Matching samples

GSE1141 · Inflammatory bowel disease (HG-U133A)

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

4 case / 2 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (6)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM19135

Uncertain

IBD_Control Ileum (HG-U133A)

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • IBD_Control Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
        • IBD_Control Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • IBD_Control Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
          • IBD_Control Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
        Source metadata
        Source name
        mucosal biopsy (pool of 4 different donors)
        Characteristics
        none
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM19135
sample_title: IBD_Control Ileum (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

        GSM19137

        Uncertain

        IBD_Control Colon (HG-U133A)

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • IBD_Control Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
              • IBD_Control Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • IBD_Control Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                • IBD_Control Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
              Source metadata
              Source name
              mucosal biopsy (pool of 4 different donors)
              Characteristics
              none
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM19137
sample_title: IBD_Control Colon (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

              GSM19138

              Uncertain

              IBD_Crohn Ileum (HG-U133A)

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • IBD_Crohn Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                    • IBD_Crohn Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • IBD_Crohn Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                      • IBD_Crohn Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                    Source metadata
                    Source name
                    mucosal biopsy (pool of 4 different donors)
                    Characteristics
                    none
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM19138
sample_title: IBD_Crohn Ileum (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

                    GSM19139

                    Uncertain

                    IBD_Crohn Colon (HG-U133A)

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • IBD_Crohn Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                          • IBD_Crohn Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • IBD_Crohn Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                            • IBD_Crohn Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                          Source metadata
                          Source name
                          mucosal biopsy (pool of 4 different donors)
                          Characteristics
                          none
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM19139
sample_title: IBD_Crohn Colon (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

                          GSM19140

                          Uncertain

                          IBD_Colitis Ileum (HG-U133A)

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • IBD_Colitis Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                • IBD_Colitis Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • IBD_Colitis Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                  • IBD_Colitis Ileum (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                Source metadata
                                Source name
                                mucosal biopsy (pool of 4 different donors)
                                Characteristics
                                none
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM19140
sample_title: IBD_Colitis Ileum (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

                                GSM19141

                                Uncertain

                                IBD_Colitis Colon (HG-U133A)

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • IBD_Colitis Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                      • IBD_Colitis Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • IBD_Colitis Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                        • IBD_Colitis Colon (HG-U133A) mucosal biopsy (pool of 4 different donors) none
                                      Source metadata
                                      Source name
                                      mucosal biopsy (pool of 4 different donors)
                                      Characteristics
                                      none
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM19141
sample_title: IBD_Colitis Colon (HG-U133A)
source_name: mucosal biopsy (pool of 4 different donors)
characteristics: none

                                      Excluded samples (0)

                                      No excluded samples.