Matching samples

GSE1402 · Juvenile Rheumatoid Arthritis Profiles In PBMC and SFMC

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (57)

GSM23159

Excluded

8003PBMC

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Does not meet requirement
        • The reported value differs from the selected requirement.
        • 8003PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Does not meet requirement
          • The reported value differs from the selected requirement.
          • 8003PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
        Source metadata
        Source name
        PBMC
        Characteristics
        none
        Description
        PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM23159
sample_title: 8003PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

        GSM23160

        Excluded

        817PBMC

        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Does not meet requirement
              • The reported value differs from the selected requirement.
              • 817PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), pe...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Does not meet requirement
                • The reported value differs from the selected requirement.
                • 817PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), pe...
              Source metadata
              Source name
              PBMC
              Characteristics
              none
              Description
              PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM23160
sample_title: 817PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

              GSM23161

              Excluded

              9161PBMC

              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • 9161PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Does not meet requirement
                      • The reported value differs from the selected requirement.
                      • 9161PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
                    Source metadata
                    Source name
                    PBMC
                    Characteristics
                    none
                    Description
                    PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM23161
sample_title: 9161PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                    GSM23162

                    Excluded

                    9264PBMC

                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Does not meet requirement
                          • The reported value differs from the selected requirement.
                          • 9264PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • 9264PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), p...
                          Source metadata
                          Source name
                          PBMC
                          Characteristics
                          none
                          Description
                          PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM23162
sample_title: 9264PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                          GSM23163

                          Excluded

                          976PBMC

                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • 976PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), pe...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Does not meet requirement
                                  • The reported value differs from the selected requirement.
                                  • 976PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), pe...
                                Source metadata
                                Source name
                                PBMC
                                Characteristics
                                none
                                Description
                                PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM23163
sample_title: 976PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from pauciaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                GSM23164

                                Excluded

                                1073PBMC

                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                      • The reported value differs from the selected requirement.
                                      • 1073PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • 1073PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                      Source metadata
                                      Source name
                                      PBMC
                                      Characteristics
                                      none
                                      Description
                                      PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM23164
sample_title: 1073PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                      GSM23165

                                      Excluded

                                      1081PBMC

                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • 1081PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Does not meet requirement
                                              • The reported value differs from the selected requirement.
                                              • 1081PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                            Source metadata
                                            Source name
                                            PBMC
                                            Characteristics
                                            none
                                            Description
                                            PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM23165
sample_title: 1081PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                            GSM23166

                                            Excluded

                                            1087PBMC

                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                  • The reported value differs from the selected requirement.
                                                  • 1087PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • 1087PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                  Source metadata
                                                  Source name
                                                  PBMC
                                                  Characteristics
                                                  none
                                                  Description
                                                  PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM23166
sample_title: 1087PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                  GSM23167

                                                  Excluded

                                                  19PBMC

                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • 19PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), perip...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                          • The reported value differs from the selected requirement.
                                                          • 19PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), perip...
                                                        Source metadata
                                                        Source name
                                                        PBMC
                                                        Characteristics
                                                        none
                                                        Description
                                                        PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM23167
sample_title: 19PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                        GSM23168

                                                        Excluded

                                                        801PBMC

                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                              • The reported value differs from the selected requirement.
                                                              • 801PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • 801PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                              Source metadata
                                                              Source name
                                                              PBMC
                                                              Characteristics
                                                              none
                                                              Description
                                                              PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM23168
sample_title: 801PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                              GSM23169

                                                              Excluded

                                                              824PBMC

                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • 824PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                      • The reported value differs from the selected requirement.
                                                                      • 824PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                    Source metadata
                                                                    Source name
                                                                    PBMC
                                                                    Characteristics
                                                                    none
                                                                    Description
                                                                    PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM23169
sample_title: 824PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                    GSM23170

                                                                    Excluded

                                                                    831PBMC

                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                          • The reported value differs from the selected requirement.
                                                                          • 831PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • 831PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                          Source metadata
                                                                          Source name
                                                                          PBMC
                                                                          Characteristics
                                                                          none
                                                                          Description
                                                                          PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM23170
sample_title: 831PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                          GSM23171

