These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
20150528_MatterCancerRun3_C3_03
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C3_03 HCC 1st Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C3_03 HCC 1st Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C3_03 HCC 1st Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C3_03 HCC 1st Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208016
sample_title: 20150528_MatterCancerRun3_C3_03
source_name: HCC 1st Biopsy
characteristics: patient.id: 8; tissue: Liver tissue; fibrosis stage: F2; age: 36; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C4_04 HCC 2nd Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C4_04 HCC 2nd Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C4_04 HCC 2nd Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C4_04 HCC 2nd Biopsy patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208017
sample_title: 20150528_MatterCancerRun3_C4_04
source_name: HCC 2nd Biopsy
characteristics: patient.id: 8; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D4_04 HCC 1st Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D4_04 HCC 1st Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D4_04 HCC 1st Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D4_04 HCC 1st Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208018
sample_title: 20150528_MatterCancerRun4_D4_04
source_name: HCC 1st Biopsy
characteristics: patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D5_05 HCC 2nd Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D5_05 HCC 2nd Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D5_05 HCC 2nd Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D5_05 HCC 2nd Biopsy patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208019
sample_title: 20150528_MatterCancerRun4_D5_05
source_name: HCC 2nd Biopsy
characteristics: patient.id: 9; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D7_07 HCC 1st Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D7_07 HCC 1st Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D7_07 HCC 1st Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D7_07 HCC 1st Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208020
sample_title: 20150528_MatterCancerRun4_D7_07
source_name: HCC 1st Biopsy
characteristics: patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D8_08 HCC 2nd Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D8_08 HCC 2nd Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D8_08 HCC 2nd Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun4_D8_08 HCC 2nd Biopsy patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208021
sample_title: 20150528_MatterCancerRun4_D8_08
source_name: HCC 2nd Biopsy
characteristics: patient.id: 10; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D10_10 HCC 1st Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150528_MatterCancerRun4_D10_10 HCC 1st Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D10_10 HCC 1st Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150528_MatterCancerRun4_D10_10 HCC 1st Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208022
sample_title: 20150528_MatterCancerRun4_D10_10
source_name: HCC 1st Biopsy
characteristics: patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 34; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun4_D11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D11_11 HCC 2nd Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150528_MatterCancerRun4_D11_11 HCC 2nd Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun4_D11_11 HCC 2nd Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150528_MatterCancerRun4_D11_11 HCC 2nd Biopsy patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208023
sample_title: 20150528_MatterCancerRun4_D11_11
source_name: HCC 2nd Biopsy
characteristics: patient.id: 11; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M4_04 HCC 1st Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150624_MatterCancerRun11_M4_04 HCC 1st Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M4_04 HCC 1st Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150624_MatterCancerRun11_M4_04 HCC 1st Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208024
sample_title: 20150624_MatterCancerRun11_M4_04
source_name: HCC 1st Biopsy
characteristics: patient.id: 12; tissue: Liver tissue; fibrosis stage: F2; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M5_05 HCC 2nd Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150624_MatterCancerRun11_M5_05 HCC 2nd Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M5_05 HCC 2nd Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150624_MatterCancerRun11_M5_05 HCC 2nd Biopsy patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208025
sample_title: 20150624_MatterCancerRun11_M5_05
source_name: HCC 2nd Biopsy
characteristics: patient.id: 12; tissue: Liver tissue; fibrosis stage: F4; age: 69; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C5_05 HCC 1st Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C5_05 HCC 1st Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C5_05 HCC 1st Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C5_05 HCC 1st Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208026
sample_title: 20150528_MatterCancerRun3_C5_05
source_name: HCC 1st Biopsy
characteristics: patient.id: 13; tissue: Liver tissue; fibrosis stage: F2; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C6_06
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C6_06 HCC 2nd Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C6_06 HCC 2nd Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C6_06 HCC 2nd Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150528_MatterCancerRun3_C6_06 HCC 2nd Biopsy patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208027
sample_title: 20150528_MatterCancerRun3_C6_06
source_name: HCC 2nd Biopsy
characteristics: patient.id: 13; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E1_01 HCC 1st Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E1_01 HCC 1st Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E1_01 HCC 1st Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E1_01 HCC 1st Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208028
sample_title: 20150603_MatterCancerRun5_E1_01
source_name: HCC 1st Biopsy
characteristics: patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E2_02 HCC 2nd Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E2_02 HCC 2nd Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E2_02 HCC 2nd Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E2_02 HCC 2nd Biopsy patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208029
sample_title: 20150603_MatterCancerRun5_E2_02
source_name: HCC 2nd Biopsy
characteristics: patient.id: 14; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E4_04 HCC 1st Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E4_04 HCC 1st Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E4_04 HCC 1st Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E4_04 HCC 1st Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208030
sample_title: 20150603_MatterCancerRun5_E4_04
source_name: HCC 1st Biopsy
characteristics: patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E5_05 HCC 2nd Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E5_05 HCC 2nd Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E5_05 HCC 2nd Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E5_05 HCC 2nd Biopsy patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208031
sample_title: 20150603_MatterCancerRun5_E5_05
source_name: HCC 2nd Biopsy
characteristics: patient.id: 16; tissue: Liver tissue; fibrosis stage: F4; age: 73; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E6_06
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E6_06 HCC 1st Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E6_06 HCC 1st Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E6_06 HCC 1st Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E6_06 HCC 1st Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208032
sample_title: 20150603_MatterCancerRun5_E6_06
source_name: HCC 1st Biopsy
characteristics: patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E7_07 HCC 2nd Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E7_07 HCC 2nd Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E7_07 HCC 2nd Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun5_E7_07 HCC 2nd Biopsy patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208033
sample_title: 20150603_MatterCancerRun5_E7_07
source_name: HCC 2nd Biopsy
characteristics: patient.id: 17; tissue: Liver tissue; fibrosis stage: F4; age: 63; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E8_08 HCC 1st Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E8_08 HCC 1st Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E8_08 HCC 1st Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E8_08 HCC 1st Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208034
sample_title: 20150603_MatterCancerRun5_E8_08
source_name: HCC 1st Biopsy
characteristics: patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun5_E9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E9_09 HCC 2nd Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E9_09 HCC 2nd Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun5_E9_09 HCC 2nd Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150603_MatterCancerRun5_E9_09 HCC 2nd Biopsy patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208035
sample_title: 20150603_MatterCancerRun5_E9_09
source_name: HCC 2nd Biopsy
characteristics: patient.id: 18; tissue: Liver tissue; fibrosis stage: F4; age: 64; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O5_05 HCC 1st Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150625_MatterCancerRun13_O5_05 HCC 1st Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O5_05 HCC 1st Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150625_MatterCancerRun13_O5_05 HCC 1st Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208036
sample_title: 20150625_MatterCancerRun13_O5_05
source_name: HCC 1st Biopsy
characteristics: patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O6_06
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O6_06 HCC 2nd Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150625_MatterCancerRun13_O6_06 HCC 2nd Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O6_06 HCC 2nd Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
- 20150625_MatterCancerRun13_O6_06 HCC 2nd Biopsy patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208037
sample_title: 20150625_MatterCancerRun13_O6_06
source_name: HCC 2nd Biopsy
characteristics: patient.id: 19; tissue: Liver tissue; fibrosis stage: F4; age: 57; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F8_08 HCC 1st Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun6_F8_08 HCC 1st Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F8_08 HCC 1st Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun6_F8_08 HCC 1st Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208038
sample_title: 20150603_MatterCancerRun6_F8_08
source_name: HCC 1st Biopsy
characteristics: patient.id: 21; tissue: Liver tissue; fibrosis stage: F1; age: 39; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F9_09 HCC 2nd Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun6_F9_09 HCC 2nd Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F9_09 HCC 2nd Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
- 20150603_MatterCancerRun6_F9_09 HCC 2nd Biopsy patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208039
sample_title: 20150603_MatterCancerRun6_F9_09
source_name: HCC 2nd Biopsy
characteristics: patient.id: 21; tissue: Liver tissue; fibrosis stage: F4; age: 55; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G1_01 HCC 1st Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
- 20150618_MatterCancerRun7postBo_G1_01 HCC 1st Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G1_01 HCC 1st Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
- 20150618_MatterCancerRun7postBo_G1_01 HCC 1st Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208040
sample_title: 20150618_MatterCancerRun7postBo_G1_01
source_name: HCC 1st Biopsy
characteristics: patient.id: 22; tissue: Liver tissue; fibrosis stage: F3; age: 37; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G2_02 HCC 2nd Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
- 20150618_MatterCancerRun7postBo_G2_02 HCC 2nd Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G2_02 HCC 2nd Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
- 20150618_MatterCancerRun7postBo_G2_02 HCC 2nd Biopsy patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE;...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208041
sample_title: 20150618_MatterCancerRun7postBo_G2_02
source_name: HCC 2nd Biopsy
characteristics: patient.id: 22; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: FALSE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O7_07 HCC 1st Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150625_MatterCancerRun13_O7_07 HCC 1st Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O7_07 HCC 1st Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150625_MatterCancerRun13_O7_07 HCC 1st Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208042
sample_title: 20150625_MatterCancerRun13_O7_07
source_name: HCC 1st Biopsy
characteristics: patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O8_08 HCC 2nd Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150625_MatterCancerRun13_O8_08 HCC 2nd Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O8_08 HCC 2nd Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150625_MatterCancerRun13_O8_08 HCC 2nd Biopsy patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208043
sample_title: 20150625_MatterCancerRun13_O8_08
source_name: HCC 2nd Biopsy
characteristics: patient.id: 28; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G3_03
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G3_03 HCC 1st Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
- 20150618_MatterCancerRun7postBo_G3_03 HCC 1st Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G3_03 HCC 1st Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
- 20150618_MatterCancerRun7postBo_G3_03 HCC 1st Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208044
sample_title: 20150618_MatterCancerRun7postBo_G3_03
source_name: HCC 1st Biopsy
characteristics: patient.id: 29; tissue: Liver tissue; fibrosis stage: F2; age: 45; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G4_04 HCC 2nd Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
- 20150618_MatterCancerRun7postBo_G4_04 HCC 2nd Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G4_04 HCC 2nd Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
- 20150618_MatterCancerRun7postBo_G4_04 HCC 2nd Biopsy patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208045
sample_title: 20150618_MatterCancerRun7postBo_G4_04
source_name: HCC 2nd Biopsy
characteristics: patient.id: 29; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A7_07 HCC 1st Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150527_MatterCancerRun1_A7_07 HCC 1st Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A7_07 HCC 1st Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150527_MatterCancerRun1_A7_07 HCC 1st Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208046
sample_title: 20150527_MatterCancerRun1_A7_07
source_name: HCC 1st Biopsy
characteristics: patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A8_08 HCC 2nd Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150527_MatterCancerRun1_A8_08 HCC 2nd Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A8_08 HCC 2nd Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150527_MatterCancerRun1_A8_08 HCC 2nd Biopsy patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208047
sample_title: 20150527_MatterCancerRun1_A8_08
source_name: HCC 2nd Biopsy
characteristics: patient.id: 33; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A9_09 Tumor-free 1st Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE;...
- 20150527_MatterCancerRun1_A9_09 Tumor-free 1st Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A9_09 Tumor-free 1st Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE;...
- 20150527_MatterCancerRun1_A9_09 Tumor-free 1st Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208048
sample_title: 20150527_MatterCancerRun1_A9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A10_10 Tumor-free 2nd Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150527_MatterCancerRun1_A10_10 Tumor-free 2nd Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A10_10 Tumor-free 2nd Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150527_MatterCancerRun1_A10_10 Tumor-free 2nd Biopsy patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208049
sample_title: 20150527_MatterCancerRun1_A10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 34; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A11_11 Tumor-free 1st Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150527_MatterCancerRun1_A11_11 Tumor-free 1st Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A11_11 Tumor-free 1st Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150527_MatterCancerRun1_A11_11 Tumor-free 1st Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208050
sample_title: 20150527_MatterCancerRun1_A11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A12_12 Tumor-free 2nd Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150527_MatterCancerRun1_A12_12 Tumor-free 2nd Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A12_12 Tumor-free 2nd Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150527_MatterCancerRun1_A12_12 Tumor-free 2nd Biopsy patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208051
sample_title: 20150527_MatterCancerRun1_A12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 36; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun2_B7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B7_07 Tumor-free 1st Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B7_07 Tumor-free 1st Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B7_07 Tumor-free 1st Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B7_07 Tumor-free 1st Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208052
sample_title: 20150527_MatterCancerRun2_B7_07
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun2_B8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B8_08 Tumor-free 2nd Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B8_08 Tumor-free 2nd Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B8_08 Tumor-free 2nd Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B8_08 Tumor-free 2nd Biopsy patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208053
sample_title: 20150527_MatterCancerRun2_B8_08
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 37; tissue: Liver tissue; fibrosis stage: F4; age: 49; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun2_B11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B11_11 Tumor-free 1st Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B11_11 Tumor-free 1st Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B11_11 Tumor-free 1st Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B11_11 Tumor-free 1st Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208054
sample_title: 20150527_MatterCancerRun2_B11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun2_B12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B12_12 Tumor-free 2nd Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B12_12 Tumor-free 2nd Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun2_B12_12 Tumor-free 2nd Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150527_MatterCancerRun2_B12_12 Tumor-free 2nd Biopsy patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208055
sample_title: 20150527_MatterCancerRun2_B12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 39; tissue: Liver tissue; fibrosis stage: F4; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C7_07 Tumor-free 1st Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C7_07 Tumor-free 1st Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C7_07 Tumor-free 1st Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C7_07 Tumor-free 1st Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208056
sample_title: 20150528_MatterCancerRun3_C7_07
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 40; tissue: Liver tissue; fibrosis stage: F4; age: 42; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C8_08 Tumor-free 2nd Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C8_08 Tumor-free 2nd Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C8_08 Tumor-free 2nd Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C8_08 Tumor-free 2nd Biopsy patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208057
sample_title: 20150528_MatterCancerRun3_C8_08
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 40; tissue: Liver tissue; fibrosis stage: F2; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C9_09 Tumor-free 1st Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C9_09 Tumor-free 1st Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C9_09 Tumor-free 1st Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150528_MatterCancerRun3_C9_09 Tumor-free 1st Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208058
sample_title: 20150528_MatterCancerRun3_C9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 50; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C10_10 Tumor-free 2nd Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150528_MatterCancerRun3_C10_10 Tumor-free 2nd Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C10_10 Tumor-free 2nd Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150528_MatterCancerRun3_C10_10 Tumor-free 2nd Biopsy patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208059
sample_title: 20150528_MatterCancerRun3_C10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 41; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C11_11 Tumor-free 1st Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150528_MatterCancerRun3_C11_11 Tumor-free 1st Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C11_11 Tumor-free 1st Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150528_MatterCancerRun3_C11_11 Tumor-free 1st Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208060
sample_title: 20150528_MatterCancerRun3_C11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 51; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150528_MatterCancerRun3_C12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C12_12 Tumor-free 2nd Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150528_MatterCancerRun3_C12_12 Tumor-free 2nd Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150528_MatterCancerRun3_C12_12 Tumor-free 2nd Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150528_MatterCancerRun3_C12_12 Tumor-free 2nd Biopsy patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208061
sample_title: 20150528_MatterCancerRun3_C12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 43; tissue: Liver tissue; fibrosis stage: F4; age: 59; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F1_01 Tumor-free 1st Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F1_01 Tumor-free 1st Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F1_01 Tumor-free 1st Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F1_01 Tumor-free 1st Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208062
sample_title: 20150603_MatterCancerRun6_F1_01
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F2_02 Tumor-free 2nd Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F2_02 Tumor-free 2nd Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F2_02 Tumor-free 2nd Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F2_02 Tumor-free 2nd Biopsy patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208063
sample_title: 20150603_MatterCancerRun6_F2_02
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 45; tissue: Liver tissue; fibrosis stage: F4; age: 68; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F3_03
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F3_03 Tumor-free 1st Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F3_03 Tumor-free 1st Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F3_03 Tumor-free 1st Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F3_03 Tumor-free 1st Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208064
sample_title: 20150603_MatterCancerRun6_F3_03
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 46; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F4_04 Tumor-free 2nd Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F4_04 Tumor-free 2nd Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F4_04 Tumor-free 2nd Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150603_MatterCancerRun6_F4_04 Tumor-free 2nd Biopsy patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208065
sample_title: 20150603_MatterCancerRun6_F4_04
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 46; tissue: Liver tissue; fibrosis stage: F2; age: 49; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F11_11 Tumor-free 1st Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150603_MatterCancerRun6_F11_11 Tumor-free 1st Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F11_11 Tumor-free 1st Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150603_MatterCancerRun6_F11_11 Tumor-free 1st Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208066
sample_title: 20150603_MatterCancerRun6_F11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150603_MatterCancerRun6_F12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F12_12 Tumor-free 2nd Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150603_MatterCancerRun6_F12_12 Tumor-free 2nd Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150603_MatterCancerRun6_F12_12 Tumor-free 2nd Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150603_MatterCancerRun6_F12_12 Tumor-free 2nd Biopsy patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208067
sample_title: 20150603_MatterCancerRun6_F12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 48; tissue: Liver tissue; fibrosis stage: F4; age: 52; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G7_07 Tumor-free 1st Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: ...
