GSE11223 matching samples

GSM282855

Uncertain

5192 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282855
sample_title: 5192 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282856

Uncertain

5193 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 102; current medication: Movicol 1 sachet daily; birth date: 9/5/62; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: RIF pain, persistent anaemia.; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282856
sample_title: 5193 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 102; current medication: Movicol 1 sachet daily; birth date: 9/5/62; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: RIF pain, persistent anaemia.; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282857

Uncertain

5194 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282857
sample_title: 5194 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282858

Uncertain

5195 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282858
sample_title: 5195 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282859

Uncertain

5196 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282859
sample_title: 5196 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282860

Uncertain

5197 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 106; current medication: None; birth date: 5/29/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; indictation for procedure: Abdominal pain, upper GI symptoms.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282860
sample_title: 5197 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 106; current medication: None; birth date: 5/29/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; indictation for procedure: Abdominal pain, upper GI symptoms.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282861

Uncertain

5198 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 108; current medication: Asacol 400mg BD; birth date: 8/30/33; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: Altered bowel habbit, ? UC 1974, never on Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282861
sample_title: 5198 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 108; current medication: Asacol 400mg BD; birth date: 8/30/33; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: Altered bowel habbit, ? UC 1974, never on Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282862

Uncertain

5199 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282862
sample_title: 5199 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282863

Uncertain

5200 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282863
sample_title: 5200 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282864

Uncertain

5201 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282864
sample_title: 5201 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282865

Uncertain

5202 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282865
sample_title: 5202 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282866

Uncertain

5203 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282866
sample_title: 5203 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282867

Uncertain

5204 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282867
sample_title: 5204 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282868

Uncertain

5205 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 113; current medication: OCP; birth date: 8/17/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Recurrant abcess, ?IBD; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282868
sample_title: 5205 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 113; current medication: OCP; birth date: 8/17/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Recurrant abcess, ?IBD; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282869

Uncertain

5206 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282869
sample_title: 5206 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282870

Uncertain

5207 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282870
sample_title: 5207 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282871

Uncertain

5208 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 116; current medication: Clomiprimine; birth date: 1/19/56; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: FH Colon cancer; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282871
sample_title: 5208 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 116; current medication: Clomiprimine; birth date: 1/19/56; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: FH Colon cancer; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282872

Uncertain

5209 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282872
sample_title: 5209 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282873

Uncertain

5210 Normal Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed terminal ileum
Characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282873
sample_title: 5210 Normal Uninflamed terminal ileum
source_name: Normal Uninflamed terminal ileum
characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282874

Uncertain

5211 Normal Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed terminal ileum
Characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282874
sample_title: 5211 Normal Uninflamed terminal ileum
source_name: Normal Uninflamed terminal ileum
characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282875

Uncertain

10609 Normal Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed terminal ileum
Characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282875
sample_title: 10609 Normal Uninflamed terminal ileum
source_name: Normal Uninflamed terminal ileum
characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282876

Uncertain

11081 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282876
sample_title: 11081 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 101; current medication: Paracetamol; birth date: 10/5/63; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: Weight loss, altered bowel habbit.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282877

Uncertain

11082 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282877
sample_title: 11082 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282878

Uncertain

11083 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282878
sample_title: 11083 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282879

Uncertain

11084 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282879
sample_title: 11084 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282880

Uncertain

11085 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 106; current medication: None; birth date: 5/29/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; indictation for procedure: Abdominal pain, upper GI symptoms.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282880
sample_title: 11085 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 106; current medication: None; birth date: 5/29/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; indictation for procedure: Abdominal pain, upper GI symptoms.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282881

Uncertain

11086 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282881
sample_title: 11086 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282882

Uncertain

11087 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 102; current medication: Movicol 1 sachet daily; birth date: 9/5/62; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: RIF pain, persistent anaemia.; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282882
sample_title: 11087 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 102; current medication: Movicol 1 sachet daily; birth date: 9/5/62; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/2/04; indictation for procedure: RIF pain, persistent anaemia.; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282883

Uncertain

11088 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282883
sample_title: 11088 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282884

Uncertain

11089 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282884
sample_title: 11089 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282885

Uncertain

11090 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282885
sample_title: 11090 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282886

Uncertain

11091 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282886
sample_title: 11091 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282887

Uncertain

11092 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282887
sample_title: 11092 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282888

Uncertain

11093 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282888
sample_title: 11093 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282889

Uncertain

11094 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 116; current medication: Clomiprimine; birth date: 1/19/56; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: FH Colon cancer; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282889
sample_title: 11094 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 116; current medication: Clomiprimine; birth date: 1/19/56; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: FH Colon cancer; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282890

Uncertain

11095 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282890
sample_title: 11095 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282891

Uncertain

11376 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282891
sample_title: 11376 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 103; current medication: None; birth date: 6/30/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/9/04; indictation for procedure: Diarrhoea, now settled, Mum has UC; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282892

Uncertain

11377 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282892
sample_title: 11377 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 104; current medication: None; birth date: 1/2/72; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282893

Uncertain

11378 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282893
sample_title: 11378 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 105; current medication: None; birth date: 7/29/84; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/15/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282894

Uncertain

11379 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282894
sample_title: 11379 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 107; current medication: None; birth date: 07/28/1060; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/25/04; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282895

Uncertain

11380 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282895
sample_title: 11380 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 109; current medication: None; birth date: 10/10/57; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: FH of Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282896

Uncertain

11381 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282896
sample_title: 11381 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 110; current medication: None; birth date: 3/13/54; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/2/04; indictation for procedure: Diarrhoea; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282897

Uncertain

11382 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282897
sample_title: 11382 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 111; current medication: Paracetamol; birth date: 9/5/82; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; indictation for procedure: FH of CD, Path Increased lymphiod in TI Bx.; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282898

Uncertain

11383 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282898
sample_title: 11383 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 112; current medication: None; birth date: 7/5/81; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282899

Uncertain

11384 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282899
sample_title: 11384 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 114; current medication: None; birth date: 6/27/36; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; indictation for procedure: Altered bowel habit, Alcohol excess; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282900

Uncertain

11385 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282900
sample_title: 11385 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 115; current medication: Frusemide, Codine Phosphate; birth date: 9/14/28; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: Diarrhoea, Also has Prostate Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282901

Uncertain

11386 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282901
sample_title: 11386 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 117; current medication: Loperamide; birth date: 3/31/67; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/21/04; indictation for procedure: IBS type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282902

Uncertain

11387 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 119; current medication: Salubtamol, Bricanyl; birth date: 9/30/70; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/27/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282902
sample_title: 11387 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 119; current medication: Salubtamol, Bricanyl; birth date: 9/30/70; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/27/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282903

Uncertain

11388 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 120; current medication: Minicycline; birth date: 5/6/54; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282903
sample_title: 11388 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 120; current medication: Minicycline; birth date: 5/6/54; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282904

Uncertain

11389 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 120; current medication: Minicycline; birth date: 5/6/54; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282904
sample_title: 11389 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 120; current medication: Minicycline; birth date: 5/6/54; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; indictation for procedure: Altered bowel habit; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282908

Uncertain

11393 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282908
sample_title: 11393 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282909

Uncertain

11394 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282909
sample_title: 11394 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282910

Uncertain

11395 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282910
sample_title: 11395 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 122; current medication: Venlafaxine; birth date: 7/10/61; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; indictation for procedure: FH Colon Ca; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282911

Uncertain

11396 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282911
sample_title: 11396 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282912

Uncertain

11397 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282912
sample_title: 11397 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282913

Uncertain

11398 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282913
sample_title: 11398 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 124; current medication: OCP; birth date: 6/25/77; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282914