                                                                          Excluded

                                                                          850PBMC

                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • 850PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                  • The reported value differs from the selected requirement.
                                                                                  • 850PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                Source metadata
                                                                                Source name
                                                                                PBMC
                                                                                Characteristics
                                                                                none
                                                                                Description
                                                                                PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM23171
sample_title: 850PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                GSM23172

                                                                                Excluded

                                                                                872PBMC

                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                      • The reported value differs from the selected requirement.
                                                                                      • 872PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • 872PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                      Source metadata
                                                                                      Source name
                                                                                      PBMC
                                                                                      Characteristics
                                                                                      none
                                                                                      Description
                                                                                      PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM23172
sample_title: 872PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                      GSM23173

                                                                                      Excluded

                                                                                      878PBMC

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • 878PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                              • The reported value differs from the selected requirement.
                                                                                              • 878PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                            Source metadata
                                                                                            Source name
                                                                                            PBMC
                                                                                            Characteristics
                                                                                            none
                                                                                            Description
                                                                                            PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM23173
sample_title: 878PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                            GSM23174

                                                                                            Excluded

                                                                                            894PBMC

                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                  • The reported value differs from the selected requirement.
                                                                                                  • 894PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • 894PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  PBMC
                                                                                                  Characteristics
                                                                                                  none
                                                                                                  Description
                                                                                                  PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM23174
sample_title: 894PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                                  GSM23175

                                                                                                  Excluded

                                                                                                  912PBMC

                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • 912PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                          • The reported value differs from the selected requirement.
                                                                                                          • 912PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        PBMC
                                                                                                        Characteristics
                                                                                                        none
                                                                                                        Description
                                                                                                        PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM23175
sample_title: 912PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                                        GSM23176

                                                                                                        Excluded

                                                                                                        9137PBMC

                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                              • The reported value differs from the selected requirement.
                                                                                                              • 9137PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • 9137PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              PBMC
                                                                                                              Characteristics
                                                                                                              none
                                                                                                              Description
                                                                                                              PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM23176
sample_title: 9137PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                                              GSM23177

                                                                                                              Excluded

                                                                                                              9272PBMC

                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • 9272PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                      • 9272PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), per...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    PBMC
                                                                                                                    Characteristics
                                                                                                                    none
                                                                                                                    Description
                                                                                                                    PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM23177
sample_title: 9272PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                                                    GSM23178

                                                                                                                    Excluded

                                                                                                                    993PBMC

                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                          • 993PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                            • 993PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peri...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          PBMC
                                                                                                                          Characteristics
                                                                                                                          none
                                                                                                                          Description
                                                                                                                          PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM23178
sample_title: 993PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from polyaticular course JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), peripheral blood mononuclear cells (PBMC)

                                                                                                                          GSM23179

                                                                                                                          Excluded

                                                                                                                          18042PBMC

                                                                                                                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                • 18042PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                  • 18042PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                      • 18042PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                        • 18042PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      PBMC
                                                                                                                                      Characteristics
                                                                                                                                      none
                                                                                                                                      Description
                                                                                                                                      PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM23179
sample_title: 18042PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                      GSM23180

                                                                                                                                      Excluded

                                                                                                                                      18057PBMC

                                                                                                                                      Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                            • 18057PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                              • 18057PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                            • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                  • 18057PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                    • 18057PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  PBMC
                                                                                                                                                  Characteristics
                                                                                                                                                  none
                                                                                                                                                  Description
                                                                                                                                                  PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM23180
sample_title: 18057PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                                  GSM23181

                                                                                                                                                  Excluded

                                                                                                                                                  7177PBMC

                                                                                                                                                  Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                        • 7177PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                      • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                          • 7177PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                        • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                              • 7177PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                            • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                • 7177PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              PBMC
                                                                                                                                                              Characteristics
                                                                                                                                                              none
                                                                                                                                                              Description
                                                                                                                                                              PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM23181
sample_title: 7177PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                                              GSM23182

                                                                                                                                                              Excluded

                                                                                                                                                              845PBMC

                                                                                                                                                              Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                    • 845PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                      • 845PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                          • 845PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                            • 845PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          PBMC
                                                                                                                                                                          Characteristics
                                                                                                                                                                          none
                                                                                                                                                                          Description
                                                                                                                                                                          PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM23182
sample_title: 845PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                                                          GSM23183

                                                                                                                                                                          Excluded

                                                                                                                                                                          9150PBMC

                                                                                                                                                                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                • 9150PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                  • 9150PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                      • 9150PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                        • 9150PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      PBMC
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      none
                                                                                                                                                                                      Description
                                                                                                                                                                                      PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM23183
sample_title: 9150PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                                                                      GSM23184

                                                                                                                                                                                      Excluded

                                                                                                                                                                                      9245PBMC

                                                                                                                                                                                      Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                      • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                            • 9245PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                              • 9245PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                            • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                  • 9245PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                    • 9245PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                  Source name
                                                                                                                                                                                                  PBMC
                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                  none
                                                                                                                                                                                                  Description
                                                                                                                                                                                                  PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)
                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                  Source
                                                                                                                                                                                                  GEO
                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                  sample_accession: GSM23184
sample_title: 9245PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropathy (JSpA), peripheral blood mononuclear cells (PBMC)

                                                                                                                                                                                                  GSM23185

                                                                                                                                                                                                  Excluded

                                                                                                                                                                                                  1082PBMC

                                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                        • 1082PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                          • 1082PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        PBMC
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        none
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM23185
sample_title: 1082PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                        GSM23186

                                                                                                                                                                                                        Excluded

                                                                                                                                                                                                        1083PBMC

                                                                                                                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                              • 1083PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                • 1083PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                              Source name
                                                                                                                                                                                                              PBMC
                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                              none
                                                                                                                                                                                                              Description
                                                                                                                                                                                                              PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                              Source
                                                                                                                                                                                                              GEO
                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                              sample_accession: GSM23186
sample_title: 1083PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                              GSM23187

                                                                                                                                                                                                              Excluded

                                                                                                                                                                                                              1085PBMC

                                                                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                    • 1085PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                      • 1085PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    PBMC
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    none
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM23187
sample_title: 1085PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                    GSM23188

                                                                                                                                                                                                                    Excluded

                                                                                                                                                                                                                    1087CTRPBMC

                                                                                                                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                          • 1087CTRPBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                            • 1087CTRPBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                          PBMC
                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                          none
                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                          PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                          sample_accession: GSM23188
sample_title: 1087CTRPBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                          GSM23189

                                                                                                                                                                                                                          Excluded

                                                                                                                                                                                                                          1089PBMC

                                                                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                • 1089PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                  • 1089PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                PBMC
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                none
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM23189
sample_title: 1089PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                GSM23190

                                                                                                                                                                                                                                Excluded

                                                                                                                                                                                                                                1095PBMC

                                                                                                                                                                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                      • 1095PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                        • 1095PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                      PBMC
                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                      none
                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                      PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                      sample_accession: GSM23190
sample_title: 1095PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                      GSM23191

                                                                                                                                                                                                                                      Excluded

                                                                                                                                                                                                                                      7021.31PBMC

                                                                                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                            • 7021.31PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                              • 7021.31PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            PBMC
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            none
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM23191
sample_title: 7021.31PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                            GSM23192

                                                                                                                                                                                                                                            Excluded

                                                                                                                                                                                                                                            7113.3PBMC

                                                                                                                                                                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                  • 7113.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                    • 7113.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                  PBMC
                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                  none
                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                  PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                  sample_accession: GSM23192
sample_title: 7113.3PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                                  GSM23193

                                                                                                                                                                                                                                                  Excluded

                                                                                                                                                                                                                                                  7118.3PBMC

                                                                                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                        • 7118.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                          • 7118.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        PBMC
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        none
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM23193
sample_title: 7118.3PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                                        GSM23194

                                                                                                                                                                                                                                                        Excluded

                                                                                                                                                                                                                                                        7149.3PBMC

                                                                                                                                                                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                              • 7149.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                • 7149.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                              PBMC
                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                              none
                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                              PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                              sample_accession: GSM23194
sample_title: 7149.3PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                                              GSM23195

                                                                                                                                                                                                                                                              Excluded

                                                                                                                                                                                                                                                              813.3PBMC

                                                                                                                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Sample-local control marker detected.

                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                    • 813.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                      • 813.3PBMC PBMC none PBMC isolated by Ficoll gradient centrifugation from control Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                    PBMC
                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                    none
                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                    PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)
                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                    sample_accession: GSM23195
sample_title: 813.3PBMC
source_name: PBMC
characteristics: none
description: PBMC isolated by Ficoll gradient centrifugation from control | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Control, peripheral blood mononuclear cell (PBMC)

                                                                                                                                                                                                                                                                    GSM23196

                                                                                                                                                                                                                                                                    Excluded

                                                                                                                                                                                                                                                                    8003SFMC

                                                                                                                                                                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                          • 8003SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                            • 8003SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                          SFMC
                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                          none
                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                          SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                          sample_accession: GSM23196
sample_title: 8003SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                          GSM23197

                                                                                                                                                                                                                                                                          Excluded

                                                                                                                                                                                                                                                                          817SFMC

                                                                                                                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                • 817SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial...
                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                  • 817SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial...
                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                SFMC
                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                none
                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                sample_accession: GSM23197
sample_title: 817SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                GSM23198

                                                                                                                                                                                                                                                                                Excluded

                                                                                                                                                                                                                                                                                9161SFMC

                                                                                                                                                                                                                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                      • 9161SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                        • 9161SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                      SFMC
                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                      none
                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                      SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                      sample_accession: GSM23198
sample_title: 9161SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                      GSM23199

                                                                                                                                                                                                                                                                                      Excluded

                                                                                                                                                                                                                                                                                      9264SFMC

                                                                                                                                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                            • 9264SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                              • 9264SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                            SFMC
                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                            none
                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                            SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                            sample_accession: GSM23199
sample_title: 9264SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                            GSM23200

                                                                                                                                                                                                                                                                                            Excluded

                                                                                                                                                                                                                                                                                            976SFMC

                                                                                                                                                                                                                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                  • 976SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial...
                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                    • 976SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial...
                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                  SFMC
                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                  none
                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                  SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                  sample_accession: GSM23200
sample_title: 976SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from pauciarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Pauciarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                  GSM23201

                                                                                                                                                                                                                                                                                                  Excluded

                                                                                                                                                                                                                                                                                                  1073SFMC

                                                                                                                                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                        • 1073SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                          • 1073SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                        SFMC
                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                        none
                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                        SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                        sample_accession: GSM23201
sample_title: 1073SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                        GSM23202

                                                                                                                                                                                                                                                                                                        Excluded

                                                                                                                                                                                                                                                                                                        1087PBSFMC

                                                                                                                                                                                                                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                              • 1087PBSFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                • 1087PBSFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovia...
                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                              SFMC
                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                              none
                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                              SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                              sample_accession: GSM23202
sample_title: 1087PBSFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                              GSM23203

                                                                                                                                                                                                                                                                                                              Excluded

                                                                                                                                                                                                                                                                                                              824SFMC

                                                                                                                                                                                                                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                    • 824SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                      • 824SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                                                                                                                    SFMC
                                                                                                                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                                                                                                                    none
                                                                                                                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                                                                                                                    SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                                                                                                                    sample_accession: GSM23203
sample_title: 824SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                    GSM23204

                                                                                                                                                                                                                                                                                                                    Excluded

                                                                                                                                                                                                                                                                                                                    831SFMC

                                                                                                                                                                                                                                                                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                          • 831SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                            • 831SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                          SFMC
                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                          none
                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                          SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                          sample_accession: GSM23204
sample_title: 831SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                          GSM23205

