GSE126124

Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease.

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

57 case / 21 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Summary

Presenting features of inflammatory bowel disease (IBD) are non-specific. We hypothesized that mRNA profiles could (1) identify genes and pathways involved in disease pathogenesis; (2) identify a molecular signature that differentiates IBD from other conditions; (3) provide insight into systemic and colon-specific dysregulation through study of the concordance of the gene expression. Children (8-18 years) were prospectively recruited at the time of diagnostic colonoscopy for possible IBD. We used transcriptome-wide mRNA profiling to study gene expression in colon biopsies and paired whole blood samples. Using blood mRNA measurements, we fit a regression model for disease state prediction that was validated in an independent test set of adult subjects (GSE3365). Results: Ninety-eight children were recruited [39 Crohn’s disease, 18 ulcerative colitis, 2 IBDU, 39 non-IBD]. There were 1,118 significantly differentially (IBD vs non-IBD) expressed genes in colon tissue, and 880 in blood. The direction of relative change in expression was concordant for 106/112 genes differentially expressed in both tissue types. The regression model from the blood mRNA measurements distinguished IBD vs non-IBD disease status in the independent test set with 80% accuracy using only 6 genes. The overlap of 5 immune and metabolic pathways in the two tissue types was significant (p<0.001). Conclusions: Blood and colon tissue from patients with IBD share a common transcriptional profile dominated by immune and metabolic pathways. Our results suggest that peripheral blood expression levels of as few as 6 genes (IL7R, UBB, TXNIP, S100A8, ALAS2, and SLC2A3) may distinguish patients with IBD from non-IBD. Ninety-eight children were recruited [39 Crohn’s disease, 18 ulcerative colitis, 2 IBDU, 39 non-IBD]. There were 1,118 significantly differentially (IBD vs non-IBD) expressed genes in colon tissue, and 880 in blood. The direction of relative change in expression was concordant for 106/112 genes differentially expressed in both tissue types. The regression model from the blood mRNA measurements distinguished IBD vs non-IBD disease status in the independent test set with 80% accuracy using only 6 genes. The overlap of 5 immune and metabolic pathways in the two tissue types was significant (p<0.001). Conclusions: Blood and colon tissue from patients with IBD share a common transcriptional profile dominated by immune and metabolic pathways. Our results suggest that peripheral blood expression levels of as few as 6 genes (IL7R, UBB, TXNIP, S100A8, ALAS2, and SLC2A3) may distinguish patients with IBD from non-IBD.

Overall design

Children (8-18 years) were prospectively recruited at the time of diagnostic colonoscopy for possible IBD. We used transcriptome-wide mRNA profiling to study gene expression in colon biopsies and paired whole blood samples. Using blood mRNA measurements, we fit a regression model for disease state prediction that was validated in an independent test set of adult subjects (GSE3365).

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
176 GSM samples
Primary source
recount3

Planned trusted source for processed count availability.

No match found
Expression Atlas

Planned source for curated expression experiment links.

No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

12 linked publications 11 DOIs

Primary publication

  1. Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease. PloS one, 2019

Related publications

  1. Deep-frying oil induces cytotoxicity, inflammation and apoptosis on intestinal epithelial cells. Journal of the science of food and agriculture, 2022
  2. Combined Bulk and Single-Cell Transcriptomic Analysis to Reveal the Potential Influences of Intestinal Inflammatory Disease on Multiple Sclerosis. Inflammation, 2025
  3. Integrated multiple microarray studies by robust rank aggregation to identify immune-associated biomarkers in Crohn's disease based on three machine learning methods. Scientific reports, 2023
  4. Cross talk between bacterial and human gene networks enriched using ncRNAs in IBD disease. Scientific reports, 2023
  5. Identification of ferroptosis-related genes in pediatric Crohn's disease using bioinformatics approaches. Scientific reports, 2025
  6. Evidence for the butyrate metabolism as key pathway improving ulcerative colitis in both pediatric and adult patients. Bioengineered, 2021
  7. Identification of FCN1 as a novel macrophage infiltration-associated biomarker for diagnosis of pediatric inflammatory bowel diseases. Journal of translational medicine, 2023
  8. Aimed at Subtype Discrimination but Yielding a Shared Marker: Integrative Analysis of Blood Transcriptomes Reveals Upregulated TLR5 as a Potential Biomarker for IBD. Clinical and experimental gastroenterology, 2026
  9. Comprehensive analysis to identify the influences of SARS-CoV-2 infections to inflammatory bowel disease. Frontiers in immunology, 2023
  10. Potential shared pathogenic mechanisms between endometriosis and inflammatory bowel disease indicate a strong initial effect of immune factors. Frontiers in immunology, 2024
  11. Introducing GATA3 as a prominent player in Crohn's disease. Gastroenterology and hepatology from bed to bench, 2020
Available

Metadata Quality Components

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Mixed specimen/source groups must be separated before analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Crohn's disease 116 samples
  • Likely control group Control 60 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because specimen/source classes are mixed. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Mixed specimen/source. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 12 publications; 11 DOIs available: PMID 31618209, PMID 33585004, PMID 34592880, PMID 34786719, PMID 36792688.
  • Publication context: Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease.. PloS one, 2019. PMID 31618209. DOI 10.1371/journal.pone.0222952.
  • Publication context: Introducing GATA3 as a prominent player in Crohn's disease.. Gastroenterology and hepatology from bed to bench, 2020. PMID 33585004.
  • Publication context: Evidence for the butyrate metabolism as key pathway improving ulcerative colitis in both pediatric and adult patients.. Bioengineered, 2021. PMID 34592880. DOI 10.1080/21655979.2021.1985815.
  • Publication context: 9 additional linked PubMed publications are available.

Cautions

  • Downgraded for tissue search because specimen/source classes are mixed.
  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Mixed specimen/source dataset downgraded until tissue samples are clearly separated.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 729 fields

Sample Group Preview

showing 100 of 176 preview rows
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Study totals: Case 116 | Control 60 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 100 of 176 preview rows
Group Role Accession Title Source / characteristics Reason
Crohn's disease Case GSM3591888 Blood-crohn's disease - 10.7 year old female Blood Gender: Female; Age: 10.7; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591889 Blood-crohn's disease - 10.5 year old male Blood Gender: Male; Age: 10.5; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591890 Blood-crohn's disease - 9.5 year old male Blood Gender: Male; Age: 9.5; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591891 Blood-ulcerative colitis - 12.8 year old female Blood Gender: Female; Age: 12.8; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591896 Blood-crohn's disease- 13.1 year old male Blood Gender: Male; Age: 13.1; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591897 Blood-crohn's disease- 11.5 year old female Blood Gender: Female; Age: 11.5; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591898 Blood-crohn's disease- 15.9 year old female Blood Gender: Female; Age: 15.9; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591899 Blood-crohn's disease- 11.8 year old female Blood Gender: Female; Age: 11.8; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591902 Blood-crohn's disease- 10.9 year old female Blood Gender: Female; Age: 10.9; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591904 Blood-crohn's disease- 13.6 year old male Blood Gender: Male; Age: 13.6; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591906 Blood-ulcerative colitis- 17.3 year old female Blood Gender: Female; Age: 17.3; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591908 Blood-crohn's disease- 14.4 year old male Blood Gender: Male; Age: 14.4; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591909 Blood-crohn's disease- 11.1 year old male Blood Gender: Male; Age: 11.1; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591913 Blood-crohn's disease- 15.8 year old male Blood Gender: Male; Age: 15.8; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591914 Blood-ulcerative colitis- 15.8 year old male Blood Gender: Male; Age: 15.8; Disease type: UC - proctitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591915 Blood-crohn's disease- 8.3 year old female Blood Gender: Female; Age: 8.3; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591916 Blood-crohn's disease- 13.8 year old male Blood Gender: Male; Age: 13.8; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591923 Blood-ulcerative colitis- 14.8 year old male Blood Gender: Male; Age: 14.8; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591924 Blood-crohn's disease- 8.6 year old male Blood Gender: Male; Age: 8.6; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591928 Blood-crohn's disease- 12.8 year old male Blood Gender: Male; Age: 12.8; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591930 Blood-crohn's disease- 16.4 year old female Blood Gender: Female; Age: 16.4; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591932 Blood-crohn's disease- 17.1 year old male Blood Gender: Male; Age: 17.1; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591934 Blood-crohn's disease- 9.2 year old male Blood Gender: Male; Age: 9.2; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591936 Blood-ulcerative colitis- 16.3 year old male Blood Gender: Male; Age: 16.3; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591939 Blood-crohn's disease- 18.7 year old male Blood Gender: Male; Age: 18.7; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591940 Blood-ulcerative colitis- 8.6 year old female Blood Gender: Female; Age: 8.6; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591942 Blood-crohn's disease- 14.6 year old male Blood Gender: Male; Age: 14.6; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591944 Blood-crohn's disease- 13.6 yr old male Blood Gender: Male; Age: 13.6; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591947 Blood-crohn's disease- 17 year old male Blood Gender: Male; Age: 17; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591948 Blood-ulcerative colitis- 12.7 year old female Blood Gender: Female; Age: 12.7; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591950 Blood-ulcerative colitis- 16.1 year old female Blood Gender: Female; Age: 16.1; Disease type: UC - L colitis; Tissue: Peripheral whole blood Case marker detected.