Uncertain

11399 Normal Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed terminal ileum
Characteristics: patient: 125; current medication: OCP; birth date: 3/17/78; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: Diarrhoea predominant IBS; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282914
sample_title: 11399 Normal Uninflamed terminal ileum
source_name: Normal Uninflamed terminal ileum
characteristics: patient: 125; current medication: OCP; birth date: 3/17/78; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: Diarrhoea predominant IBS; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282915

Uncertain

11400 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 125; current medication: OCP; birth date: 3/17/78; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: Diarrhoea predominant IBS; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282915
sample_title: 11400 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 125; current medication: OCP; birth date: 3/17/78; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: Diarrhoea predominant IBS; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282916

Uncertain

11401 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 126; current medication: None; birth date: 4/4/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: FH of Crohn's disease, Symtom free at procedure; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282916
sample_title: 11401 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 126; current medication: None; birth date: 4/4/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: FH of Crohn's disease, Symtom free at procedure; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282917

Uncertain

11402 Normal Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Inflamed sigmoid colon
Characteristics: patient: 127; current medication: Prednisolone 10mg Heparin Questran Gabapentin FA; birth date: 9/9/36; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; indictation for procedure: Pseudomembranous Colitis; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282917
sample_title: 11402 Normal Inflamed sigmoid colon
source_name: Normal Inflamed sigmoid colon
characteristics: patient: 127; current medication: Prednisolone 10mg Heparin Questran Gabapentin FA; birth date: 9/9/36; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; indictation for procedure: Pseudomembranous Colitis; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282918

Uncertain

11403 Normal Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed terminal ileum
Characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282918
sample_title: 11403 Normal Uninflamed terminal ileum
source_name: Normal Uninflamed terminal ileum
characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282919

Uncertain

11404 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282919
sample_title: 11404 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282920

Uncertain

11405 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 126; current medication: None; birth date: 4/4/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: FH of Crohn's disease, Symtom free at procedure; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282920
sample_title: 11405 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 126; current medication: None; birth date: 4/4/87; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/1/05; indictation for procedure: FH of Crohn's disease, Symtom free at procedure; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282921

Uncertain

11406 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282921
sample_title: 11406 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 128; current medication: Pentaza; birth date: 3/19/81; ethnicity: JEWISH; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/1/05; indictation for procedure: IBS Type symptoms; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282922

Uncertain

12457 Normal Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Inflamed sigmoid colon
Characteristics: patient: 134; current medication: None; birth date: 12/21/50; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/12/05; indictation for procedure: Abdominal pain; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282922
sample_title: 12457 Normal Inflamed sigmoid colon
source_name: Normal Inflamed sigmoid colon
characteristics: patient: 134; current medication: None; birth date: 12/21/50; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/12/05; indictation for procedure: Abdominal pain; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282923

Uncertain

12458 Normal Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed ascending colon
Characteristics: patient: 135; current medication: none; birth date: 8/14/59; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/28/05; indictation for procedure: bloody diahorrea; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282923
sample_title: 12458 Normal Uninflamed ascending colon
source_name: Normal Uninflamed ascending colon
characteristics: patient: 135; current medication: none; birth date: 8/14/59; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/28/05; indictation for procedure: bloody diahorrea; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282924

Uncertain

12459 Normal Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed descending colon
Characteristics: patient: 135; current medication: none; birth date: 8/14/59; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/28/05; indictation for procedure: bloody diahorrea; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282924
sample_title: 12459 Normal Uninflamed descending colon
source_name: Normal Uninflamed descending colon
characteristics: patient: 135; current medication: none; birth date: 8/14/59; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/28/05; indictation for procedure: bloody diahorrea; ucss: 0; blood obtained: TRUE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282925

Uncertain

12460 Normal Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Inflamed descending colon
Characteristics: patient: 136; current medication: metranidazole 400mg TDS Prednisolone; birth date: 5/21/51; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/20/05; indictation for procedure: Diarrhoea PR bleeding; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282925
sample_title: 12460 Normal Inflamed descending colon
source_name: Normal Inflamed descending colon
characteristics: patient: 136; current medication: metranidazole 400mg TDS Prednisolone; birth date: 5/21/51; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/20/05; indictation for procedure: Diarrhoea PR bleeding; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282926

Uncertain

12461 Normal Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Inflamed sigmoid colon
Characteristics: patient: 136; current medication: metranidazole 400mg TDS Prednisolone; birth date: 5/21/51; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/20/05; indictation for procedure: Diarrhoea PR bleeding; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282926
sample_title: 12461 Normal Inflamed sigmoid colon
source_name: Normal Inflamed sigmoid colon
characteristics: patient: 136; current medication: metranidazole 400mg TDS Prednisolone; birth date: 5/21/51; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/20/05; indictation for procedure: Diarrhoea PR bleeding; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282927

Uncertain

12462 Normal Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Normal Uninflamed sigmoid colon
Characteristics: patient: 133; current medication: Omeprazole 20mg; birth date: 4/23/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/13/05; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282927
sample_title: 12462 Normal Uninflamed sigmoid colon
source_name: Normal Uninflamed sigmoid colon
characteristics: patient: 133; current medication: Omeprazole 20mg; birth date: 4/23/65; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/13/05; indictation for procedure: FH Colon Cancer; ucss: 0; blood obtained: FALSE; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; category: 0; disease: Normal; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282928

Uncertain

5212 UC Inflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed terminal ileum
Characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: terminal ileum; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282928
sample_title: 5212 UC Inflamed terminal ileum
source_name: UC Inflamed terminal ileum
characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: terminal ileum; inflammation_status: Inflamed

GSM282929

Uncertain

5213 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 229; current medication: Naproxen; birth date: 11/27/61; ethnicity: CAUCASIAN; symptoms onset date: 1/14/05; diagnosis date: 1/18/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/26/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: NEW; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282929
sample_title: 5213 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 229; current medication: Naproxen; birth date: 11/27/61; ethnicity: CAUCASIAN; symptoms onset date: 1/14/05; diagnosis date: 1/18/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/18/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/26/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: NEW; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282930

Uncertain

5214 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282930
sample_title: 5214 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282931

Uncertain

5215 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282931
sample_title: 5215 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 205; current medication: Pentaza 3g/d; birth date: 6/8/79; ethnicity: CAUCASIAN; symptoms onset date: 10/1/03; diagnosis date: 8/30/04; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 4; calprotectin: 0; esr: 15; crp: 19; hb: 110; wcc: 5; neutrophils: 3; albumin: 43; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: NEW; smoking status: ex; smoking start date: 1/1/85; smoking stop date: 3/1/03; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282932

Uncertain

5216 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 238; current medication: Enalapril Zantac; birth date: 9/27/38; ethnicity: CAUCASIAN; symptoms onset date: 9/25/03; diagnosis date: 1/14/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: NEW; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: Hypertension Diverticular disease; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282932
sample_title: 5216 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 238; current medication: Enalapril Zantac; birth date: 9/27/38; ethnicity: CAUCASIAN; symptoms onset date: 9/25/03; diagnosis date: 1/14/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: NEW; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: Hypertension Diverticular disease; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282933

Uncertain

5217 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 238; current medication: Enalapril Zantac; birth date: 9/27/38; ethnicity: CAUCASIAN; symptoms onset date: 9/25/03; diagnosis date: 1/14/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: NEW; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: Hypertension Diverticular disease; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282933
sample_title: 5217 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 238; current medication: Enalapril Zantac; birth date: 9/27/38; ethnicity: CAUCASIAN; symptoms onset date: 9/25/03; diagnosis date: 1/14/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: NEW; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: Hypertension Diverticular disease; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282934

Uncertain

5218 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 243; current medication: Atenolol Pravastatin Asprin Adalat BFZ Balsalizide; birth date: 2/17/25; ethnicity: CAUCASIAN; symptoms onset date: 8/1/04; diagnosis date: 3/29/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: IHD Deaf; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282934
sample_title: 5218 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 243; current medication: Atenolol Pravastatin Asprin Adalat BFZ Balsalizide; birth date: 2/17/25; ethnicity: CAUCASIAN; symptoms onset date: 8/1/04; diagnosis date: 3/29/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: IHD Deaf; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282935

