GSE112057

Whole Blood Transcriptome Profiling in Juvenile Idiopathic Arthritis and Inflammatory Bowel Disease

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
bulk RNA-seq
Organism
Homo sapiens
Whole-study samples
202 samples
Specimen
Biofluid
Reported/interpreted study design
Disease/model vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Mo A, Marigorta UM, Kugathasan S, Prahalad S, Gibson G
Contact name
Angela Mo
Submission date
2018-03-20
Last update
2019-03-27
Organization
Georgia Institute of Technology
Department
School of Biological Sciences
Public date
2018-05-29
Experiment types
Expression profiling by high throughput sequencing
Platforms
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Series type
Series
SubSeries
Not available
BioProject
PRJNA439192

Summary

We report whole blood gene expression of 12 healthy controls and 190 patients with either oligoarticular (n=43), polyarticular (n=46), or systemic JIA (n=26), or Crohn's disease (n=60) and ulcerative colitis (n=15). The subtypes of JIA are characterized by a gradient of differential gene expression ranging from controls to oligoJIA, polyJIA, sJIA, and IBD.

Overall design

Whole blood samples were obtained from JIA patients age <17 years. Transcriptome profiling was performed with RNA-Seq.

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
202 GSM samples
 Primary source
recount3

Trusted source evidence for processed count availability.

recount3 project ID
srp136057
 Available
Expression Atlas

Curated expression experiment linkage and source URL.

Expression Atlas accession
E-GEOD-112057
 Available
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

3 linked publications 3 DOIs

Primary publication

  1. Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease. Genome medicine, 2018

Related publications

  1. Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease. Computers in biology and medicine, 2025
  2. Identification of Key Biomarkers and Immune Infiltration in Systemic Juvenile Idiopathic Arthritis by Integrated Bioinformatic Analysis. Frontiers in molecular biosciences, 2021
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis
88% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

10/10 pts

No dataset warnings are present.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • 115 samples are still unassigned.

Next Steps

  • Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 115 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Crohn's disease 75 samples
  • Likely control group Control 12 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
  • Prioritized assay: bulk RNA-seq is the active assay expectation.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: recount3 reports trusted processed count availability.
  • External evidence: Expression Atlas curated experiment link is available.
  • External evidence: PubMed links 3 publications; 3 DOIs available: PMID 29950172, PMID 34336925, PMID 39894009.
  • Publication context: Disease-specific regulation of gene expression in a comparative analysis of juvenile idiopathic arthritis and inflammatory bowel disease.. Genome medicine, 2018. PMID 29950172. DOI 10.1186/s13073-018-0558-x.
  • Publication context: Identification of Key Biomarkers and Immune Infiltration in Systemic Juvenile Idiopathic Arthritis by Integrated Bioinformatic Analysis.. Frontiers in molecular biosciences, 2021. PMID 34336925. DOI 10.3389/fmolb.2021.681526.
  • Publication context: Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease.. Computers in biology and medicine, 2025. PMID 39894009. DOI 10.1016/j.compbiomed.2025.109742.

Cautions

  • Downgraded for tissue search because it is a biofluid cohort.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No dataset warnings