- 20150618_MatterCancerRun7postBo_G7_07 Tumor-free 1st Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G7_07 Tumor-free 1st Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: ...
- 20150618_MatterCancerRun7postBo_G7_07 Tumor-free 1st Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208068
sample_title: 20150618_MatterCancerRun7postBo_G7_07
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 49; tissue: Liver tissue; fibrosis stage: F4; age: 43; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun7postBo_G8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G8_08 Tumor-free 2nd Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: ...
- 20150618_MatterCancerRun7postBo_G8_08 Tumor-free 2nd Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun7postBo_G8_08 Tumor-free 2nd Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: ...
- 20150618_MatterCancerRun7postBo_G8_08 Tumor-free 2nd Biopsy patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: ...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208069
sample_title: 20150618_MatterCancerRun7postBo_G8_08
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 49; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun8postBo_H9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun8postBo_H9_09 Tumor-free 1st Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV:...
- 20150618_MatterCancerRun8postBo_H9_09 Tumor-free 1st Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV:...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun8postBo_H9_09 Tumor-free 1st Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV:...
- 20150618_MatterCancerRun8postBo_H9_09 Tumor-free 1st Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV:...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208070
sample_title: 20150618_MatterCancerRun8postBo_H9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 53; tissue: Liver tissue; fibrosis stage: F4; age: 39; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150618_MatterCancerRun8postBo_H10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun8postBo_H10_10 Tumor-free 2nd Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV...
- 20150618_MatterCancerRun8postBo_H10_10 Tumor-free 2nd Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150618_MatterCancerRun8postBo_H10_10 Tumor-free 2nd Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV...
- 20150618_MatterCancerRun8postBo_H10_10 Tumor-free 2nd Biopsy patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208071
sample_title: 20150618_MatterCancerRun8postBo_H10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 53; tissue: Liver tissue; fibrosis stage: F1; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I9_09 Tumor-free 1st Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150623_MatterCancerRun9_I9_09 Tumor-free 1st Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I9_09 Tumor-free 1st Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
- 20150623_MatterCancerRun9_I9_09 Tumor-free 1st Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; ...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208072
sample_title: 20150623_MatterCancerRun9_I9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 56; tissue: Liver tissue; fibrosis stage: F4; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I10_10 Tumor-free 2nd Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I10_10 Tumor-free 2nd Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I10_10 Tumor-free 2nd Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I10_10 Tumor-free 2nd Biopsy patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208073
sample_title: 20150623_MatterCancerRun9_I10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 56; tissue: Liver tissue; fibrosis stage: F2; age: 56; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I11_11 Tumor-free 1st Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I11_11 Tumor-free 1st Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I11_11 Tumor-free 1st Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I11_11 Tumor-free 1st Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208074
sample_title: 20150623_MatterCancerRun9_I11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 57; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I12_12 Tumor-free 2nd Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I12_12 Tumor-free 2nd Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I12_12 Tumor-free 2nd Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun9_I12_12 Tumor-free 2nd Biopsy patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208075
sample_title: 20150623_MatterCancerRun9_I12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 57; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun10_L9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L9_09 Tumor-free 1st Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun10_L9_09 Tumor-free 1st Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L9_09 Tumor-free 1st Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150623_MatterCancerRun10_L9_09 Tumor-free 1st Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208076
sample_title: 20150623_MatterCancerRun10_L9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 59; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun10_L10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L10_10 Tumor-free 2nd Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150623_MatterCancerRun10_L10_10 Tumor-free 2nd Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L10_10 Tumor-free 2nd Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150623_MatterCancerRun10_L10_10 Tumor-free 2nd Biopsy patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208077
sample_title: 20150623_MatterCancerRun10_L10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 59; tissue: Liver tissue; fibrosis stage: F2; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun10_L11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L11_11 Tumor-free 1st Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150623_MatterCancerRun10_L11_11 Tumor-free 1st Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L11_11 Tumor-free 1st Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150623_MatterCancerRun10_L11_11 Tumor-free 1st Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208078
sample_title: 20150623_MatterCancerRun10_L11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 60; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun10_L12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L12_12 Tumor-free 2nd Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150623_MatterCancerRun10_L12_12 Tumor-free 2nd Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun10_L12_12 Tumor-free 2nd Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150623_MatterCancerRun10_L12_12 Tumor-free 2nd Biopsy patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208079