                                                                                                                                                                                                                                                                                                                          Excluded

                                                                                                                                                                                                                                                                                                                          850SFMC

                                                                                                                                                                                                                                                                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                • 850SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                  • 850SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                                                                                                                SFMC
                                                                                                                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                                                                                                                none
                                                                                                                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                                                                                                                SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                                                                                                                sample_accession: GSM23205
sample_title: 850SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                GSM23206

                                                                                                                                                                                                                                                                                                                                Excluded

                                                                                                                                                                                                                                                                                                                                872SFMC

                                                                                                                                                                                                                                                                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                      • 872SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                        • 872SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                      SFMC
                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                      none
                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                      SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM23206
sample_title: 872SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                      GSM23207

                                                                                                                                                                                                                                                                                                                                      Excluded

                                                                                                                                                                                                                                                                                                                                      878SFMC

                                                                                                                                                                                                                                                                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                            • 878SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                              • 878SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                                                                                                                            SFMC
                                                                                                                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                                                                                                                            none
                                                                                                                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                                                                                                                            SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                                                                                                                            sample_accession: GSM23207
sample_title: 878SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                            GSM23208

                                                                                                                                                                                                                                                                                                                                            Excluded

                                                                                                                                                                                                                                                                                                                                            9137SFMC

                                                                                                                                                                                                                                                                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                  • 9137SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                    • 9137SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                  SFMC
                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                  none
                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                  SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM23208
sample_title: 9137SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                  GSM23209

                                                                                                                                                                                                                                                                                                                                                  Excluded

                                                                                                                                                                                                                                                                                                                                                  9272SFMC

                                                                                                                                                                                                                                                                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                        • 9272SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                          • 9272SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial ...
                                                                                                                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                                                                                                                        SFMC
                                                                                                                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                                                                                                                        none
                                                                                                                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                                                                                                                        SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                        sample_accession: GSM23209
sample_title: 9272SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                        GSM23210

                                                                                                                                                                                                                                                                                                                                                        Excluded

                                                                                                                                                                                                                                                                                                                                                        993SFMC

                                                                                                                                                                                                                                                                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Case marker detected.

                                                                                                                                                                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                              • 993SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                • 993SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial f...
                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                              SFMC
                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                              none
                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                              SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM23210
sample_title: 993SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from polyarticular JRA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Polyarticular course, juvenile rheumatoid arthritis (JRA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                              GSM23211

                                                                                                                                                                                                                                                                                                                                                              Excluded

                                                                                                                                                                                                                                                                                                                                                              18042SFMC

                                                                                                                                                                                                                                                                                                                                                              Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                  • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                    • 18042SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                    • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                      • 18042SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                        • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                          • 18042SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                          • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                            • 18042SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                          SFMC
                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                          none
                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                          SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM23211
sample_title: 18042SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                                          GSM23212

                                                                                                                                                                                                                                                                                                                                                                          Excluded

                                                                                                                                                                                                                                                                                                                                                                          18057SFMC

                                                                                                                                                                                                                                                                                                                                                                          Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                          • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                            • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                              • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                • 18057SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                              • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                  • 18057SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                  • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                    • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                      • 18057SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                    • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                      • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                        • 18057SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                      Source metadata
                                                                                                                                                                                                                                                                                                                                                                                      Source name
                                                                                                                                                                                                                                                                                                                                                                                      SFMC
                                                                                                                                                                                                                                                                                                                                                                                      Characteristics
                                                                                                                                                                                                                                                                                                                                                                                      none
                                                                                                                                                                                                                                                                                                                                                                                      Description
                                                                                                                                                                                                                                                                                                                                                                                      SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                      Source
                                                                                                                                                                                                                                                                                                                                                                                      GEO
                                                                                                                                                                                                                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                      sample_accession: GSM23212
sample_title: 18057SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                                                      GSM23213

