GSE141934

Transcriptional data of inflamatory arthritis T cells.

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

41 case / 59 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Summary

With a focus on rheumatoid arthritis (RA), we sought new insight into genetic mechanisms of adaptive immune dysregulation to help prioritise molecular pathways for targeting in this and related immune pathologies. Whole genome methylation and transcriptional data from isolated CD4+ T cells and B cells of >100 genotyped and phenotyped inflammatory arthritis patients, all of whom were naïve to immunomodulatory treatments, were obtained. Analysis integrated these comprehensive data with GWAS findings across IMDs and other publically available resources.

Overall design

Suspected inflammatory arthritis patients of Northern European ancestry were recruited prior to treatment with immunomodulatory drugs. RA patients were classified using current, internationally accepted criteria, and matched with disease controls in respect of demographic and clinical characteristics. CD4+ cells were isolated from fresh peripheral blood using magnetic bead-based positive selection, with isolation of paired, high-integrity RNA and DNA using the AllPrep DNA/RNA Mini Kit (Qiagen, UK). The majority of samples are from GSE80513.

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
100 GSM samples
Primary source
recount3

Planned trusted source for processed count availability.

No match found
Expression Atlas

Planned source for curated expression experiment links.

No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

1 linked publication 1 DOI

Primary publication

  1. Lymphocyte DNA methylation mediates genetic risk at shared immune-mediated disease loci. The Journal of allergy and clinical immunology, 2020
Available

Metadata Quality Components

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Rheumatoid arthritis Disease context came from Normalization rules.
  • Likely case group Rheumatoid arthritis 41 samples
  • Likely control group Control 59 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
  • Interpreted disease metadata: Rheumatoid arthritis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 1 publication; 1 DOI available: PMID 31945409.
  • Publication context: Lymphocyte DNA methylation mediates genetic risk at shared immune-mediated disease loci.. The Journal of allergy and clinical immunology, 2020. PMID 31945409. DOI 10.1016/j.jaci.2019.12.910.

Cautions

  • Downgraded for tissue search because it is a biofluid cohort.
  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
  • Non-RNA-seq assay context downgraded for RNA-seq dataset discovery.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because the assay context is not primary RNA-seq expression profiling.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

345 fields

Sample Group Preview

showing 91 of 100 preview rows
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Study totals: Case 41 | Control 59 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 91 of 100 preview rows
Group Role Accession Title Source / characteristics Reason
Rheumatoid arthritis Case GSM4216498 T cells Newcastle Early Arthritis Clinic number 1072 Rheumatoid Arthritis T cells Patient: 1072; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216504 T cells Newcastle Early Arthritis Clinic number 1083 Rheumatoid Arthritis T cells Patient: 1083; Gender: F; Age: 63; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216505 T cells Newcastle Early Arthritis Clinic number 1094 Rheumatoid Arthritis T cells Patient: 1094; Gender: M; Age: 61; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216507 T cells Newcastle Early Arthritis Clinic number 1067 Rheumatoid Arthritis T cells Patient: 1067; Gender: M; Age: 79; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216508 T cells Newcastle Early Arthritis Clinic number 1051 Rheumatoid Arthritis T cells Patient: 1051; Gender: F; Age: 69; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216512 T cells Newcastle Early Arthritis Clinic number 2010 Rheumatoid Arthritis T cells Patient: 2010; Gender: F; Age: 46; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216514 T cells Newcastle Early Arthritis Clinic number 2029 Rheumatoid Arthritis T cells Patient: 2029; Gender: M; Age: 59; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216521 T cells Newcastle Early Arthritis Clinic number 2072 Rheumatoid Arthritis T cells Patient: 2072; Gender: F; Age: 58; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216522 T cells Newcastle Early Arthritis Clinic number 2090 Rheumatoid Arthritis T cells Patient: 2090; Gender: F; Age: 57; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216525 T cells Newcastle Early Arthritis Clinic number 1003 Rheumatoid Arthritis T cells Patient: 1003; Gender: M; Age: 51; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216527 T cells Newcastle Early Arthritis Clinic number 2030 Rheumatoid Arthritis T cells Patient: 2030; Gender: M; Age: 57; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216533 T cells Newcastle Early Arthritis Clinic number 2042 Rheumatoid Arthritis T cells Patient: 2042; Gender: M; Age: 61; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216535 T cells Newcastle Early Arthritis Clinic number 2140 Rheumatoid Arthritis T cells Patient: 2140; Gender: M; Age: 74; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216539 T cells Newcastle Early Arthritis Clinic number 2231 Rheumatoid Arthritis T cells Patient: 2231; Gender: F; Age: 56; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216542 T cells Newcastle Early Arthritis Clinic number 827 Rheumatoid Arthritis T cells Patient: 827; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216548 T cells Newcastle Early Arthritis Clinic number 1005 Rheumatoid Arthritis T cells Patient: 1005; Gender: F; Age: 69; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216549 T cells Newcastle Early Arthritis Clinic number 932 Rheumatoid Arthritis T cells Patient: 932; Gender: F; Age: 73; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216550 T cells Newcastle Early Arthritis Clinic number 1010 Rheumatoid Arthritis T cells Patient: 1010; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216551 T cells Newcastle Early Arthritis Clinic number 844 Rheumatoid Arthritis T cells Patient: 844; Gender: F; Age: 58; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216552 T cells Newcastle Early Arthritis Clinic number 838 Rheumatoid Arthritis T cells Patient: 838; Gender: F; Age: 27; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216553 T cells Newcastle Early Arthritis Clinic number 840 Rheumatoid Arthritis T cells Patient: 840; Gender: M; Age: 68; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216555 T cells Newcastle Early Arthritis Clinic number 915 Rheumatoid Arthritis T cells Patient: 915; Gender: F; Age: 39; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216564 T cells Newcastle Early Arthritis Clinic number 810 Rheumatoid Arthritis T cells Patient: 810; Gender: M; Age: 56; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216565 T cells Newcastle Early Arthritis Clinic number 1032 Rheumatoid Arthritis T cells Patient: 1032; Gender: F; Age: 68; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216566 T cells Newcastle Early Arthritis Clinic number 1042 Rheumatoid Arthritis T cells Patient: 1042; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216567 T cells Newcastle Early Arthritis Clinic number 938 Rheumatoid Arthritis T cells Patient: 938; Gender: M; Age: 74; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216572 T cells Newcastle Early Arthritis Clinic number 995 Rheumatoid Arthritis T cells Patient: 995; Gender: F; Age: 73; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216573 T cells Newcastle Early Arthritis Clinic number 1000 Rheumatoid Arthritis T cells Patient: 1000; Gender: F; Age: 74; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216574 T cells Newcastle Early Arthritis Clinic number 996 Rheumatoid Arthritis T cells Patient: 996; Gender: F; Age: 53; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216576 T cells Newcastle Early Arthritis Clinic number 854 Rheumatoid Arthritis T cells Patient: 854; Gender: M; Age: 49; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216577 T cells Newcastle Early Arthritis Clinic number 882 Rheumatoid Arthritis T cells Patient: 882; Gender: F; Age: 27; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216581 T cells Newcastle Early Arthritis Clinic number 896 Rheumatoid Arthritis T cells Patient: 896; Gender: F; Age: 30; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216583 T cells Newcastle Early Arthritis Clinic number 930 Rheumatoid Arthritis T cells Patient: 930; Gender: F; Age: 69; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216584 T cells Newcastle Early Arthritis Clinic number 934 Rheumatoid Arthritis T cells Patient: 934; Gender: M; Age: 79; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216585 T cells Newcastle Early Arthritis Clinic number 926 Rheumatoid Arthritis T cells Patient: 926; Gender: M; Age: 61; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216588 T cells Newcastle Early Arthritis Clinic number 929 Rheumatoid Arthritis T cells Patient: 929; Gender: F; Age: 48; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216590 T cells Newcastle Early Arthritis Clinic number 946 Rheumatoid Arthritis T cells Patient: 946; Gender: M; Age: 43; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216591 T cells Newcastle Early Arthritis Clinic number 975 Rheumatoid Arthritis T cells Patient: 975; Gender: F; Age: 54; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216592 T cells Newcastle Early Arthritis Clinic number 978 Rheumatoid Arthritis T cells Patient: 978; Gender: F; Age: 62; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216596 T cells Newcastle Early Arthritis Clinic number 992 Rheumatoid Arthritis T cells Patient: 992; Gender: F; Age: 60; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Rheumatoid arthritis Case GSM4216597 T cells Newcastle Early Arthritis Clinic number 974 Rheumatoid Arthritis T cells Patient: 974; Gender: F; Age: 69; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Rheumatoid Arthritis; Working_diagnosis: Rheumatoid Arthritis Case marker detected.
Control Control GSM4216499 T cells Newcastle Early Arthritis Clinic number 1085 Disease control T cells Patient: 1085; Gender: F; Age: 43; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216500 T cells Newcastle Early Arthritis Clinic number 1076 Disease control T cells Patient: 1076; Gender: F; Age: 66; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216501 T cells Newcastle Early Arthritis Clinic number 1087 Disease control T cells Patient: 1087; Gender: M; Age: 55; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216502 T cells Newcastle Early Arthritis Clinic number 1080 Disease control T cells Patient: 1080; Gender: F; Age: 52; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216503 T cells Newcastle Early Arthritis Clinic number 1088 Disease control T cells Patient: 1088; Gender: F; Age: 54; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216506 T cells Newcastle Early Arthritis Clinic number 1050 Disease control T cells Patient: 1050; Gender: M; Age: 58; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216509 T cells Newcastle Early Arthritis Clinic number 1054 Disease control T cells Patient: 1054; Gender: F; Age: 57; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Osteoarthritis Sample-local control marker detected.
Control Control GSM4216510 T cells Newcastle Early Arthritis Clinic number 1070 Disease control T cells Patient: 1070; Gender: F; Age: 46; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216511 T cells Newcastle Early Arthritis Clinic number 1058 Disease control T cells Patient: 1058; Gender: F; Age: 44; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Non-Inflammatory; Working_diagnosis: Non-Inflammatory Sample-local control marker detected.
Control Control GSM4216513 T cells Newcastle Early Arthritis Clinic number 2012 Disease control T cells Patient: 2012; Gender: F; Age: 63; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216515 T cells Newcastle Early Arthritis Clinic number 2075 Disease control T cells Patient: 2075; Gender: M; Age: 81; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216516 T cells Newcastle Early Arthritis Clinic number 2062 Disease control T cells Patient: 2062; Gender: M; Age: 60; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216517 T cells Newcastle Early Arthritis Clinic number 2078 Disease control T cells Patient: 2078; Gender: M; Age: 92; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216518 T cells Newcastle Early Arthritis Clinic number 2086 Disease control T cells Patient: 2086; Gender: F; Age: 45; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Non-Inflammatory; Working_diagnosis: Non-Inflammatory Sample-local control marker detected.
Control Control GSM4216519 T cells Newcastle Early Arthritis Clinic number 2087 Disease control T cells Patient: 2087; Gender: F; Age: 47; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216520 T cells Newcastle Early Arthritis Clinic number 2067 Disease control T cells Patient: 2067; Gender: F; Age: 27; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Non-Inflammatory; Working_diagnosis: Non-Inflammatory Sample-local control marker detected.
Control Control GSM4216523 T cells Newcastle Early Arthritis Clinic number 1019 Disease control T cells Patient: 1019; Gender: F; Age: 38; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Osteoarthritis Sample-local control marker detected.
Control Control GSM4216524 T cells Newcastle Early Arthritis Clinic number 1020 Disease control T cells Patient: 1020; Gender: M; Age: 45; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Undifferentiated Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216526 T cells Newcastle Early Arthritis Clinic number 1008 Disease control T cells Patient: 1008; Gender: M; Age: 70; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216528 T cells Newcastle Early Arthritis Clinic number 2044 Disease control T cells Patient: 2044; Gender: F; Age: 56; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216529 T cells Newcastle Early Arthritis Clinic number 2034 Disease control T cells Patient: 2034; Gender: F; Age: 56; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Undifferentiated Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216530 T cells Newcastle Early Arthritis Clinic number 2047 Disease control T cells Patient: 2047; Gender: M; Age: 51; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216531 T cells Newcastle Early Arthritis Clinic number 2052 Disease control T cells Patient: 2052; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Non-Inflammatory Sample-local control marker detected.
Control Control GSM4216532 T cells Newcastle Early Arthritis Clinic number 2040 Disease control T cells Patient: 2040; Gender: F; Age: 53; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Osteoarthritis Sample-local control marker detected.
Control Control GSM4216534 T cells Newcastle Early Arthritis Clinic number 2054 Disease control T cells Patient: 2054; Gender: M; Age: 66; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216536 T cells Newcastle Early Arthritis Clinic number 2144 Disease control T cells Patient: 2144; Gender: M; Age: 51; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Other Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216537 T cells Newcastle Early Arthritis Clinic number 2222 Disease control T cells Patient: 2222; Gender: F; Age: 46; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216538 T cells Newcastle Early Arthritis Clinic number 2145 Disease control T cells Patient: 2145; Gender: F; Age: 49; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Enteropathic Arthritis; Working_diagnosis: Enteropathic Arthritis Sample-local control marker detected.
Control Control GSM4216540 T cells Newcastle Early Arthritis Clinic number 2233 Disease control T cells Patient: 2233; Gender: F; Age: 58; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Other Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216541 T cells Newcastle Early Arthritis Clinic number 2148 Disease control T cells Patient: 2148; Gender: M; Age: 60; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Reactive Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216543 T cells Newcastle Early Arthritis Clinic number 813 Disease control T cells Patient: 813; Gender: F; Age: 50; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Undifferentiated Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216544 T cells Newcastle Early Arthritis Clinic number 814 Disease control T cells Patient: 814; Gender: F; Age: 31; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216545 T cells Newcastle Early Arthritis Clinic number 815 Disease control T cells Patient: 815; Gender: F; Age: 70; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216546 T cells Newcastle Early Arthritis Clinic number 826 Disease control T cells Patient: 826; Gender: F; Age: 52; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Osteoarthritis Sample-local control marker detected.
Control Control GSM4216547 T cells Newcastle Early Arthritis Clinic number 1037 Disease control T cells Patient: 1037; Gender: M; Age: 65; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216554 T cells Newcastle Early Arthritis Clinic number 841 Disease control T cells Patient: 841; Gender: M; Age: 22; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216556 T cells Newcastle Early Arthritis Clinic number 842 Disease control T cells Patient: 842; Gender: F; Age: 52; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Enteropathic Arthritis; Working_diagnosis: Enteropathic Arthritis Sample-local control marker detected.
Control Control GSM4216557 T cells Newcastle Early Arthritis Clinic number 2257 Disease control T cells Patient: 2257; Gender: F; Age: 35; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216558 T cells Newcastle Early Arthritis Clinic number 2261 Disease control T cells Patient: 2261; Gender: M; Age: 69; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Crystal Arthritis; Working_diagnosis: Crystal Arthritis Sample-local control marker detected.
Control Control GSM4216559 T cells Newcastle Early Arthritis Clinic number 2264 Disease control T cells Patient: 2264; Gender: F; Age: 70; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Enteropathic Arthritis; Working_diagnosis: Enteropathic Arthritis Sample-local control marker detected.
Control Control GSM4216560 T cells Newcastle Early Arthritis Clinic number 878 Disease control T cells Patient: 878; Gender: F; Age: 74; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216561 T cells Newcastle Early Arthritis Clinic number 969 Disease control T cells Patient: 969; Gender: F; Age: 38; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
Control Control GSM4216562 T cells Newcastle Early Arthritis Clinic number 829 Disease control T cells Patient: 829; Gender: F; Age: 80; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Other Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216563 T cells Newcastle Early Arthritis Clinic number 809 Disease control T cells Patient: 809; Gender: F; Age: 51; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Other Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216568 T cells Newcastle Early Arthritis Clinic number 954 Disease control T cells Patient: 954; Gender: F; Age: 45; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216569 T cells Newcastle Early Arthritis Clinic number 962 Disease control T cells Patient: 962; Gender: M; Age: 65; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Psoriatic Arthritis; Working_diagnosis: Psoriatic Arthritis Sample-local control marker detected.
Control Control GSM4216570 T cells Newcastle Early Arthritis Clinic number 1022 Disease control T cells Patient: 1022; Gender: F; Age: 53; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Spondylo-Arthropathy; Working_diagnosis: Undifferentiated Spondylo-Arthropathy Sample-local control marker detected.
Control Control GSM4216571 T cells Newcastle Early Arthritis Clinic number 965 Disease control T cells Patient: 965; Gender: M; Age: 57; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Osteoarthritis Sample-local control marker detected.
Control Control GSM4216575 T cells Newcastle Early Arthritis Clinic number 845 Disease control T cells Patient: 845; Gender: F; Age: 67; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Other Inflammatory Arthritis; Working_diagnosis: Other Inflammatory Arthritis Sample-local control marker detected.
Control Control GSM4216578 T cells Newcastle Early Arthritis Clinic number 898 Disease control T cells Patient: 898; Gender: F; Age: 54; Tissue: Peripheral blood; Cell type: CD4+ T cells; First_diagnosis: Undifferentiated Inflammatory Arthritis; Working_diagnosis: Reactive Arthritis Sample-local control marker detected.
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