sample_title: 20150623_MatterCancerRun10_L12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 60; tissue: Liver tissue; fibrosis stage: F1; age: 72; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M7_07 HCC 1st Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M7_07 HCC 1st Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M7_07 HCC 1st Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M7_07 HCC 1st Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208080
sample_title: 20150624_MatterCancerRun11_M7_07
source_name: HCC 1st Biopsy
characteristics: patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M8_08 HCC 2nd Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M8_08 HCC 2nd Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M8_08 HCC 2nd Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M8_08 HCC 2nd Biopsy patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208081
sample_title: 20150624_MatterCancerRun11_M8_08
source_name: HCC 2nd Biopsy
characteristics: patient.id: 61; tissue: Liver tissue; fibrosis stage: F4; age: 65; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M9_09 Tumor-free 1st Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150624_MatterCancerRun11_M9_09 Tumor-free 1st Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M9_09 Tumor-free 1st Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150624_MatterCancerRun11_M9_09 Tumor-free 1st Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208082
sample_title: 20150624_MatterCancerRun11_M9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 62; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M10_10 Tumor-free 2nd Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M10_10 Tumor-free 2nd Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M10_10 Tumor-free 2nd Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M10_10 Tumor-free 2nd Biopsy patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208083
sample_title: 20150624_MatterCancerRun11_M10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 62; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M11_11 Tumor-free 1st Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M11_11 Tumor-free 1st Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M11_11 Tumor-free 1st Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M11_11 Tumor-free 1st Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208084
sample_title: 20150624_MatterCancerRun11_M11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 63; tissue: Liver tissue; fibrosis stage: F4; age: 47; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M12_12 Tumor-free 2nd Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M12_12 Tumor-free 2nd Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M12_12 Tumor-free 2nd Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun11_M12_12 Tumor-free 2nd Biopsy patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208085
sample_title: 20150624_MatterCancerRun11_M12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 63; tissue: Liver tissue; fibrosis stage: F1; age: 60; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N1_01 Tumor-free 1st Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N1_01 Tumor-free 1st Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N1_01 Tumor-free 1st Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N1_01 Tumor-free 1st Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208086
sample_title: 20150624_MatterCancerRun12_N1_01
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 64; tissue: Liver tissue; fibrosis stage: F4; age: 38; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N2_02 Tumor-free 2nd Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N2_02 Tumor-free 2nd Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N2_02 Tumor-free 2nd Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N2_02 Tumor-free 2nd Biopsy patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208087
sample_title: 20150624_MatterCancerRun12_N2_02
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 64; tissue: Liver tissue; fibrosis stage: F2; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N5_05 Tumor-free 1st Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N5_05 Tumor-free 1st Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N5_05 Tumor-free 1st Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N5_05 Tumor-free 1st Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208088
sample_title: 20150624_MatterCancerRun12_N5_05
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 56; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N6_06
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N6_06 Tumor-free 2nd Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N6_06 Tumor-free 2nd Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N6_06 Tumor-free 2nd Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N6_06 Tumor-free 2nd Biopsy patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208089
sample_title: 20150624_MatterCancerRun12_N6_06
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 66; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N7_07 Tumor-free 1st Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150624_MatterCancerRun12_N7_07 Tumor-free 1st Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N7_07 Tumor-free 1st Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150624_MatterCancerRun12_N7_07 Tumor-free 1st Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208090
sample_title: 20150624_MatterCancerRun12_N7_07
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 67; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N8_08 Tumor-free 2nd Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150624_MatterCancerRun12_N8_08 Tumor-free 2nd Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N8_08 Tumor-free 2nd Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
- 20150624_MatterCancerRun12_N8_08 Tumor-free 2nd Biopsy patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208091
sample_title: 20150624_MatterCancerRun12_N8_08
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 67; tissue: Liver tissue; fibrosis stage: F2; age: 70; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N9_09 Tumor-free 1st Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150624_MatterCancerRun12_N9_09 Tumor-free 1st Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N9_09 Tumor-free 1st Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
- 20150624_MatterCancerRun12_N9_09 Tumor-free 1st Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE;...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208092
sample_title: 20150624_MatterCancerRun12_N9_09