Uncertain

5221 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 245; current medication: Pentaza 1g BD; birth date: 11/4/67; ethnicity: CAUCASIAN; symptoms onset date: 11/4/04; diagnosis date: 3/16/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/16/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/16/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 6/3/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: Asthma; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282935
sample_title: 5221 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 245; current medication: Pentaza 1g BD; birth date: 11/4/67; ethnicity: CAUCASIAN; symptoms onset date: 11/4/04; diagnosis date: 3/16/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/16/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/16/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 6/3/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: Asthma; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282936

Uncertain

5222 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 251; current medication: Bumetanide Asprin Lisinopril Colifoam; birth date: 5/22/21; ethnicity: CAUCASIAN; symptoms onset date: 1/1/05; diagnosis date: 6/6/05; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/6/05; ucss: 9; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: Vaginal Prolapse-Angina; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282936
sample_title: 5222 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 251; current medication: Bumetanide Asprin Lisinopril Colifoam; birth date: 5/22/21; ethnicity: CAUCASIAN; symptoms onset date: 1/1/05; diagnosis date: 6/6/05; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/6/05; ucss: 9; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: Vaginal Prolapse-Angina; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282937

Uncertain

5223 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 256; current medication: None; birth date: 10/16/44; ethnicity: CAUCASIAN; symptoms onset date: 4/1/05; diagnosis date: 6/2/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 10; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282937
sample_title: 5223 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 256; current medication: None; birth date: 10/16/44; ethnicity: CAUCASIAN; symptoms onset date: 4/1/05; diagnosis date: 6/2/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 10; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: NEW; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282938

Uncertain

5224 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 270; current medication: Becotide inhaler; birth date: 4/30/52; ethnicity: CAUCASIAN; symptoms onset date: 1/1/99; diagnosis date: 8/24/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/24/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 8/24/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: NEW; smoking status: current; smoking amount: 5-14; other illnesses: Asthma; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282938
sample_title: 5224 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 270; current medication: Becotide inhaler; birth date: 4/30/52; ethnicity: CAUCASIAN; symptoms onset date: 1/1/99; diagnosis date: 8/24/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/24/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 8/24/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: NEW; smoking status: current; smoking amount: 5-14; other illnesses: Asthma; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282939

Uncertain

5237 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282939
sample_title: 5237 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282940

Uncertain

5238 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282940
sample_title: 5238 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282941

Uncertain

5239 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 202; current medication: Sulphasalazine 3g/d, Folic Acid 5mg/d, HRT, DF118; birth date: 10/3/50; ethnicity: CAUCASIAN; symptoms onset date: 1/1/68; diagnosis date: 1/1/69; joint problems: TRUE; uc flare up: TRUE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Polymyalgia rheumatica; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282941
sample_title: 5239 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 202; current medication: Sulphasalazine 3g/d, Folic Acid 5mg/d, HRT, DF118; birth date: 10/3/50; ethnicity: CAUCASIAN; symptoms onset date: 1/1/68; diagnosis date: 1/1/69; joint problems: TRUE; uc flare up: TRUE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Polymyalgia rheumatica; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282942

Uncertain

5240 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 203; current medication: Asacol 800mg BD, Simvastatin; birth date: 1/10/35; ethnicity: CAUCASIAN; symptoms onset date: 11/1/92; diagnosis date: 3/23/93; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/1/04; ucss: 1; calprotectin: 0; esr: 14; crp: 0; hb: 147; wcc: 6; neutrophils: 4; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: HISTOLOGICAL; diagnosis recto sigmoid: HISTOLOGICAL; diagnosis splen flex: HISTOLOGICAL; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/57; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282942
sample_title: 5240 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 203; current medication: Asacol 800mg BD, Simvastatin; birth date: 1/10/35; ethnicity: CAUCASIAN; symptoms onset date: 11/1/92; diagnosis date: 3/23/93; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/1/04; ucss: 1; calprotectin: 0; esr: 14; crp: 0; hb: 147; wcc: 6; neutrophils: 4; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: HISTOLOGICAL; diagnosis recto sigmoid: HISTOLOGICAL; diagnosis splen flex: HISTOLOGICAL; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/57; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282943

Uncertain

5241 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282943
sample_title: 5241 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282944

Uncertain

5242 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 207; current medication: Asacol 800mg BD, Colifoam Enemas Daily; birth date: 4/29/47; ethnicity: CAUCASIAN; symptoms onset date: 3/1/88; diagnosis date: 8/18/88; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/14/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 10/14/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: BOTH; followup hep flex: BOTH; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/10/62; smoking stop date: 3/15/75; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282944
sample_title: 5242 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 207; current medication: Asacol 800mg BD, Colifoam Enemas Daily; birth date: 4/29/47; ethnicity: CAUCASIAN; symptoms onset date: 3/1/88; diagnosis date: 8/18/88; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/14/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 10/14/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: BOTH; followup hep flex: BOTH; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/10/62; smoking stop date: 3/15/75; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282945

Uncertain

5243 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 208; current medication: Prednisolone 25mg/d, Pentaza 1g BD, Fosomax weekly; birth date: 8/16/85; ethnicity: CAUCASIAN; symptoms onset date: 6/1/04; diagnosis date: 6/25/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/14/04; ucss: 2; calprotectin: 0; esr: 17; crp: 3; hb: 121; wcc: 8; neutrophils: 5; albumin: 39; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282945
sample_title: 5243 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 208; current medication: Prednisolone 25mg/d, Pentaza 1g BD, Fosomax weekly; birth date: 8/16/85; ethnicity: CAUCASIAN; symptoms onset date: 6/1/04; diagnosis date: 6/25/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/14/04; ucss: 2; calprotectin: 0; esr: 17; crp: 3; hb: 121; wcc: 8; neutrophils: 5; albumin: 39; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282946

Uncertain

5244 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282946
sample_title: 5244 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282947

Uncertain

5245 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 211; current medication: Predfoam Adcal D3 Alendronate; birth date: 11/10/44; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 6/7/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/5/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/5/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Coeliac disease 1991; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282947
sample_title: 5245 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 211; current medication: Predfoam Adcal D3 Alendronate; birth date: 11/10/44; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 6/7/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/5/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/5/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Coeliac disease 1991; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282948

Uncertain

5246 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 213; current medication: PRED 7MG, ATENOLOL 100MG, ASPRIN 75MG, SIMVASTATI; birth date: 11/1/43; ethnicity: CAUCASIAN; symptoms onset date: 3/1/82; diagnosis date: 2/2/83; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/12/04; followup rectum: COLONOSCOPIC; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/74; smoking amount: unknown; other illnesses: ISCHEAMIC HEART DISEASE; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282948
sample_title: 5246 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 213; current medication: PRED 7MG, ATENOLOL 100MG, ASPRIN 75MG, SIMVASTATI; birth date: 11/1/43; ethnicity: CAUCASIAN; symptoms onset date: 3/1/82; diagnosis date: 2/2/83; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/12/04; followup rectum: COLONOSCOPIC; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/74; smoking amount: unknown; other illnesses: ISCHEAMIC HEART DISEASE; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282949

Uncertain

5247 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282949
sample_title: 5247 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282950

Uncertain

5248 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282950
sample_title: 5248 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282951

Uncertain

5249 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282951
sample_title: 5249 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282952

Uncertain

5250 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 219; current medication: Sulphasalazine 1.2g Colifoam; birth date: 1/5/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/81; diagnosis date: 1/1/81; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/7/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282952
sample_title: 5250 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 219; current medication: Sulphasalazine 1.2g Colifoam; birth date: 1/5/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/81; diagnosis date: 1/1/81; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/7/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282953