Normalized Fields

showing 500 of 687 fields

Sample Group Preview

showing 112 of 202 preview rows Show Hide
Study totals: Case 75 | Control 12 | Unassigned 115 | Excluded 0 | Ambiguous 0 showing 112 of 202 preview rows
Group Role Accession Title Source / characteristics Reason
Crohn's disease Case GSM3056394 Sample001_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 9; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056395 Sample002_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056396 Sample003_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 16; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056397 Sample004_Ulcerative Colitis Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056398 Sample005_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056399 Sample006_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056400 Sample007_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 17; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056411 Sample018_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056412 Sample019_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056413 Sample020_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056414 Sample021_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056423 Sample030_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 13; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056424 Sample031_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 26; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056425 Sample032_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 17; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056426 Sample033_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056427 Sample034_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056428 Sample035_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 18; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056429 Sample036_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056430 Sample037_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 17; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056431 Sample038_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 14; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056432 Sample039_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 16; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056433 Sample040_Ulcerative Colitis Whole Blood Gender: Male; Age at diagnosis: 17; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056434 Sample041_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056435 Sample042_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 13; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056436 Sample043_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056439 Sample046_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 16; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056440 Sample047_Ulcerative Colitis Whole Blood Gender: Male; Age at diagnosis: 26; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056441 Sample048_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 16; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056442 Sample049_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: 13; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056443 Sample050_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056444 Sample051_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 9; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056445 Sample052_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056458 Sample065_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056459 Sample066_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 12; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056460 Sample067_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056461 Sample068_Ulcerative Colitis Whole Blood Gender: Male; Age at diagnosis: 5; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056462 Sample069_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056463 Sample070_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056464 Sample071_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 14; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056474 Sample081_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: 16; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056475 Sample082_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 14; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056476 Sample083_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056477 Sample084_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056490 Sample097_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056491 Sample098_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 15; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Ulcerative colitis Case GSM3056492 Sample099_Ulcerative Colitis Whole Blood Gender: Female; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Ulcerative Colitis; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056493 Sample100_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056504 Sample111_Crohn's Disease Whole Blood Gender: Female; Age at diagnosis: 14; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056505 Sample112_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: 12; Ancestry: Black; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
Crohn's disease Case GSM3056506 Sample113_Crohn's Disease Whole Blood Gender: Male; Age at diagnosis: NA; Ancestry: White; Disease state (diagnosis): Crohn's Disease; Tissue: Whole Blood Case marker detected.
25 additional case samples are hidden from this preview.
Control Control GSM3056569 Sample176_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056570 Sample177_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056571 Sample178_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056572 Sample179_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056573 Sample180_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056574 Sample181_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056575 Sample182_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056576 Sample183_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056577 Sample184_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056578 Sample185_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056579 Sample186_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Control Control GSM3056580 Sample187_Control Whole Blood Gender: NA; Age at diagnosis: NA; Ancestry: NA; Disease state (diagnosis): Control; Tissue: Whole Blood Sample-local control marker detected.
Unassigned Unassigned GSM3056401 Sample008_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056402 Sample009_Polyarticular JIA Whole Blood Gender: Male; Age at diagnosis: 9; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056403 Sample010_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 14; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056404 Sample011_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 8; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056405 Sample012_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 2; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056406 Sample013_Systemic JIA Whole Blood Gender: Female; Age at diagnosis: 1; Ancestry: Black; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056407 Sample014_Systemic JIA Whole Blood Gender: Female; Age at diagnosis: 1.5; Ancestry: Black; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056408 Sample015_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 7; Ancestry: Black; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056409 Sample016_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 5; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056410 Sample017_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 14; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056415 Sample022_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056416 Sample023_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056417 Sample024_Systemic JIA Whole Blood Gender: Male; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056418 Sample025_Systemic JIA Whole Blood Gender: Female; Age at diagnosis: 1.5; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056419 Sample026_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 5; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056420 Sample027_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 2; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056421 Sample028_Systemic JIA Whole Blood Gender: Male; Age at diagnosis: 1; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056422 Sample029_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 5; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056437 Sample044_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056438 Sample045_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: Black; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056446 Sample053_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 11; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056447 Sample054_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 11; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056448 Sample055_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 13; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056449 Sample056_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056450 Sample057_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 2; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056451 Sample058_Systemic JIA Whole Blood Gender: Male; Age at diagnosis: 1; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056452 Sample059_Oligoarticular JIA Whole Blood Gender: Male; Age at diagnosis: 15; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056453 Sample060_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 11; Ancestry: Black; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056454 Sample061_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 13; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056455 Sample062_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 7; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056456 Sample063_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 16; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056457 Sample064_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 11; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056465 Sample072_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056466 Sample073_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 12; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056467 Sample074_Systemic JIA Whole Blood Gender: Male; Age at diagnosis: 6; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056468 Sample075_Oligoarticular JIA Whole Blood Gender: Male; Age at diagnosis: 9; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056469 Sample076_Systemic JIA Whole Blood Gender: Male; Age at diagnosis: 1; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056470 Sample077_Systemic JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Systemic JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056471 Sample078_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 8; Ancestry: Black; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056472 Sample079_Oligoarticular JIA Whole Blood Gender: Male; Age at diagnosis: 4; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056473 Sample080_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 17; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056478 Sample085_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 13; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056479 Sample086_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 7; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056480 Sample087_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 9; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056481 Sample088_Polyarticular JIA Whole Blood Gender: Male; Age at diagnosis: 7; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056482 Sample089_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 4; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056483 Sample090_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 10; Ancestry: White; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056484 Sample091_Polyarticular JIA Whole Blood Gender: Female; Age at diagnosis: 11; Ancestry: Black; Disease state (diagnosis): Polyarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056485 Sample092_Oligoarticular JIA Whole Blood Gender: Female; Age at diagnosis: 5; Ancestry: White; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
Unassigned Unassigned GSM3056486 Sample093_Oligoarticular JIA Whole Blood Gender: Male; Age at diagnosis: 8; Ancestry: Black; Disease state (diagnosis): Oligoarticular JIA; Tissue: Whole Blood No explicit case or control marker detected.
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External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.