Transcriptional signatures that define Ulcerative Colitis in remission

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

28 case / 16 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 44 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Paulssen RH, Fenton C
Contact name: Christopher Fenton
Submission date: 2019-03-21
Last update: 2024-04-02
Organization: Universiry of Tromso
Department: GSCT
Public date: 2020-01-18
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL21697 NextSeq 550 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA528490

Summary

Background: This study addresses whether existing specific transcriptional profiles can improve and support the current status of the definition of ulcerative colitis (UC) remission apart from the existing endoscopic, histologic, and laboratory scoring systems. For that purpose, a well-stratified UC patient population in remission was compared to active UC and control patients and was investigated by applying the next-generation technology RNA-Seq. Methods: Mucosal biopsies from patients in remission (n = 14), patients with active UC (n = 14), and healthy control patients (n = 16) underwent whole-transcriptome RNA-Seq. Principal component analysis, cell deconvolution methods, gene profile enrichment, and pathway enrichment methods were applied to define a specific transcriptional signature of UC in remission. Results: Analyses revealed specific transcriptional signatures for UC in remission with increased expression of genes involved in O-glycosylation (MUC17, MUC3A, MUC5AC, MUC12, SPON1, B3GNT3), ephrin-mediated repulsion of cells (EFNB2E, EFNA3, EPHA10, EPHA1), GAP junction trafficking (TUBA1C, TUBA4A, TUBB4B, GJB3, CLTB), and decreased expression of several toll-like receptors (TLR1, TLR3, TLR5, TLR6). Conclusions: This study reveals specific transcriptional signatures for remission. Partial restoration and improvement of homeostasis in the epithelial mucus layer and revival of immunological functions were observed. A clear role for bacterial gut flora composition can be implied. The results can be useful for the development of treatment strategies for UC in remission and may be useful targets for further investigations aiming to predict the outcome of UC in the future.

Overall design

Mucosal biopsies from UC patients in remission (n=14), UC patients (n=14), and healthy controls (n=16) underwent RNA-Seq. Principal component analyse (PCA), cell deconvolution methods and diverse statistical methods were applied to obtain and characterize a dataset of significantly differentially expressed gens (DEGs) during UC remission. ** Raw data not provided due to patient privacy concerns. **

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 44 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 3 linked publications 3 DOIs Primary publication Anti-apoptotic genes and non-coding RNAs are potential outcome predictors for ulcerative colitis. Functional & integrative genomics, 2023 PubMed DOI DNA methylation fine-tunes pro-and anti-inflammatory signalling pathways in inactive ulcerative colitis tissue biopsies. Scientific reports, 2024 PubMed DOI Transcriptional Signatures That Define Ulcerative Colitis in Remission. Inflammatory bowel diseases, 2021 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Standard analyst review

Proceed only after the analyst confirms grouping, exclusions, and source files.

By Siftome standards, no expert review was triggered.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Ulcerative colitis Disease context came from Normalization rules.
Likely case group Remission 28 samples
Likely control group Healthy control 16 samples

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 3 publications; 3 DOIs available: PMID 32322884, PMID 37199828, PMID 38514698.
Publication context: Transcriptional Signatures That Define Ulcerative Colitis in Remission.. Inflammatory bowel diseases, 2021. PMID 32322884. DOI 10.1093/ibd/izaa075.
Publication context: Anti-apoptotic genes and non-coding RNAs are potential outcome predictors for ulcerative colitis.. Functional & integrative genomics, 2023. PMID 37199828. DOI 10.1007/s10142-023-01099-9.
Publication context: DNA methylation fine-tunes pro-and anti-inflammatory signalling pathways in inactive ulcerative colitis tissue biopsies.. Scientific reports, 2024. PMID 38514698. DOI 10.1038/s41598-024-57440-0.

Cautions

Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.

Normalized Fields

209 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM3682455 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682456 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682457 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682458 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682459 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682460 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682461 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682462 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682463 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682464 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682465 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682466 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682467 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682468 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682469 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682470 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682471 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682472 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682473 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682474 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682475 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682476 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682477 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682478 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682479 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682480 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682481 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682482 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682483 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682484 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682488 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682489 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682490 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682491 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682492 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682493 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682494 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682495 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682496 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682497 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM3682498 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colon source_name: Colon biopsy sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE128682 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE128682 dataset_title: Transcriptional signatures that define Ulcerative Colitis in remission organism: Homo sapiens assay_type: bulk RNA-seq processed_data... keyword match keyword match: bulk rna-seq