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 68; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N10_10 Tumor-free 2nd Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N10_10 Tumor-free 2nd Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N10_10 Tumor-free 2nd Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
- 20150624_MatterCancerRun12_N10_10 Tumor-free 2nd Biopsy patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208093
sample_title: 20150624_MatterCancerRun12_N10_10
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 68; tissue: Liver tissue; fibrosis stage: F3; age: 48; liver disease: Alcohol: TRUE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I1_01 HCC 1st Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150623_MatterCancerRun9_I1_01 HCC 1st Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I1_01 HCC 1st Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150623_MatterCancerRun9_I1_01 HCC 1st Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208094
sample_title: 20150623_MatterCancerRun9_I1_01
source_name: HCC 1st Biopsy
characteristics: patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 61; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150623_MatterCancerRun9_I2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I2_02 HCC 2nd Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150623_MatterCancerRun9_I2_02 HCC 2nd Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150623_MatterCancerRun9_I2_02 HCC 2nd Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
- 20150623_MatterCancerRun9_I2_02 HCC 2nd Biopsy patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver ...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208095
sample_title: 20150623_MatterCancerRun9_I2_02
source_name: HCC 2nd Biopsy
characteristics: patient.id: 81; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O3_03
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O3_03 Tumor-free 1st Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150625_MatterCancerRun13_O3_03 Tumor-free 1st Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O3_03 Tumor-free 1st Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150625_MatterCancerRun13_O3_03 Tumor-free 1st Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208096
sample_title: 20150625_MatterCancerRun13_O3_03
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 82; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150625_MatterCancerRun13_O4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O4_04 Tumor-free 2nd Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150625_MatterCancerRun13_O4_04 Tumor-free 2nd Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun13_O4_04 Tumor-free 2nd Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
- 20150625_MatterCancerRun13_O4_04 Tumor-free 2nd Biopsy patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208097
sample_title: 20150625_MatterCancerRun13_O4_04
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 82; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150625_MatterCancerRun114_P9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P9_09 HCC 1st Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; live...
- 20150625_MatterCancerRun114_P9_09 HCC 1st Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; live...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P9_09 HCC 1st Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; live...
- 20150625_MatterCancerRun114_P9_09 HCC 1st Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; live...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208098
sample_title: 20150625_MatterCancerRun114_P9_09
source_name: HCC 1st Biopsy
characteristics: patient.id: 86; tissue: Liver tissue; fibrosis stage: F3; age: 58; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun114_P10_10
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P10_10 HCC 2nd Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P10_10 HCC 2nd Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P10_10 HCC 2nd Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P10_10 HCC 2nd Biopsy patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208099
sample_title: 20150625_MatterCancerRun114_P10_10
source_name: HCC 2nd Biopsy
characteristics: patient.id: 86; tissue: Liver tissue; fibrosis stage: F4; age: 71; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun114_P11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P11_11 HCC 1st Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P11_11 HCC 1st Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P11_11 HCC 1st Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P11_11 HCC 1st Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208100
sample_title: 20150625_MatterCancerRun114_P11_11
source_name: HCC 1st Biopsy
characteristics: patient.id: 87; tissue: Liver tissue; fibrosis stage: F3; age: 52; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150625_MatterCancerRun114_P12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P12_12 HCC 2nd Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P12_12 HCC 2nd Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150625_MatterCancerRun114_P12_12 HCC 2nd Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
- 20150625_MatterCancerRun114_P12_12 HCC 2nd Biopsy patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liv...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208101
sample_title: 20150625_MatterCancerRun114_P12_12
source_name: HCC 2nd Biopsy
characteristics: patient.id: 87; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20160330_MatterCancerRun15_Q7_07
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun15_Q7_07 HCC 1st Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun15_Q7_07 HCC 1st Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun15_Q7_07 HCC 1st Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun15_Q7_07 HCC 1st Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208102
sample_title: 20160330_MatterCancerRun15_Q7_07
source_name: HCC 1st Biopsy
characteristics: patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 44; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20160330_MatterCancerRun15_Q8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun15_Q8_08 HCC 2nd Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun15_Q8_08 HCC 2nd Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun15_Q8_08 HCC 2nd Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun15_Q8_08 HCC 2nd Biopsy patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208103
sample_title: 20160330_MatterCancerRun15_Q8_08
source_name: HCC 2nd Biopsy
characteristics: patient.id: 91; tissue: Liver tissue; fibrosis stage: F4; age: 54; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20160330_MatterCancerRun16_R3_03
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R3_03 HCC 1st Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun16_R3_03 HCC 1st Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R3_03 HCC 1st Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun16_R3_03 HCC 1st Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208104
sample_title: 20160330_MatterCancerRun16_R3_03
source_name: HCC 1st Biopsy
characteristics: patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 58; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20160330_MatterCancerRun16_R4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R4_04 HCC 2nd Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun16_R4_04 HCC 2nd Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R4_04 HCC 2nd Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20160330_MatterCancerRun16_R4_04 HCC 2nd Biopsy patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208105
sample_title: 20160330_MatterCancerRun16_R4_04
source_name: HCC 2nd Biopsy
characteristics: patient.id: 95; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20160330_MatterCancerRun16_R8_08
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R8_08 HCC 1st Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
- 20160330_MatterCancerRun16_R8_08 HCC 1st Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R8_08 HCC 1st Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
- 20160330_MatterCancerRun16_R8_08 HCC 1st Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208106
sample_title: 20160330_MatterCancerRun16_R8_08
source_name: HCC 1st Biopsy
characteristics: patient.id: 97; tissue: Liver tissue; fibrosis stage: F3; age: 41; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20160330_MatterCancerRun16_R9_09
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R9_09 HCC 2nd Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
- 20160330_MatterCancerRun16_R9_09 HCC 2nd Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20160330_MatterCancerRun16_R9_09 HCC 2nd Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
- 20160330_MatterCancerRun16_R9_09 HCC 2nd Biopsy patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208107
sample_title: 20160330_MatterCancerRun16_R9_09
source_name: HCC 2nd Biopsy
characteristics: patient.id: 97; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: FALSE; liver disease: HCV: TRUE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A4_04
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A4_04 HCC 1st Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
- 20150527_MatterCancerRun1_A4_04 HCC 1st Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A4_04 HCC 1st Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
- 20150527_MatterCancerRun1_A4_04 HCC 1st Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208108
sample_title: 20150527_MatterCancerRun1_A4_04
source_name: HCC 1st Biopsy
characteristics: patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 45; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150527_MatterCancerRun1_A5_05
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A5_05 HCC 2nd Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
- 20150527_MatterCancerRun1_A5_05 HCC 2nd Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150527_MatterCancerRun1_A5_05 HCC 2nd Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
- 20150527_MatterCancerRun1_A5_05 HCC 2nd Biopsy patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver d...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208109
sample_title: 20150527_MatterCancerRun1_A5_05
source_name: HCC 2nd Biopsy
characteristics: patient.id: 2; tissue: Liver tissue; fibrosis stage: F4; age: 53; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M1_01
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M1_01 HCC 1st Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M1_01 HCC 1st Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M1_01 HCC 1st Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M1_01 HCC 1st Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 1st Biopsy
- Characteristics
- patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208110
sample_title: 20150624_MatterCancerRun11_M1_01
source_name: HCC 1st Biopsy
characteristics: patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150624_MatterCancerRun11_M2_02
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M2_02 HCC 2nd Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M2_02 HCC 2nd Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun11_M2_02 HCC 2nd Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
- 20150624_MatterCancerRun11_M2_02 HCC 2nd Biopsy patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver...
Source metadata
- Source name
- HCC 2nd Biopsy
- Characteristics
- patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208111
sample_title: 20150624_MatterCancerRun11_M2_02
source_name: HCC 2nd Biopsy
characteristics: patient.id: 72; tissue: Liver tissue; fibrosis stage: F4; age: 66; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: TRUE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N11_11
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N11_11 Tumor-free 1st Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150624_MatterCancerRun12_N11_11 Tumor-free 1st Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N11_11 Tumor-free 1st Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150624_MatterCancerRun12_N11_11 Tumor-free 1st Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
Source metadata
- Source name
- Tumor-free 1st Biopsy
- Characteristics
- patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208112
sample_title: 20150624_MatterCancerRun12_N11_11
source_name: Tumor-free 1st Biopsy
characteristics: patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 62; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
20150624_MatterCancerRun12_N12_12
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Explicit sample label case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N12_12 Tumor-free 2nd Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150624_MatterCancerRun12_N12_12 Tumor-free 2nd Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20150624_MatterCancerRun12_N12_12 Tumor-free 2nd Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
- 20150624_MatterCancerRun12_N12_12 Tumor-free 2nd Biopsy patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALS...
Source metadata
- Source name
- Tumor-free 2nd Biopsy
- Characteristics
- patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM3208113
sample_title: 20150624_MatterCancerRun12_N12_12
source_name: Tumor-free 2nd Biopsy
characteristics: patient.id: 79; tissue: Liver tissue; fibrosis stage: F4; age: 67; liver disease: Alcohol: TRUE; liver disease: HCV: FALSE; liver disease: HBV: FALSE; liver disease: PBC: FALSE