                                                                                                                                                                                                                                                                                                                                                                                      Excluded

                                                                                                                                                                                                                                                                                                                                                                                      7177SFMC

                                                                                                                                                                                                                                                                                                                                                                                      Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                      Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                      • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                        • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                          • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                            • 7177SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                          • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                            • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                              • 7177SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                            • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                              • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                  • 7177SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                  • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                    • 7177SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                  Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                  Source name
                                                                                                                                                                                                                                                                                                                                                                                                  SFMC
                                                                                                                                                                                                                                                                                                                                                                                                  Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                  none
                                                                                                                                                                                                                                                                                                                                                                                                  Description
                                                                                                                                                                                                                                                                                                                                                                                                  SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                  Source
                                                                                                                                                                                                                                                                                                                                                                                                  GEO
                                                                                                                                                                                                                                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                  sample_accession: GSM23213
sample_title: 7177SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                                                                  GSM23214

                                                                                                                                                                                                                                                                                                                                                                                                  Excluded

                                                                                                                                                                                                                                                                                                                                                                                                  845SFMC

                                                                                                                                                                                                                                                                                                                                                                                                  Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                  • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                    • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                      • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                        • 845SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                      • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                        • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                          • 845SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                        • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                          • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                            • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                              • 845SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                            • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                              • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                                • 845SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                              Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                              Source name
                                                                                                                                                                                                                                                                                                                                                                                                              SFMC
                                                                                                                                                                                                                                                                                                                                                                                                              Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                              none
                                                                                                                                                                                                                                                                                                                                                                                                              Description
                                                                                                                                                                                                                                                                                                                                                                                                              SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                              Source
                                                                                                                                                                                                                                                                                                                                                                                                              GEO
                                                                                                                                                                                                                                                                                                                                                                                                              Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                              sample_accession: GSM23214
sample_title: 845SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)

                                                                                                                                                                                                                                                                                                                                                                                                              GSM23215

                                                                                                                                                                                                                                                                                                                                                                                                              Excluded

                                                                                                                                                                                                                                                                                                                                                                                                              9245SFMC

                                                                                                                                                                                                                                                                                                                                                                                                              Excluded: at least one selected requirement is not met. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Does not meet requirement. Case: specimen category excludes: Biofluid — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Does not meet requirement. Control: specimen category excludes: Biofluid — Does not meet requirement. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                                                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                                                                                                                                                                                                                                                                              • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                  • Case: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                                    • 9245SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                                  • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                    • Case: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                                      • 9245SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                                    • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                      • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                                                                                                                                                                                        • Control: specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                                          • 9245SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                                        • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                                                                                                                                                                                                                          • Control: specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                                                                                                                                                                                                                                                                                                                            • The reported value differs from the selected requirement.
                                                                                                                                                                                                                                                                                                                                                                                                                            • 9245SFMC SFMC none SFMC isolated by Ficoll gradient centrifugation from JSpA patient Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                                          Source metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          Source name
                                                                                                                                                                                                                                                                                                                                                                                                                          SFMC
                                                                                                                                                                                                                                                                                                                                                                                                                          Characteristics
                                                                                                                                                                                                                                                                                                                                                                                                                          none
                                                                                                                                                                                                                                                                                                                                                                                                                          Description
                                                                                                                                                                                                                                                                                                                                                                                                                          SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA). 57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                                                                                                                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                                                                                                                                                                                          Source
                                                                                                                                                                                                                                                                                                                                                                                                                          GEO
                                                                                                                                                                                                                                                                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                                                                                                                                                                                                                                                                          sample_accession: GSM23215
sample_title: 9245SFMC
source_name: SFMC
characteristics: none
description: SFMC isolated by Ficoll gradient centrifugation from JSpA patient | Biotinylated cRNA was synthesized from total RNA (Enzo; Farmingdale, NY) and processed according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix; Santa Clara, CA).  57 samples: 5 pauciarticular PBMC, 15 polyarticular PBMC, 11 control PMBC, 6 JSpA PBMC, 5 pauciarticular SFMC, 10 polyarticular PBMC, 5 JSpA SFMC classified by course. | Keywords = Juvenile spondyloarthropahty (JSpA), synovial fluid mononuclear cells (SFMC)