Inflammatory bowel disease Case GSM3591951 Blood- IBD- 14.2 year old male Blood Gender: Male; Age: 14.2; Disease type: IBD w/ oral; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591953 Blood-crohn's disease- 8.4 year old male Blood Gender: Male; Age: 8.4; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591954 Blood-ulcerative colitis- 14.4 year old male Blood Gender: Male; Age: 14.4; Disease type: UC - L colitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591955 Blood-crohn's disease- 16.4 year old female2 Blood Gender: Female; Age: 16.4; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591956 Blood-ulcerative colitis- 8.3 year old female Blood Gender: Female; Age: 8.3; Disease type: UC - L colitis; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591959 Blood-ulcerative colitis- 17 year old male Blood Gender: Male; Age: 17; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591960 Blood-crohn's disease-11.3 year old male Blood Gender: Male; Age: 11.3; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Inflammatory bowel disease Case GSM3591961 Blood- IBD- 14 year old male Blood Gender: Male; Age: 14; Disease type: IBDU; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591962 Blood-crohn's disease- 14.2 year old female Blood Gender: Female; Age: 14.2; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591963 Blood-crohn's disease- 10.4 year old male Blood Gender: Male; Age: 10.4; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591964 Blood-crohn's disease- 12.8 year old female Blood Gender: Female; Age: 12.8; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591965 Blood-crohn's disease- 16 year old male Blood Gender: Male; Age: 16; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591966 Blood-crohn's disease- 14.7 year old male Blood Gender: Male; Age: 14.7; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591967 Blood-crohn's disease- 16.3 year old male Blood Gender: Male; Age: 16.3; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591968 Blood-crohn's disease- 17.1 year old female Blood Gender: Female; Age: 17.1; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591969 Blood-crohn's disease- 9.5 year old male Blood Gender: Male; Age: 9.5; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591970 Blood-crohn's disease- 12.9 year old male Blood Gender: Male; Age: 12.9; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
Ulcerative colitis Case GSM3591971 Blood-ulcerative colitis- 11.3 year old female Blood Gender: Female; Age: 11.3; Disease type: UC - pancolitis; Tissue: Peripheral whole blood Case marker detected.
Crohn's disease Case GSM3591973 Blood-crohn's disease- 15.9 year old male Blood Gender: Male; Age: 15.9; Disease type: Crohn's Disease; Tissue: Peripheral whole blood Case marker detected.
66 additional case samples are hidden from this preview.
Control Control GSM3591886 Blood- control-14.5 year-female Blood Gender: Female; Age: 14.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591887 Blood- control- 18.1 year old female Blood Gender: Female; Age: 18.1; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591892 Blood- control - 9.4 year old female Blood Gender: Female; Age: 9.4; Disease type: Control - infect; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591893 Blood- control - 16.2 year old male Blood Gender: Male; Age: 16.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591894 Blood- control - 17.5 year old male Blood Gender: Male; Age: 17.5; Disease type: Control - infect; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591895 Blood- control - 10.5 year old female Blood Gender: Female; Age: 10.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591900 Blood- control- 17.9 year old male Blood Gender: Male; Age: 17.9; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591901 Blood- control- 18.6 year old female Blood Gender: Female; Age: 18.6; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591903 Blood- control- 16.9 year old male Blood Gender: Male; Age: 16.9; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591905 Blood- control- 15.2 year old female Blood Gender: Female; Age: 15.2; Disease type: Control - infect; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591907 Blood- control- 16.2 year old female Blood Gender: Female; Age: 16.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591910 Blood- control- 16.2 year old female2 Blood Gender: Female; Age: 16.