Matching samples

GSE142607 · Metabolism in synovial macrophages are reprogrammed by synovial fibroblasts under inflammatory condition

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

6 case / 3 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (9)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM4232802

Uncertain

CAIA mice, SM rep1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
          • Supported by the indexed evidence.
          • specimen category excludes: Biofluid — Meets requirement
            • Supported by the indexed evidence.
            Source metadata
            Source name
            Primary synovial macrophages
            Characteristics
            strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1
            Description
            Not reported
            Indexed organism evidence
            INFERRED · PARENT_INHERITED: Not reported
            Indexed assay evidence
            INFERRED · PARENT_INHERITED: Not reported
            Source
            GEO
            Original indexed metadata
            sample_accession: GSM4232802
sample_title: CAIA mice, SM rep1
source_name: Primary synovial macrophages
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1

            GSM4232803

            Uncertain

            CAIA mice, SM rep2

            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

            Requirements and decision evidence
            • organism: Homo sapiens — Insufficient evidence
              • The required value is not reported.
              • assay type: bulk RNA-seq — Insufficient evidence
                • The required value is not reported.
                • specimen category: Tissue or biopsy — Insufficient evidence
                  • The required value is not reported.
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Meets requirement
                      • Supported by the indexed evidence.
                      Source metadata
                      Source name
                      Primary synovial macrophages
                      Characteristics
                      strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM4232803
sample_title: CAIA mice, SM rep2
source_name: Primary synovial macrophages
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1

                      GSM4232804

                      Uncertain

                      CAIA mice, SM rep3

                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Insufficient evidence
                            • The required value is not reported.
                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                              • Supported by the indexed evidence.
                              • specimen category excludes: Biofluid — Meets requirement
                                • Supported by the indexed evidence.
                                Source metadata
                                Source name
                                Primary synovial macrophages
                                Characteristics
                                strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM4232804
sample_title: CAIA mice, SM rep3
source_name: Primary synovial macrophages
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: macrophages derived from CAIA ankle tissue; passage: 1

                                GSM4232805

                                Uncertain

                                CAIA mice, SF rep1

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                        • Supported by the indexed evidence.
                                        • specimen category excludes: Biofluid — Meets requirement
                                          • Supported by the indexed evidence.
                                          Source metadata
                                          Source name
                                          Primary synovial fibroblasts
                                          Characteristics
                                          strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM4232805
sample_title: CAIA mice, SF rep1
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1

                                          GSM4232806

                                          Uncertain

                                          CAIA mice, SF rep2

                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                • The required value is not reported.
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Meets requirement
                                                    • Supported by the indexed evidence.
                                                    Source metadata
                                                    Source name
                                                    Primary synovial fibroblasts
                                                    Characteristics
                                                    strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1
                                                    Description
                                                    Not reported
                                                    Indexed organism evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Indexed assay evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Source
                                                    GEO
                                                    Original indexed metadata
                                                    sample_accession: GSM4232806
sample_title: CAIA mice, SF rep2
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1

                                                    GSM4232807

                                                    Uncertain

                                                    CAIA mice, SF rep3

                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                    Requirements and decision evidence
                                                    • organism: Homo sapiens — Insufficient evidence
                                                      • The required value is not reported.
                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                        • The required value is not reported.
                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                          • The required value is not reported.
                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                            • Supported by the indexed evidence.
                                                            • specimen category excludes: Biofluid — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              Source metadata
                                                              Source name
                                                              Primary synovial fibroblasts
                                                              Characteristics
                                                              strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM4232807
sample_title: CAIA mice, SF rep3
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: Collagen Antibody Induced Arthritis (CAIA) model for Rheumatoid Arthritis; cell type: fibroblasts derived from CAIA ankle tissue; passage: 1

                                                              GSM4785646

                                                              Uncertain

                                                              Normal 1

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                      • Supported by the indexed evidence.
                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                        • Supported by the indexed evidence.
                                                                        Source metadata
                                                                        Source name
                                                                        Primary synovial fibroblasts
                                                                        Characteristics
                                                                        strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1
                                                                        Description
                                                                        Not reported
                                                                        Indexed organism evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Indexed assay evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Source
                                                                        GEO
                                                                        Original indexed metadata
                                                                        sample_accession: GSM4785646
sample_title: Normal 1
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1

                                                                        GSM4785647

                                                                        Uncertain

                                                                        Normal 2

                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                        Requirements and decision evidence
                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                  • Supported by the indexed evidence.
                                                                                  Source metadata
                                                                                  Source name
                                                                                  Primary synovial fibroblasts
                                                                                  Characteristics
                                                                                  strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1
                                                                                  Description
                                                                                  Not reported
                                                                                  Indexed organism evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Indexed assay evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Source
                                                                                  GEO
                                                                                  Original indexed metadata
                                                                                  sample_accession: GSM4785647
sample_title: Normal 2
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1

                                                                                  GSM4785648

                                                                                  Uncertain

                                                                                  Normal 3

                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                  Requirements and decision evidence
                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                          • Supported by the indexed evidence.
                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Primary synovial fibroblasts
                                                                                            Characteristics
                                                                                            strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM4785648
sample_title: Normal 3
source_name: Primary synovial fibroblasts
characteristics: strain: C57BL/6; disease state: normal; cell type: fibroblasts derived from normal ankle tissue; passage: 1

                                                                                            Excluded samples (0)

                                                                                            No excluded samples.