collection_method biopsy GSM3682455 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682456 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682457 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682458 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682459 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682460 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682461 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682462 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682463 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682464 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682465 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682466 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682467 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682468 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682469 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 15 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682470 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 16 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682471 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682472 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM3682498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary collection method match: biopsy

disease ulcerative colitis GSE128682 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE128682 dataset_title: Transcriptional signatures that define Ulcerative Colitis in remission organism: Homo sapiens assay_type: bulk RNA-seq processed_data... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682485 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682486 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682487 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682488 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682489 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682490 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682491 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682492 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682493 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682494 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682495 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682496 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682497 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM3682498 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Ulcerative Colitis sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary disease match: ulcerative colitis

organism Homo sapiens GSE128682 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE128682 dataset_title: Transcriptional signatures that define Ulcerative Colitis in remission organism: Homo sapiens assay_type: bulk RNA-seq processed_data... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM3682455 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682456 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682457 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682458 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682459 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682460 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682461 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682462 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682463 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682464 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682465 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682466 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682467 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682468 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682469 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 15 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682470 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Normal sample 16 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682471 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682472 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Remission sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM3682498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Ulcerative Colitis sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM3682455 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682456 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682457 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682458 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682459 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682460 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682461 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682462 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682463 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682464 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682465 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682466 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682467 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682468 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682469 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 15 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM3682470 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal sample 16 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary sample type match: normal

tissue colon GSM3682455 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682456 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682457 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682458 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682459 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682460 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682461 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682462 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682463 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682464 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682465 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682466 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682467 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682468 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682469 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 15 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682470 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Normal sample 16 Colon biopsy tissue: Mucosal biopsy; disease status: Healthy controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682471 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682472 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682473 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682474 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682475 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682476 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682477 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682478 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682479 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682480 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682481 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682482 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682483 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682484 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Remission sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Remission controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682485 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 1 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682486 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 2 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682487 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 3 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682488 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 4 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682489 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 5 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682490 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 6 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682491 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 7 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682492 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 8 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682493 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 9 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682494 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 10 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682495 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 11 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682496 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 12 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682497 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 13 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM3682498 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Ulcerative Colitis sample 14 Colon biopsy tissue: Mucosal biopsy; disease status: Ulcerative colitis controlled vocabulary controlled vocabulary tissue match: colon

Sample Group Preview

44 rows shown Show Hide

Study totals: Case 28 | Control 16 | Unassigned 0 | Excluded 0 | Ambiguous 0 44 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Remission	Case	GSM3682471	Remission sample 1	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682472	Remission sample 2	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682473	Remission sample 3	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682474	Remission sample 4	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682475	Remission sample 5	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682476	Remission sample 6	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682477	Remission sample 7	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682478	Remission sample 8	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682479	Remission sample 9	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682480	Remission sample 10	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682481	Remission sample 11	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682482	Remission sample 12	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682483	Remission sample 13	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Remission	Case	GSM3682484	Remission sample 14	Colon biopsy Tissue: Mucosal biopsy; Disease status: Remission	Explicit characteristic comparison arm detected.
Ulcerative colitis	Case	GSM3682485	Ulcerative Colitis sample 1	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682486	Ulcerative Colitis sample 2	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682487	Ulcerative Colitis sample 3	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682488	Ulcerative Colitis sample 4	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682489	Ulcerative Colitis sample 5	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682490	Ulcerative Colitis sample 6	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682491	Ulcerative Colitis sample 7	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682492	Ulcerative Colitis sample 8	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682493	Ulcerative Colitis sample 9	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682494	Ulcerative Colitis sample 10	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682495	Ulcerative Colitis sample 11	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682496	Ulcerative Colitis sample 12	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682497	Ulcerative Colitis sample 13	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Ulcerative colitis	Case	GSM3682498	Ulcerative Colitis sample 14	Colon biopsy Tissue: Mucosal biopsy; Disease status: Ulcerative colitis	Case marker detected.
Healthy control	Control	GSM3682455	Normal sample 1	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682456	Normal sample 2	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682457	Normal sample 3	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682458	Normal sample 4	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682459	Normal sample 5	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682460	Normal sample 6	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682461	Normal sample 7	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682462	Normal sample 8	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682463	Normal sample 9	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682464	Normal sample 10	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682465	Normal sample 11	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682466	Normal sample 12	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682467	Normal sample 13	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682468	Normal sample 14	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682469	Normal sample 15	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.
Healthy control	Control	GSM3682470	Normal sample 16	Colon biopsy Tissue: Mucosal biopsy; Disease status: Healthy	Sample-local control marker detected.

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Use as Discovery Cohort