GSE142255

Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF)

Whole-study status Exploratory only

Dataset can inform exploration but is not strong enough for primary analysis.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 46 samples
Specimen: Biofluid
Reported/interpreted study design: Patient biofluid vs healthy control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Moreau R, Weiss E, de la Grange P
Contact name: Pierre de la Grange
Submission date: 2019-12-18
Last update: 2021-02-24
Organization: GenoSplice technology
Department: Paris Biotech Santé
Public date: 2021-02-24
Experiment types: Expression profiling by array
Platforms: GPL17586 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
Series type: SubSeries
SubSeries: Not available
BioProject: PRJNA596432

Summary

Whole blood from 7 patients with stable cirrhosis, 7 patients with acutely decompensated cirrhosis without ACLF and 17 patients with ACLF (8 related to sepsis and 9 unrelated to sepsis) was sampled into tempus tubes (Applied biosystems, Ambion). The same method was used to sample whole blood from 7 healthy subjects and from 8 patients with septic shock without cirrhosis that were used as comparators.RNA was then extracted using the PerfectPure RNA blood kit (3 PRIME) according to manufactuter instructions. 100 ng of RNA per sample were then hybridized on Human Transcriptome Array 2.0

Overall design

Prospective trial comparing whole blood transcriptome of different group of patients according to the existance of chronic liver disease and to its severity

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 46 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 4 linked publications 4 DOIs Primary publication Characterization of Blood Immune Cells in Patients With Decompensated Cirrhosis Including ACLF. Frontiers in immunology, 2020 PubMed DOI Related publications Bioinformatics analyses of potential ACLF biological mechanisms and identification of immune-related hub genes and vital miRNAs. Scientific reports, 2022 PubMed DOI CD3D and CD247 are the molecular targets of septic shock. Medicine, 2023 PubMed DOI Identification and validation of neutrophil-related biomarkers in acute-on-chronic liver failure. Frontiers in immunology, 2025 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Exploratory only Dataset can inform exploration but is not strong enough for primary analysis.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Sepsis, septic shock Disease context came from Normalization rules.
Likely case group Patient with stable cirrhosis 39 samples
Likely control group Healthy control 7 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Patient biofluid vs healthy control. Specimen: Biofluid. Comparison suitability: 20%.
Interpreted disease metadata: Sepsis, Septic shock.
Processed data is available for downstream review.
External evidence: PubMed links 4 publications; 4 DOIs available: PMID 33613548, PMID 35982134, PMID 37478215, PMID 40070835.
Publication context: Characterization of Blood Immune Cells in Patients With Decompensated Cirrhosis Including ACLF.. Frontiers in immunology, 2020. PMID 33613548. DOI 10.3389/fimmu.2020.619039.
Publication context: Bioinformatics analyses of potential ACLF biological mechanisms and identification of immune-related hub genes and vital miRNAs.. Scientific reports, 2022. PMID 35982134. DOI 10.1038/s41598-022-18396-1.
Publication context: CD3D and CD247 are the molecular targets of septic shock.. Medicine, 2023. PMID 37478215. DOI 10.1097/MD.0000000000034295.
Publication context: 1 additional linked PubMed publications are available.

Cautions

Downgraded for tissue search because it is a biofluid cohort.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

144 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type microarray GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... keyword match keyword match: microarray

control_type healthy control GSM4223774 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T2 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223775 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T3 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223776 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T4 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223777 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T5 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223778 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T6 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223779 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T7 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM4223780 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T8 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary control type match: healthy control

disease sepsis GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... controlled vocabulary controlled vocabulary disease match: sepsis

disease septic shock GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... controlled vocabulary controlled vocabulary disease match: septic shock

disease sepsis GSM4223795 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P1 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223796 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P2 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223797 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P3 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223798 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P4 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223799 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P6 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223800 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P12 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223801 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P19 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223802 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P24 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223803 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P9 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223804 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P14 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223805 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P15 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223806 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P17 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P30 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223808 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P32 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223809 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P104 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223810 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P109 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease sepsis GSM4223811 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence sepsis P112 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary disease match: sepsis

disease septic shock GSM4223812 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P5 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223813 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P7 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223814 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P8 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223815 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P10 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223816 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P11 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223817 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P16 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223818 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P18 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

disease septic shock GSM4223819 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence septic shock P21 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary disease match: septic shock

normal_tissue_type healthy donor tissue GSM4223774 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T2 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223775 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T3 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223776 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T4 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223777 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T5 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223778 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T6 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223779 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T7 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM4223780 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T8 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... keyword match keyword match: homo sapiens

sample_type normal tissue GSM4223774 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T2 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223775 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T3 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223776 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T4 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223777 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T5 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223778 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T6 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223779 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T7 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM4223780 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control T8 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary sample type match: healthy control

