GSE119600

Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
370 samples
Specimen
Biofluid
Reported/interpreted study design
Disease/model vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
Ostrowski J, Goryca K, Lazowska I, Rogowska A, Paziewska A, Dabrowska M, Ambrozkiewicz F, Karczmarski J, Balabas A, Kluska A, Piatkowska M, Zeber-Lubecka N, Kulecka M, Habior A, Mikula M
Contact name
Krzysztof Goryca
Submission date
2018-09-06
Last update
2019-06-27
Organization
Uniwersytet Warszawski
Department
CeNT
Public date
2019-05-01
Experiment types
Expression profiling by array
Platforms
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Series type
Series
SubSeries
Not available
BioProject
PRJNA489696

Summary

Primary biliary cholangitis (PBC), primary sclerosing cholangitis (PSC), and inflammatory bowel diseases (IBDs), including Crohn’s disease (CD) and ulcerative colitis (UC), are heterogeneous chronic autoimmune diseases that may share underlying pathogenic mechanisms. Herein, we compared simultaneously analyzed blood transcriptomes from patients with PBC, PSC, and IBD.

Overall design

Microarray-based measurements were conducted using RNA isolated from whole blood samples from 90, 45, 95 and 93 patients with PBC, PSC, CD, and UC, respectively, and 47 healthy controls.

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
370 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Planned source for curated expression experiment links.

 No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

13 linked publications 13 DOIs

Primary publication

  1. Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases. Scientific reports, 2019

Related publications

  1. Identification of Crosstalk Genes Between Primary Sjögren's Syndrome and Primary Biliary Cirrhosis by Transcriptome Analysis. Digestive diseases and sciences, 2025
  2. Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease. Computers in biology and medicine, 2025
  3. Whole Exome Sequencing Identifies Two Novel Mutations in a Patient with UC Associated with PSC and SSA. Canadian journal of gastroenterology & hepatology, 2021
  4. Pyroptosis Plays a Key Role Through Macrophages in Primary Biliary Cholangitis of Mice. BioMed research international, 2026
  5. Integrative bioinformatics analysis and experimental validation of key biomarkers for risk stratification in primary biliary cholangitis. Arthritis research & therapy, 2023
  6. Bioinformatic analysis identified novel candidate genes with the potentials for diagnostic blood testing of primary biliary cholangitis. PloS one, 2023
  7. Integrating Machine Learning and Multiomics Analyses to Identify Immune-Related Biomarkers and Mechanisms in Primary Biliary Cholangitis. Clinical and translational gastroenterology, 2025
  8. Leveraging pQTL-based Mendelian randomization to identify new treatment prospects for primary biliary cholangitis and primary sclerosing cholangitis. Aging, 2024
  9. Aimed at Subtype Discrimination but Yielding a Shared Marker: Integrative Analysis of Blood Transcriptomes Reveals Upregulated TLR5 as a Potential Biomarker for IBD. Clinical and experimental gastroenterology, 2026
  10. NCF2 as a Novel Diagnostic Biomarker in Ulcerative Colitis: Linking Macrophage Infiltration to Immune Dysregulation via Multi-Omics Analysis. Journal of inflammation research, 2025
  11. Exploration of the Common Gene Characteristics and Molecular Mechanism of Parkinson's Disease and Crohn's Disease from Transcriptome Data. Brain sciences, 2022
  12. [Bioinformatics analysis of primary biliary cholangitis key genes and molecular mechanisms]. Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology, 2023
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis
85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

  • 135 samples are still unassigned.

Next Steps

  • Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

0 review-needed samples and 135 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples are unassigned and need manual grouping decisions.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Crohn's disease 188 samples
  • Likely control group Control 47 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 13 publications; 13 DOIs available: PMID 31076612, PMID 34545326, PMID 35741659, PMID 37784152, PMID 37844121.
  • Publication context: Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases.. Scientific reports, 2019. PMID 31076612. DOI 10.1038/s41598-019-43699-1.
  • Publication context: Whole Exome Sequencing Identifies Two Novel Mutations in a Patient with UC Associated with PSC and SSA.. Canadian journal of gastroenterology & hepatology, 2021. PMID 34545326. DOI 10.1155/2021/9936932.
  • Publication context: Exploration of the Common Gene Characteristics and Molecular Mechanism of Parkinson's Disease and Crohn's Disease from Transcriptome Data.. Brain sciences, 2022. PMID 35741659. DOI 10.3390/brainsci12060774.
  • Publication context: 10 additional linked PubMed publications are available.