Uncertain

5251 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282953
sample_title: 5251 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282954

Uncertain

5252 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 223; current medication: Prednisolone 20mg Asacol 2.4g; birth date: 1/18/44; ethnicity: CAUCASIAN; symptoms onset date: 3/1/04; diagnosis date: 3/15/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/16/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282954
sample_title: 5252 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 223; current medication: Prednisolone 20mg Asacol 2.4g; birth date: 1/18/44; ethnicity: CAUCASIAN; symptoms onset date: 3/1/04; diagnosis date: 3/15/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/16/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282955

Uncertain

5253 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282955
sample_title: 5253 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282956

Uncertain

5254 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282956
sample_title: 5254 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282957

Uncertain

5255 UC Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed terminal ileum
Characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282957
sample_title: 5255 UC Uninflamed terminal ileum
source_name: UC Uninflamed terminal ileum
characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282958

Uncertain

5256 UC Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed terminal ileum
Characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282958
sample_title: 5256 UC Uninflamed terminal ileum
source_name: UC Uninflamed terminal ileum
characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282959

Uncertain

5257 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 228; current medication: None; birth date: 11/22/48; ethnicity: CAUCASIAN; symptoms onset date: 1/1/80; diagnosis date: 1/1/82; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 1/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Migraines; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282959
sample_title: 5257 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 228; current medication: None; birth date: 11/22/48; ethnicity: CAUCASIAN; symptoms onset date: 1/1/80; diagnosis date: 1/1/82; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 1/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Migraines; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282960

Uncertain

5258 UC Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed terminal ileum
Characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282960
sample_title: 5258 UC Uninflamed terminal ileum
source_name: UC Uninflamed terminal ileum
characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282961

Uncertain

5259 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282961
sample_title: 5259 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282962

Uncertain

5260 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 202; current medication: Sulphasalazine 3g/d, Folic Acid 5mg/d, HRT, DF118; birth date: 10/3/50; ethnicity: CAUCASIAN; symptoms onset date: 1/1/68; diagnosis date: 1/1/69; joint problems: TRUE; uc flare up: TRUE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Polymyalgia rheumatica; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282962
sample_title: 5260 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 202; current medication: Sulphasalazine 3g/d, Folic Acid 5mg/d, HRT, DF118; birth date: 10/3/50; ethnicity: CAUCASIAN; symptoms onset date: 1/1/68; diagnosis date: 1/1/69; joint problems: TRUE; uc flare up: TRUE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Polymyalgia rheumatica; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282963

Uncertain

5261 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 203; current medication: Asacol 800mg BD, Simvastatin; birth date: 1/10/35; ethnicity: CAUCASIAN; symptoms onset date: 11/1/92; diagnosis date: 3/23/93; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/1/04; ucss: 1; calprotectin: 0; esr: 14; crp: 0; hb: 147; wcc: 6; neutrophils: 4; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: HISTOLOGICAL; diagnosis recto sigmoid: HISTOLOGICAL; diagnosis splen flex: HISTOLOGICAL; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/57; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282963
sample_title: 5261 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 203; current medication: Asacol 800mg BD, Simvastatin; birth date: 1/10/35; ethnicity: CAUCASIAN; symptoms onset date: 11/1/92; diagnosis date: 3/23/93; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/1/04; ucss: 1; calprotectin: 0; esr: 14; crp: 0; hb: 147; wcc: 6; neutrophils: 4; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: HISTOLOGICAL; diagnosis recto sigmoid: HISTOLOGICAL; diagnosis splen flex: HISTOLOGICAL; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/57; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282964

Uncertain

5262 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 204; current medication: AZA 200mg, Insulin, Asprin, Atenolol, Simvastatin; birth date: 8/15/43; ethnicity: CAUCASIAN; symptoms onset date: 7/1/02; diagnosis date: 8/1/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/1/04; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 0; nod 702: 0; nod 908: 0; dlg5 133a: 0; nod 1007 fs: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/58; smoking stop date: 1/1/01; smoking amount: 25+; other illnesses: Type 2 DM 02/2004.-Gout.; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282964
sample_title: 5262 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 204; current medication: AZA 200mg, Insulin, Asprin, Atenolol, Simvastatin; birth date: 8/15/43; ethnicity: CAUCASIAN; symptoms onset date: 7/1/02; diagnosis date: 8/1/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/1/04; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 0; nod 702: 0; nod 908: 0; dlg5 133a: 0; nod 1007 fs: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/58; smoking stop date: 1/1/01; smoking amount: 25+; other illnesses: Type 2 DM 02/2004.-Gout.; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282965

Uncertain

5263 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 209; current medication: AZA 150mg/d, Mesalazine 800mg TDS; birth date: 3/27/80; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 10/15/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/15/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282965
sample_title: 5263 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 209; current medication: AZA 150mg/d, Mesalazine 800mg TDS; birth date: 3/27/80; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 10/15/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/15/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 1-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282966

Uncertain

5264 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 212; current medication: Pred 10mg, AZA150mg, ADCAL D3; birth date: 8/3/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/97; diagnosis date: 9/1/01; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/9/04; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 0; igr2198: 11; igr2230: 12; octn1: 11; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/9/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282966
sample_title: 5264 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 212; current medication: Pred 10mg, AZA150mg, ADCAL D3; birth date: 8/3/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/97; diagnosis date: 9/1/01; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/9/04; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 0; igr2198: 11; igr2230: 12; octn1: 11; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/9/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282967

Uncertain

5265 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 214; current medication: NONE; birth date: 1/10/37; ethnicity: CAUCASIAN; symptoms onset date: 1/1/59; diagnosis date: 1/10/61; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 11/12/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/9/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: CENTRAL RETINAL VEIN OCCLUSION 01/04; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282967
sample_title: 5265 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 214; current medication: NONE; birth date: 1/10/37; ethnicity: CAUCASIAN; symptoms onset date: 1/1/59; diagnosis date: 1/10/61; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 11/12/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/9/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: CENTRAL RETINAL VEIN OCCLUSION 01/04; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282968

Uncertain

5266 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282968
sample_title: 5266 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282969

Uncertain

5267 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 221; current medication: Prednisolone 7mg Asacol Adcal Seretide Fe SO4; birth date: 1/29/86; ethnicity: CAUCASIAN; symptoms onset date: 12/10/01; diagnosis date: 12/10/01; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: Asthma Eczema; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282969
sample_title: 5267 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 221; current medication: Prednisolone 7mg Asacol Adcal Seretide Fe SO4; birth date: 1/29/86; ethnicity: CAUCASIAN; symptoms onset date: 12/10/01; diagnosis date: 12/10/01; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: Asthma Eczema; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282970

Uncertain

5268 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 222; current medication: Prednisolone 20mg Balsalazide; birth date: 4/13/52; ethnicity: CAUCASIAN; symptoms onset date: 9/1/85; diagnosis date: 6/20/86; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 12/16/04; ucss: 9; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282970
sample_title: 5268 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 222; current medication: Prednisolone 20mg Balsalazide; birth date: 4/13/52; ethnicity: CAUCASIAN; symptoms onset date: 9/1/85; diagnosis date: 6/20/86; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 12/16/04; ucss: 9; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 5-25-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282971

Uncertain

5269 UC Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed terminal ileum
Characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282971
sample_title: 5269 UC Uninflamed terminal ileum
source_name: UC Uninflamed terminal ileum
characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM282972

Uncertain

5270 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282972
sample_title: 5270 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282973