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591911 Blood- control- 13.4 year old female Blood Gender: Female; Age: 13.4; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591912 Blood- control- 16.1 year old female Blood Gender: Female; Age: 16.1; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591917 Blood- control- 11.4 year old male Blood Gender: Male; Age: 11.4; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591918 Blood- control- 15.1 year old male Blood Gender: Male; Age: 15.1; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591919 Blood- control- 15.5 year old female Blood Gender: Female; Age: 15.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591920 Blood- control- 16.7 year old female Blood Gender: Female; Age: 16.7; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591921 Blood- control- 14.2 year old male Blood Gender: Male; Age: 14.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591922 Blood- control- 11.1 year old male Blood Gender: Male; Age: 11.1; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591925 Blood- control- 8.2 year old male Blood Gender: Male; Age: 8.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591926 Blood- control- 11.2 year old female Blood Gender: Female; Age: 11.2; Disease type: Control - celiac; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591927 Blood- control- 14.7 year old female Blood Gender: Female; Age: 14.7; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591929 Blood- control- 8.3 year old male Blood Gender: Male; Age: 8.3; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591931 Blood- control- 16.4 year old female Blood Gender: Female; Age: 16.4; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591933 Blood- control- 14.5 year old female Blood Gender: Female; Age: 14.5; Disease type: Control - infect; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591935 Blood- control- 16.9 year old female Blood Gender: Female; Age: 16.9; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591937 Blood- control- 18.5 year old female Blood Gender: Female; Age: 18.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591938 Blood- control- 10.9 year old male Blood Gender: Male; Age: 10.9; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591941 Blood- control- 11.5 year old female Blood Gender: Female; Age: 11.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591943 Blood- control- 15.3 year old male Blood Gender: Male; Age: 15.3; Disease type: Control--> CD; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591945 Blood- control- 18.3 year old female Blood Gender: Female; Age: 18.3; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591946 Blood- control- 8.5 year old male Blood Gender: Male; Age: 8.5; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591949 Blood- control- 13.2 year old male Blood Gender: Male; Age: 13.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591952 Blood- control- 10.1 year old male Blood Gender: Male; Age: 10.1; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591957 Blood- control- 13.2 year old female Blood Gender: Female; Age: 13.2; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591958 Blood- control- 15.5 year old male Blood Gender: Male; Age: 15.5; Disease type: Control (E.Coli) --> CD; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591972 Blood- control- 13.4 year old male Blood Gender: Male; Age: 13.4; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591983 Blood- control- 8.6 year old male Blood Gender: Male; Age: 8.6; Disease type: Control; Tissue: Peripheral whole blood Sample-local control marker detected.
Control Control GSM3591984 Tissue- control- 14.5 year old female Colon Gender: Female; Age: 14.5; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3591988 Tissue- control- 16.2 year old male Colon Gender: Male; Age: 16.2; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3591989 Tissue- control- 10.5 year old female Colon Gender: Female; Age: 10.5; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3591994 Tissue- control- 17.9 year old male Colon Gender: Male; Age: 17.9; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3591997 Tissue- control- 15.2 year old female Colon Gender: Female; Age: 15.2; Disease type: Control - infect; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3591999 Tissue- control- 16.2 year old female Colon Gender: Female; Age: 16.2; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3592002 Tissue- control- 13.4 year old female Colon Gender: Female; Age: 13.4; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3592003 Tissue- control- 16.1 year old female Colon Gender: Female; Age: 16.1; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3592008 Tissue- control- 11.4 year old male Colon Gender: Male; Age: 11.4; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3592009 Tissue- control- 15.1 year old male Colon Gender: Male; Age: 15.1; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
Control Control GSM3592010 Tissue- control- 15.5 year old female Colon Gender: Female; Age: 15.5; Disease type: Control; Tissue: Colon biopsy Sample-local control marker detected.
10 additional control samples are hidden from this preview.

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Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.