Cautions

  • Downgraded for tissue search because it is a biofluid cohort.
  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
  • Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 1305 fields

Sample Group Preview

showing 147 of 370 preview rows Show Hide
Study totals: Case 188 | Control 47 | Unassigned 135 | Excluded 0 | Ambiguous 0 showing 147 of 370 preview rows
Group Role Accession Title Source / characteristics Reason
Crohn's disease Case GSM3378185 2/5_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378187 2/40_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378188 2/48_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378189 2/69_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378190 2/94_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378191 2/96_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378192 2/112_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378193 13//1_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378194 13//5_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378195 13//8_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378196 13/25_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378197 13/26_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378198 13/31_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378199 13/34_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378200 13/40_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378201 13/41_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378202 13/52_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378203 13/57_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378204 13/64_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378205 13/67_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378206 13/69_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378207 13/72_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378208 13/74_CA Crohn’s disease, adult Condition: Crohn's disease; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378209 2/9_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378210 2/33_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378211 2/97_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378212 2/106_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378213 2/108_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378214 2/133_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378215 2/137_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378216 2/2_WY Ulcerative colitis, child Condition: Ulcerative colitis; Age group: Child; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378217 13//4_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378218 13//6_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378219 13//9_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378220 13/13_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378221 13/14_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378222 13/27_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378223 13/28_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378224 13/35_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378225 13/36_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378226 13/38_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378227 13/39_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378228 13/50_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378229 13/65_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378230 13/66_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378231 13/103_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Ulcerative colitis Case GSM3378232 13/118_WA Ulcerative colitis, adult Condition: Ulcerative colitis; Age group: Adult; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378278 2/116_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378279 2/29_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
Crohn's disease Case GSM3378280 2/31_CY Crohn’s disease, child Condition: Crohn's disease; Age group: Child; Tissue: Whole blood Case marker detected.
138 additional case samples are hidden from this preview.
Control Control GSM3378154 10/12_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378156 8/32_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378158 11/11_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378160 11/22_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378162 8/14_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378164 11/29_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378169 8/42_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378171 11/36_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378173 8//11_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378175 8//8_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378177 11//15_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378179 8//19_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378263 11/33_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378264 10//21_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378265 8//15_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378266 8//13_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378267 11/38_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378270 10/36_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378271 11/37_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378272 11//26_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378273 11//27_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378274 11//16_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378275 11//30_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378354 8/36_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378355 8//28_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378356 8//9_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378357 10/48_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378358 11//2_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378359 11/32_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378362 11/40_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378363 11//14_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378364 8//21_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378365 11//28_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378366 10/38_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378367 11/34_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378445 10/51_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378446 8//17_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378447 11//4_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378448 11//24_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378449 10//17_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378450 8/44_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378453 8//22_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378454 11//31_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378455 10/57_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378456 8/33_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378457 8/43_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Control Control GSM3378458 8//6_K Control, adult Condition: Control; Age group: Adult; Tissue: Whole blood Sample-local control marker detected.
Unassigned Unassigned GSM3378086 12/238_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378093 12/295_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378095 12/216_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378097 12/147_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378099 12/322_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378101 12/75_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378103 12/33_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378105 12/297_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378107 12/369_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378109 12/55_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378111 12//28_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378112 12/299_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378115 12/373_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378118 12/374_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378120 12/52_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378121 12/303_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378124 12/150_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378126 12/251 _PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378128 12/355_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378130 12/356_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378132 12/154_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378134 12/347_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378136 12//22_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378138 12/293_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378140 12/354_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378141 12/339_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378143 12/205_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378146 12/281_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378148 12/92_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378150 12/234_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378152 12/167_PSC Primary sclerosing cholangitis, adult Condition: Primary sclerosing cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378166 12/228_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378167 12/298_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378181 12/178_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378183 12/120_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378233 5/36_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378234 5//9_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378235 5/32_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378236 5//24_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378237 5/38_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378238 5/41_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378239 5/37_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378240 5//23_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378241 2//26_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378242 2//9_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378243 2/47_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378244 2/60_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378245 2/45_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378246 2//24_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
Unassigned Unassigned GSM3378247 2//4_PBC Primary biliary cholangitis, adult Condition: Primary biliary cholangitis; Age group: Adult; Tissue: Whole blood No explicit case or control marker detected.
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External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.