Uncertain

5271 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 227; current medication: Asacol Prednisolone 5 Omeprazole Warfarin Cal VitD; birth date: 4/17/28; ethnicity: CAUCASIAN; symptoms onset date: 1/1/90; diagnosis date: 1/1/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/14/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/72; smoking amount: 5-14; other illnesses: Prostate cancer 1985, Previous DVT's on warfarin; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282973
sample_title: 5271 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 227; current medication: Asacol Prednisolone 5 Omeprazole Warfarin Cal VitD; birth date: 4/17/28; ethnicity: CAUCASIAN; symptoms onset date: 1/1/90; diagnosis date: 1/1/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/14/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/72; smoking amount: 5-14; other illnesses: Prostate cancer 1985, Previous DVT's on warfarin; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282974

Uncertain

5272 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 231; current medication: prednisolone 40mg heparin clarithromycin; birth date: 10/29/77; ethnicity: CAUCASIAN; symptoms onset date: 10/1/00; diagnosis date: 11/19/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/28/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282974
sample_title: 5272 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 231; current medication: prednisolone 40mg heparin clarithromycin; birth date: 10/29/77; ethnicity: CAUCASIAN; symptoms onset date: 10/1/00; diagnosis date: 11/19/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/28/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM282975

Uncertain

5273 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282975
sample_title: 5273 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 6-2-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282976

Uncertain

5274 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 204; current medication: AZA 200mg, Insulin, Asprin, Atenolol, Simvastatin; birth date: 8/15/43; ethnicity: CAUCASIAN; symptoms onset date: 7/1/02; diagnosis date: 8/1/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/1/04; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 0; nod 702: 0; nod 908: 0; dlg5 133a: 0; nod 1007 fs: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/58; smoking stop date: 1/1/01; smoking amount: 25+; other illnesses: Type 2 DM 02/2004.-Gout.; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282976
sample_title: 5274 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 204; current medication: AZA 200mg, Insulin, Asprin, Atenolol, Simvastatin; birth date: 8/15/43; ethnicity: CAUCASIAN; symptoms onset date: 7/1/02; diagnosis date: 8/1/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 11/1/04; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 12; igr2230: 12; octn1: 12; octn2: 0; nod 702: 0; nod 908: 0; dlg5 133a: 0; nod 1007 fs: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/1/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 12/16/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/58; smoking stop date: 1/1/01; smoking amount: 25+; other illnesses: Type 2 DM 02/2004.-Gout.; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282977

Uncertain

5275 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282977
sample_title: 5275 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282978

Uncertain

5276 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282978
sample_title: 5276 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282979

Uncertain

5278 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282979
sample_title: 5278 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282980

Uncertain

5279 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 214; current medication: NONE; birth date: 1/10/37; ethnicity: CAUCASIAN; symptoms onset date: 1/1/59; diagnosis date: 1/10/61; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 11/12/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/9/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: CENTRAL RETINAL VEIN OCCLUSION 01/04; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282980
sample_title: 5279 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 214; current medication: NONE; birth date: 1/10/37; ethnicity: CAUCASIAN; symptoms onset date: 1/1/59; diagnosis date: 1/10/61; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 11/12/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 12/9/04; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: CENTRAL RETINAL VEIN OCCLUSION 01/04; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM282981

Uncertain

5280 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282981
sample_title: 5280 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 215; current medication: Prednisolone 5ng Balsalazide Lansoperazole; birth date: 5/6/60; ethnicity: CAUCASIAN; symptoms onset date: 5/1/02; diagnosis date: 8/16/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/16/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: unknown; last followup date: 11/16/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/03; smoking stop date: 1/1/04; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282982

Uncertain

5281 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 221; current medication: Prednisolone 7mg Asacol Adcal Seretide Fe SO4; birth date: 1/29/86; ethnicity: CAUCASIAN; symptoms onset date: 12/10/01; diagnosis date: 12/10/01; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: Asthma Eczema; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282982
sample_title: 5281 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 221; current medication: Prednisolone 7mg Asacol Adcal Seretide Fe SO4; birth date: 1/29/86; ethnicity: CAUCASIAN; symptoms onset date: 12/10/01; diagnosis date: 12/10/01; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/14/04; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/14/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: Asthma Eczema; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM282983

Uncertain

5282 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282983
sample_title: 5282 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 226; current medication: Azathioprine 150mg Asacol 1.6g Ca Vit D B12; birth date: 6/15/74; ethnicity: CAUCASIAN; symptoms onset date: 1/1/89; diagnosis date: 1/1/89; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 1/11/05; ucss: 8; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/11/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: current; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282984

Uncertain

5283 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 227; current medication: Asacol Prednisolone 5 Omeprazole Warfarin Cal VitD; birth date: 4/17/28; ethnicity: CAUCASIAN; symptoms onset date: 1/1/90; diagnosis date: 1/1/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/14/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/72; smoking amount: 5-14; other illnesses: Prostate cancer 1985, Previous DVT's on warfarin; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282984
sample_title: 5283 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 227; current medication: Asacol Prednisolone 5 Omeprazole Warfarin Cal VitD; birth date: 4/17/28; ethnicity: CAUCASIAN; symptoms onset date: 1/1/90; diagnosis date: 1/1/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/14/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/72; smoking amount: 5-14; other illnesses: Prostate cancer 1985, Previous DVT's on warfarin; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM282985

Uncertain

5284 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 231; current medication: prednisolone 40mg heparin clarithromycin; birth date: 10/29/77; ethnicity: CAUCASIAN; symptoms onset date: 10/1/00; diagnosis date: 11/19/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/28/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282985
sample_title: 5284 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 231; current medication: prednisolone 40mg heparin clarithromycin; birth date: 10/29/77; ethnicity: CAUCASIAN; symptoms onset date: 10/1/00; diagnosis date: 11/19/02; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/28/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM282986

Uncertain

5285 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282986
sample_title: 5285 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 232; current medication: Pentaza 2g BD; birth date: 1/9/63; ethnicity: CAUCASIAN; symptoms onset date: 1/1/95; diagnosis date: 1/1/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/31/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 1/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM282987

Uncertain

11098 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282987
sample_title: 11098 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282988

Uncertain

11099 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282988
sample_title: 11099 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282989

Uncertain

11100 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282989
sample_title: 11100 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282990

Uncertain

11101 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 219; current medication: Sulphasalazine 1.2g Colifoam; birth date: 1/5/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/81; diagnosis date: 1/1/81; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/7/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282990
sample_title: 11101 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 219; current medication: Sulphasalazine 1.2g Colifoam; birth date: 1/5/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/81; diagnosis date: 1/1/81; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/7/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/7/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282991

Uncertain

11102 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282991
sample_title: 11102 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282992

Uncertain

11103 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282992
sample_title: 11103 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282993

Uncertain

11104 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282993
sample_title: 11104 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282994

Uncertain

11105 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 228; current medication: None; birth date: 11/22/48; ethnicity: CAUCASIAN; symptoms onset date: 1/1/80; diagnosis date: 1/1/82; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 1/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Migraines; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282994
sample_title: 11105 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 228; current medication: None; birth date: 11/22/48; ethnicity: CAUCASIAN; symptoms onset date: 1/1/80; diagnosis date: 1/1/82; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 1/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Migraines; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282995

Uncertain

11106 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 230; current medication: Asacol 1.6g/ day; birth date: 12/27/57; ethnicity: CAUCASIAN; symptoms onset date: 3/12/02; diagnosis date: 12/3/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/25/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/25/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: ? MS never proven; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282995
sample_title: 11106 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 230; current medication: Asacol 1.6g/ day; birth date: 12/27/57; ethnicity: CAUCASIAN; symptoms onset date: 3/12/02; diagnosis date: 12/3/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/25/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/25/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: ? MS never proven; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM282996

Uncertain

11408 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 235; current medication: Asacol Predfoam Lanzoprazole; birth date: 1/9/47; ethnicity: CAUCASIAN; symptoms onset date: 6/24/97; diagnosis date: 8/26/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/11/05; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/11/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/97; smoking amount: 15-24; other illnesses: TURP; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282996
sample_title: 11408 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 235; current medication: Asacol Predfoam Lanzoprazole; birth date: 1/9/47; ethnicity: CAUCASIAN; symptoms onset date: 6/24/97; diagnosis date: 8/26/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/11/05; ucss: 5; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/11/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: ex; smoking stop date: 1/1/97; smoking amount: 15-24; other illnesses: TURP; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM282997