specimen_material whole blood GSM4223774 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T2 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223775 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T3 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223776 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T4 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223777 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T5 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223778 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T6 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223779 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T7 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223780 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood T8 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223781 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P26 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223782 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P27 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223783 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P28 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223784 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P31 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223785 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P101 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223786 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P111 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223787 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P118 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223788 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P25 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223789 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P29 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223790 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P103 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223791 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P105 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223792 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P107 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223793 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P116 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223794 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P117 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223795 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P1 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223796 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P2 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223797 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P3 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223798 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P4 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223799 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P6 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223800 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P12 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223801 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P19 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223802 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P24 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223803 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P9 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223804 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P14 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223805 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P15 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223806 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P17 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223807 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P30 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223808 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P32 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223809 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P104 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223810 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P109 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223811 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P112 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223812 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P5 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223813 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P7 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223814 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P8 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223815 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P10 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223816 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P11 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223817 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P16 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223818 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P18 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

specimen_material whole blood GSM4223819 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence whole blood P21 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary specimen material match: whole blood

tissue blood GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... controlled vocabulary controlled vocabulary tissue match: blood

tissue liver GSE142255 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence liver dataset_accession: GSE142255 dataset_title: Gene expression profiling of immune cells from patients with acute on chronic liver failure (ACLF) organism: Homo sapiens assay_type:... controlled vocabulary controlled vocabulary tissue match: liver

tissue blood GSM4223774 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T2 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223775 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T3 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223776 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T4 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223777 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T5 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223778 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T6 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223779 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T7 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223780 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood T8 Healthy subject cell type: whole blood; stage of cirrhosis: No; ; disease state: Healthy control controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223781 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P26 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223782 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P27 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223783 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P28 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223784 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P31 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223785 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P101 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223786 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P111 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223787 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P118 Stable decompensated cirrhosis cell type: whole blood; stage of cirrhosis: Stable decompensated cirrhosis; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223788 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P25 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with stable cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223789 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P29 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223790 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P103 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223791 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P105 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223792 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P107 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223793 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P116 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223794 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P117 Acute decompensation cell type: whole blood; stage of cirrhosis: Acute decompensation; ; disease state: Patient with acutely decompensated cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223795 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P1 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223796 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P2 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223797 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P3 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223798 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P4 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223799 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P6 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223800 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P12 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223801 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P19 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223802 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P24 Sepsis-induced ACLF cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is related to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223803 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P9 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223804 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P14 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223805 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P15 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223806 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P17 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223807 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P30 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223808 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P32 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223809 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P104 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223810 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P109 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223811 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P112 ACLF unrelated to sepsis cell type: whole blood; stage of cirrhosis: ACLF; ; disease state: Patient with ACLF that is unrelated to sepsis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223812 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P5 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223813 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P7 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223814 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P8 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223815 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P10 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223816 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P11 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223817 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P16 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223818 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P18 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM4223819 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood P21 Septic shock W/O cirrhosis cell type: whole blood; stage of cirrhosis: No; ; disease state: Patient with a septic shock but without cirrhosis controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

46 rows shown Show Hide

Study totals: Case 39 | Control 7 | Unassigned 0 | Excluded 0 | Ambiguous 0 46 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Patient with stable cirrhosis	Case	GSM4223781	P26	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223782	P27	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223783	P28	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223784	P31	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223785	P101	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223786	P111	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223787	P118	Stable decompensated cirrhosis Cell type: Whole blood; Stage of cirrhosis: Stable decompensated cirrhosis; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with stable cirrhosis	Case	GSM4223788	P25	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with stable cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223789	P29	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223790	P103	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223791	P105	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223792	P107	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223793	P116	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Patient with acutely decompensated cirrhosis	Case	GSM4223794	P117	Acute decompensation Cell type: Whole blood; Stage of cirrhosis: Acute decompensation; Sepsis: No; Disease state: Patient with acutely decompensated cirrhosis	Explicit characteristic comparison arm detected.
Sepsis or systemic inflammatory response	Case	GSM4223795	P1	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223796	P2	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223797	P3	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223798	P4	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223799	P6	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223800	P12	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223801	P19	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223802	P24	Sepsis-induced ACLF Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: Yes; Disease state: Patient with ACLF that is related to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223803	P9	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223804	P14	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223805	P15	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223806	P17	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223807	P30	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223808	P32	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223809	P104	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223810	P109	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223811	P112	ACLF unrelated to sepsis Cell type: Whole blood; Stage of cirrhosis: ACLF; Sepsis: No; Disease state: Patient with ACLF that is unrelated to sepsis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223812	P5	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223813	P7	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223814	P8	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223815	P10	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223816	P11	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223817	P16	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223818	P18	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Sepsis or systemic inflammatory response	Case	GSM4223819	P21	Septic shock W/O cirrhosis Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: Yes; Disease state: Patient with a septic shock but without cirrhosis	Explicit sample label case marker detected.
Healthy control	Control	GSM4223774	T2	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223775	T3	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223776	T4	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223777	T5	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223778	T6	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223779	T7	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.
Healthy control	Control	GSM4223780	T8	Healthy subject Cell type: Whole blood; Stage of cirrhosis: No; Sepsis: No; Disease state: Healthy control	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort