

                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                          • Patient_2_-D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • Patient_2_-D+LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          PBMCs by density-gradient centrifugation
                                                                                                                          Characteristics
                                                                                                                          tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM2981881
sample_title: Patient_2_-D+LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan

                                                                                                                          GSM2981882

                                                                                                                          Excluded

                                                                                                                          Patient_3_-D+LP, biological replicate 3

                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • Patient_3_-D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                  • Patient_3_-D+LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                PBMCs by density-gradient centrifugation
                                                                                                                                Characteristics
                                                                                                                                tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM2981882
sample_title: Patient_3_-D+LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: lipopolysaccharide and peptidoglycan

                                                                                                                                GSM2981883

                                                                                                                                Excluded

                                                                                                                                Patient_1_-D-LP, biological replicate 1

                                                                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                      • Patient_1_-D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • Patient_1_-D-LP, biological replicate 1 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      PBMCs by density-gradient centrifugation
                                                                                                                                      Characteristics
                                                                                                                                      tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM2981883
sample_title: Patient_1_-D-LP, biological replicate 1
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: none

                                                                                                                                      GSM2981884

                                                                                                                                      Excluded

                                                                                                                                      Patient_2_-D-LP, biological replicate 2

                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • Patient_2_-D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                              • Patient_2_-D-LP, biological replicate 2 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            PBMCs by density-gradient centrifugation
                                                                                                                                            Characteristics
                                                                                                                                            tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM2981884
sample_title: Patient_2_-D-LP, biological replicate 2
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: none

                                                                                                                                            GSM2981885

                                                                                                                                            Excluded

                                                                                                                                            Patient_3_-D-LP, biological replicate 3

                                                                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                  • Patient_3_-D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • Patient_3_-D-LP, biological replicate 3 PBMCs by density-gradient centrifugation tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  PBMCs by density-gradient centrifugation
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: PBMC; disease state: Crohn’s disease; treatment: none
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM2981885
sample_title: Patient_3_-D-LP, biological replicate 3
source_name: PBMCs by density-gradient centrifugation
characteristics: tissue: PBMC; disease state: Crohn’s disease; treatment: none