Uncertain

11409 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282997
sample_title: 11409 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM282998

Uncertain

11410 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282998
sample_title: 11410 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM282999

Uncertain

11411 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM282999
sample_title: 11411 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 241; current medication: Asacol 800mg bd Azathioprine 100mg; birth date: 6/25/62; ethnicity: CAUCASIAN; symptoms onset date: 11/1/90; diagnosis date: 11/11/91; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/10/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 22; igr2198: 22; igr2230: 22; octn1: 22; octn2: 22; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/10/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283000

Uncertain

11413 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283000
sample_title: 11413 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 201; current medication: None; birth date: 4/12/56; ethnicity: CAUCASIAN; symptoms onset date: 6/19/03; diagnosis date: 7/4/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 9/30/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 9/30/04; followup rectum: BOTH; followup recto sigmoid: HISTOLOGICAL; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/7/04; category: FAILURE OF THERAPY; smoking status: ex; smoking start date: 1/1/70; smoking stop date: 1/1/99; smoking amount: 25+; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283001

Uncertain

11415 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283001
sample_title: 11415 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 206; current medication: Asacol 800mg BD; birth date: 9/10/59; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/80; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/8/04; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/8/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283002

Uncertain

11417 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283002
sample_title: 11417 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 210; current medication: Mesalazine 800mg B, Prednisolone Supps; birth date: 6/28/56; ethnicity: CAUCASIAN; symptoms onset date: 1/1/73; diagnosis date: 1/10/74; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 10/19/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 10/14/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Scarlet Fever 1964; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283003

Uncertain

11418 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 213; current medication: PRED 7MG, ATENOLOL 100MG, ASPRIN 75MG, SIMVASTATI; birth date: 11/1/43; ethnicity: CAUCASIAN; symptoms onset date: 3/1/82; diagnosis date: 2/2/83; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/12/04; followup rectum: COLONOSCOPIC; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/74; smoking amount: unknown; other illnesses: ISCHEAMIC HEART DISEASE; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283003
sample_title: 11418 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 213; current medication: PRED 7MG, ATENOLOL 100MG, ASPRIN 75MG, SIMVASTATI; birth date: 11/1/43; ethnicity: CAUCASIAN; symptoms onset date: 3/1/82; diagnosis date: 2/2/83; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/12/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/12/04; followup rectum: COLONOSCOPIC; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/74; smoking amount: unknown; other illnesses: ISCHEAMIC HEART DISEASE; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283004

Uncertain

11419 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283004
sample_title: 11419 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 216; current medication: NONE; birth date: 5/10/36; ethnicity: CAUCASIAN; symptoms onset date: 2/19/66; diagnosis date: 8/20/66; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/18/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/18/04; followup rectum: unknown; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 12/9/04; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: NONE; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283005

Uncertain

11420 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283005
sample_title: 11420 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 217; current medication: Asacol 1.2g daily; birth date: 2/9/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/10/79; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 11/26/04; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 11/26/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283006

Uncertain

11421 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283006
sample_title: 11421 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 218; current medication: Sulphasalazine Asprin Metoprolol Atorvastatin; birth date: 9/27/24; ethnicity: CAUCASIAN; symptoms onset date: 1/1/58; diagnosis date: 1/1/58; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/3/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/3/04; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Breast cancer; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283007

Uncertain

11422 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283007
sample_title: 11422 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 220; current medication: Asacol 800mg BFZ 2.5mg Metformin Simvastatin; birth date: 6/28/48; ethnicity: CAUCASIAN; symptoms onset date: 1/10/95; diagnosis date: 3/25/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/10/04; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 12/10/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/90; smoking amount: 5-14; other illnesses: Type 2 DM.; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283008

Uncertain

11423 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 223; current medication: Prednisolone 20mg Asacol 2.4g; birth date: 1/18/44; ethnicity: CAUCASIAN; symptoms onset date: 3/1/04; diagnosis date: 3/15/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/16/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283008
sample_title: 11423 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 223; current medication: Prednisolone 20mg Asacol 2.4g; birth date: 1/18/44; ethnicity: CAUCASIAN; symptoms onset date: 3/1/04; diagnosis date: 3/15/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 12/16/04; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 12/16/04; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: unknown; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283009

Uncertain

11424 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283009
sample_title: 11424 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 224; current medication: Salazopyrin BFZ Losartan Thyroxine Doxazosin; birth date: 2/21/38; ethnicity: CAUCASIAN; symptoms onset date: 1/1/77; diagnosis date: 1/1/77; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 12; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/4/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: Hypertension Hashimoto's Thyroditis; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283010

Uncertain

11425 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283010
sample_title: 11425 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 225; current medication: Asacol; birth date: 5/30/76; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/2/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 1/6/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 1/6/05; followup rectum: BOTH; followup recto sigmoid: unknown; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/99; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283011

Uncertain

11426 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283011
sample_title: 11426 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 233; current medication: Asacol 1.2g Asprin 75mg Amilodipine 10mg; birth date: 2/2/29; ethnicity: CAUCASIAN; symptoms onset date: 1/1/92; diagnosis date: 1/1/92; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/1/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/1/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 3/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/86; smoking amount: 15-24; other illnesses: MI 1986, Prostate cancer 1994; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283012

Uncertain

11428 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283012
sample_title: 11428 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283013

Uncertain

11429 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283013
sample_title: 11429 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283014

Uncertain

11430 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283014
sample_title: 11430 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 234; current medication: Aza 150mg Atenolol Atorvastatin BFZ Clopidogril; birth date: 9/29/46; ethnicity: CAUCASIAN; symptoms onset date: 2/1/88; diagnosis date: 9/29/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 2/3/05; ucss: 4; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 2/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: IHD Angina; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283015

Uncertain

11431 UC Uninflamed terminal ileum

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed terminal ileum
Characteristics: patient: 236; current medication: None; birth date: 11/20/53; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/18/05; ucss: 15; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 2/18/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking start date: 1/1/71; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283015
sample_title: 11431 UC Uninflamed terminal ileum
source_name: UC Uninflamed terminal ileum
characteristics: patient: 236; current medication: None; birth date: 11/20/53; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/18/05; ucss: 15; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 2/18/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking start date: 1/1/71; smoking amount: 15-24; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: terminal ileum; inflammation_status: Uninflamed

GSM283016

Uncertain

11432 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 237; current medication: Omep 20mg Losartan 50mg Bisoprolol 5mg Prav 40mg; birth date: 11/12/28; ethnicity: CAUCASIAN; symptoms onset date: 10/1/95; diagnosis date: 11/13/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/18/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/5/03; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/52; smoking amount: 0-4; other illnesses: Hypercholesteremia Prev CABG; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283016
sample_title: 11432 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 237; current medication: Omep 20mg Losartan 50mg Bisoprolol 5mg Prav 40mg; birth date: 11/12/28; ethnicity: CAUCASIAN; symptoms onset date: 10/1/95; diagnosis date: 11/13/95; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 2/18/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/5/03; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking start date: 1/1/50; smoking stop date: 1/1/52; smoking amount: 0-4; other illnesses: Hypercholesteremia Prev CABG; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM283017

Uncertain

11434 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 239; current medication: Asacol Fybogel Amitriptiline; birth date: 4/10/41; ethnicity: CAUCASIAN; symptoms onset date: 12/1/63; diagnosis date: 12/12/64; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283017
sample_title: 11434 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 239; current medication: Asacol Fybogel Amitriptiline; birth date: 4/10/41; ethnicity: CAUCASIAN; symptoms onset date: 12/1/63; diagnosis date: 12/12/64; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 1; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283018

Uncertain

11436 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 240; current medication: Asacol 800mg BD; birth date: 1/10/59; ethnicity: ASIAN; symptoms onset date: 8/2/04; diagnosis date: 12/14/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283018
sample_title: 11436 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 240; current medication: Asacol 800mg BD; birth date: 1/10/59; ethnicity: ASIAN; symptoms onset date: 8/2/04; diagnosis date: 12/14/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283019

Uncertain

11437 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 240; current medication: Asacol 800mg BD; birth date: 1/10/59; ethnicity: ASIAN; symptoms onset date: 8/2/04; diagnosis date: 12/14/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283019
sample_title: 11437 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 240; current medication: Asacol 800mg BD; birth date: 1/10/59; ethnicity: ASIAN; symptoms onset date: 8/2/04; diagnosis date: 12/14/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/3/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/3/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/31/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283020

Uncertain

11439 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 242; current medication: Salazopyrin Folic acid; birth date: 10/18/39; ethnicity: CAUCASIAN; symptoms onset date: 1/1/75; diagnosis date: 1/1/75; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/22/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283020
sample_title: 11439 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 242; current medication: Salazopyrin Folic acid; birth date: 10/18/39; ethnicity: CAUCASIAN; symptoms onset date: 1/1/75; diagnosis date: 1/1/75; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/22/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM283021

Uncertain

11440 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 242; current medication: Salazopyrin Folic acid; birth date: 10/18/39; ethnicity: CAUCASIAN; symptoms onset date: 1/1/75; diagnosis date: 1/1/75; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/22/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283021
sample_title: 11440 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 242; current medication: Salazopyrin Folic acid; birth date: 10/18/39; ethnicity: CAUCASIAN; symptoms onset date: 1/1/75; diagnosis date: 1/1/75; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/22/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 3/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 7/7/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM283022

Uncertain

11441 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283022
sample_title: 11441 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283023

Uncertain

11442 UC Uninflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed descending colon
Characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283023
sample_title: 11442 UC Uninflamed descending colon
source_name: UC Uninflamed descending colon
characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: descending colon; inflammation_status: Uninflamed

GSM283024

Uncertain

11443 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283024
sample_title: 11443 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 244; current medication: Seratide Bricanyl BFZ; birth date: 1/29/55; ethnicity: CAUCASIAN; symptoms onset date: 1/1/03; diagnosis date: 6/16/03; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 3/29/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 3/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 6/1/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/94; smoking amount: 15-24; other illnesses: Asthma Hypertension; disease: UC; run_date: 8-9-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM283025

Uncertain

12463 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 250; current medication: Asacol 2.4g/d; birth date: 1/27/58; ethnicity: ASIAN; symptoms onset date: 1/1/94; diagnosis date: 5/30/94; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/29/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 4/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283025
sample_title: 12463 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 250; current medication: Asacol 2.4g/d; birth date: 1/27/58; ethnicity: ASIAN; symptoms onset date: 1/1/94; diagnosis date: 5/30/94; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/29/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 4/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283026

Uncertain

12464 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 250; current medication: Asacol 2.4g/d; birth date: 1/27/58; ethnicity: ASIAN; symptoms onset date: 1/1/94; diagnosis date: 5/30/94; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/29/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 4/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283026
sample_title: 12464 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 250; current medication: Asacol 2.4g/d; birth date: 1/27/58; ethnicity: ASIAN; symptoms onset date: 1/1/94; diagnosis date: 5/30/94; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/29/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 11; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 4/29/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/95; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283027

Uncertain

12465 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283027
sample_title: 12465 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283028

Uncertain

12466 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283028
sample_title: 12466 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283029

Uncertain

12467 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283029
sample_title: 12467 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 253; current medication: Asacol 800mg BD; birth date: 3/14/58; ethnicity: CAUCASIAN; symptoms onset date: 8/24/97; diagnosis date: 9/4/97; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/24/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/24/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/3/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283030

Uncertain

12468 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 254; current medication: Asacol 800mg TDS, Predfoam; birth date: 7/25/59; ethnicity: ASIAN; symptoms onset date: 1/1/00; diagnosis date: 11/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283030
sample_title: 12468 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 254; current medication: Asacol 800mg TDS, Predfoam; birth date: 7/25/59; ethnicity: ASIAN; symptoms onset date: 1/1/00; diagnosis date: 11/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283031

Uncertain

12469 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283031
sample_title: 12469 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283032

Uncertain

12470 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283032
sample_title: 12470 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283033

Uncertain

12471 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283033
sample_title: 12471 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 255; current medication: Asacol 800mg BD; birth date: 3/14/77; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 5/31/05; ucss: 0; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 5/31/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/01; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283034

Uncertain

12472 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 257; current medication: 6MP 50mg; birth date: 5/16/64; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 2/1/05; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283034
sample_title: 12472 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 257; current medication: 6MP 50mg; birth date: 5/16/64; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 2/1/05; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283035

Uncertain

12473 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 257; current medication: 6MP 50mg; birth date: 5/16/64; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 2/1/05; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283035
sample_title: 12473 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 257; current medication: 6MP 50mg; birth date: 5/16/64; ethnicity: CAUCASIAN; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: unknown; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/2/05; ucss: 7; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: unknown; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/2/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 9/14/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 2/1/05; smoking amount: 0-4; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283036

Uncertain

12474 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 258; current medication: Azathioprine 200mg Pentaza 1g TDS; birth date: 10/26/64; ethnicity: CAUCASIAN; symptoms onset date: 6/1/87; diagnosis date: 6/1/88; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283036
sample_title: 12474 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 258; current medication: Azathioprine 200mg Pentaza 1g TDS; birth date: 10/26/64; ethnicity: CAUCASIAN; symptoms onset date: 6/1/87; diagnosis date: 6/1/88; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283037

Uncertain

12475 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 259; current medication: pentaza 2g D; birth date: 9/20/78; ethnicity: CAUCASIAN; symptoms onset date: 8/1/03; diagnosis date: 1/13/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283037
sample_title: 12475 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 259; current medication: pentaza 2g D; birth date: 9/20/78; ethnicity: CAUCASIAN; symptoms onset date: 8/1/03; diagnosis date: 1/13/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283038

Uncertain

12476 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 259; current medication: pentaza 2g D; birth date: 9/20/78; ethnicity: CAUCASIAN; symptoms onset date: 8/1/03; diagnosis date: 1/13/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283038
sample_title: 12476 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 259; current medication: pentaza 2g D; birth date: 9/20/78; ethnicity: CAUCASIAN; symptoms onset date: 8/1/03; diagnosis date: 1/13/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/7/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/7/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 1/1/03; smoking amount: 5-14; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283039

Uncertain

12477 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283039
sample_title: 12477 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283040

Uncertain

12478 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283040
sample_title: 12478 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283041

Uncertain

12479 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283041
sample_title: 12479 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 261; current medication: Asacol 800mg BD; birth date: 1/7/57; ethnicity: CAUCASIAN; symptoms onset date: 1/1/98; diagnosis date: 1/1/98; joint problems: FALSE; uc flare up: FALSE; family history: TRUE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/14/05; ucss: 2; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 2; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/14/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM283042

Uncertain

12480 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 263; current medication: Azathioprine 75mg Fosomax 70mg; birth date: 11/9/58; ethnicity: CAUCASIAN; symptoms onset date: 3/1/00; diagnosis date: 6/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 7/8/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283042
sample_title: 12480 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 263; current medication: Azathioprine 75mg Fosomax 70mg; birth date: 11/9/58; ethnicity: CAUCASIAN; symptoms onset date: 3/1/00; diagnosis date: 6/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 7/8/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283043

Uncertain

12481 UC Uninflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed sigmoid colon
Characteristics: patient: 263; current medication: Azathioprine 75mg Fosomax 70mg; birth date: 11/9/58; ethnicity: CAUCASIAN; symptoms onset date: 3/1/00; diagnosis date: 6/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 7/8/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283043
sample_title: 12481 UC Uninflamed sigmoid colon
source_name: UC Uninflamed sigmoid colon
characteristics: patient: 263; current medication: Azathioprine 75mg Fosomax 70mg; birth date: 11/9/58; ethnicity: CAUCASIAN; symptoms onset date: 3/1/00; diagnosis date: 6/1/00; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: TRUE; procedure date: 7/8/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Uninflamed

GSM283044

Uncertain

12482 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283044
sample_title: 12482 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283045

Uncertain

12483 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283045
sample_title: 12483 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283046

Uncertain

12484 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283046
sample_title: 12484 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 265; current medication: Pentaza 500mg TDS; birth date: 8/17/71; ethnicity: CAUCASIAN; symptoms onset date: 2/5/04; diagnosis date: 3/22/04; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/19/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/19/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 0-4; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283047

Uncertain

12485 UC Inflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed ascending colon
Characteristics: patient: 267; current medication: Mesalazine 800mg TDS; birth date: 8/16/74; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; diagnosis date: 5/10/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/15/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/20/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 9/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 5/1/03; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283047
sample_title: 12485 UC Inflamed ascending colon
source_name: UC Inflamed ascending colon
characteristics: patient: 267; current medication: Mesalazine 800mg TDS; birth date: 8/16/74; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; diagnosis date: 5/10/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/15/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/20/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 9/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 5/1/03; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Inflamed

GSM283048

Uncertain

12486 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 267; current medication: Mesalazine 800mg TDS; birth date: 8/16/74; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; diagnosis date: 5/10/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/15/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/20/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 9/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 5/1/03; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283048
sample_title: 12486 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 267; current medication: Mesalazine 800mg TDS; birth date: 8/16/74; ethnicity: CAUCASIAN; symptoms onset date: 5/1/05; diagnosis date: 5/10/05; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 8/15/05; ucss: 1; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 9/20/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 9/30/05; category: DISEASE IN REMISSION; smoking status: ex; smoking stop date: 5/1/03; smoking amount: 5-14; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283049

Uncertain

12487 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 249; current medication: Azathioprine 150mg Salazopyrine; birth date: 1/12/60; ethnicity: CAUCASIAN; symptoms onset date: 3/1/90; diagnosis date: 3/24/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/8/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 4/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283049
sample_title: 12487 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 249; current medication: Azathioprine 150mg Salazopyrine; birth date: 1/12/60; ethnicity: CAUCASIAN; symptoms onset date: 3/1/90; diagnosis date: 3/24/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/8/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 4/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283050

Uncertain

12488 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 249; current medication: Azathioprine 150mg Salazopyrine; birth date: 1/12/60; ethnicity: CAUCASIAN; symptoms onset date: 3/1/90; diagnosis date: 3/24/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/8/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 4/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283050
sample_title: 12488 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 249; current medication: Azathioprine 150mg Salazopyrine; birth date: 1/12/60; ethnicity: CAUCASIAN; symptoms onset date: 3/1/90; diagnosis date: 3/24/90; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: FALSE; aza at present: FALSE; procedure date: 4/8/05; ucss: 3; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 12; igr2198: 12; igr2230: 12; octn1: 12; octn2: 12; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 12; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 4/8/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 5/30/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: None; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283051

Uncertain

12489 UC Uninflamed ascending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Uninflamed ascending colon
Characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283051
sample_title: 12489 UC Uninflamed ascending colon
source_name: UC Uninflamed ascending colon
characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: ascending colon; inflammation_status: Uninflamed

GSM283052

Uncertain

12490 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283052
sample_title: 12490 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283053

Uncertain

12491 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283053
sample_title: 12491 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 260; current medication: asacol 800mg TDS Asprin coproxamol; birth date: 1/1/54; ethnicity: CAUCASIAN; symptoms onset date: 1/1/79; diagnosis date: 1/1/79; joint problems: FALSE; uc flare up: TRUE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 6/9/05; ucss: 12; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: TRUE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: unknown; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 6/9/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: DISEASE IN REMISSION; smoking status: current; smoking amount: 5-14; other illnesses: Arthritis Depression Alcohol excess; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283054

Uncertain

12492 UC Inflamed descending colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed descending colon
Characteristics: patient: 262; current medication: Asacol 2.4g co-codamol; birth date: 7/17/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/87; diagnosis date: 1/1/87; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 7/5/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/5/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283054
sample_title: 12492 UC Inflamed descending colon
source_name: UC Inflamed descending colon
characteristics: patient: 262; current medication: Asacol 2.4g co-codamol; birth date: 7/17/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/87; diagnosis date: 1/1/87; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 7/5/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/5/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: descending colon; inflammation_status: Inflamed

GSM283055

Uncertain

12493 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 262; current medication: Asacol 2.4g co-codamol; birth date: 7/17/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/87; diagnosis date: 1/1/87; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 7/5/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/5/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283055
sample_title: 12493 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 262; current medication: Asacol 2.4g co-codamol; birth date: 7/17/43; ethnicity: CAUCASIAN; symptoms onset date: 1/1/87; diagnosis date: 1/1/87; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: YES; aza tolerant: TRUE; aza at present: FALSE; procedure date: 7/5/05; ucss: 6; calprotectin: 0; esr: 0; crp: 0; hb: 0; wcc: 0; neutrophils: 0; albumin: 0; blood obtained: FALSE; ibd affected relatives: 0; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: unknown; diagnosis hep flex: unknown; diagnosis total: unknown; last followup date: 7/5/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: unknown; followup hep flex: unknown; followup total: unknown; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: none; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

GSM283056

Uncertain

12494 UC Inflamed sigmoid colon

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: UC Inflamed sigmoid colon
Characteristics: patient: 266; current medication: Prednisolone ciproxin mesalazine fosomax Fe SO4; birth date: 8/12/40; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/22/05; ucss: 6; calprotectin: 700; esr: 0; crp: 20; hb: 93; wcc: 17; neutrophils: 16; albumin: 23; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 0; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: COPD-Previous severe pneumonia; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM283056
sample_title: 12494 UC Inflamed sigmoid colon
source_name: UC Inflamed sigmoid colon
characteristics: patient: 266; current medication: Prednisolone ciproxin mesalazine fosomax Fe SO4; birth date: 8/12/40; ethnicity: CAUCASIAN; symptoms onset date: 1/1/93; diagnosis date: 1/1/93; joint problems: FALSE; uc flare up: FALSE; family history: FALSE; aza treated: NO; aza tolerant: FALSE; aza at present: FALSE; procedure date: 7/22/05; ucss: 6; calprotectin: 700; esr: 0; crp: 20; hb: 93; wcc: 17; neutrophils: 16; albumin: 23; blood obtained: FALSE; ibd affected relatives: 0; igr2096: 0; igr2198: 11; igr2230: 11; octn1: 11; octn2: 11; nod 702: 11; nod 908: 11; dlg5 133a: 11; nod 1007 fs: 11; diagnosis rectum: BOTH; diagnosis recto sigmoid: BOTH; diagnosis splen flex: BOTH; diagnosis hep flex: BOTH; diagnosis total: BOTH; last followup date: 7/22/05; followup rectum: BOTH; followup recto sigmoid: BOTH; followup splen flex: BOTH; followup hep flex: BOTH; followup total: BOTH; casenote review date: 8/15/05; category: FAILURE OF THERAPY; smoking status: never; smoking amount: unknown; other illnesses: COPD-Previous severe pneumonia; disease: UC; run_date: 11-15-01; anatomic_location: sigmoid colon; inflammation_status: Inflamed

Included samples (0)

Uncertain samples (199)