Matching samples

GSE14580 · Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

24 case / 6 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (30)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM364627

Uncertain

CO1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
        • CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
          • CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
        Source metadata
        Source name
        Colonic mucosal biopsy from control individual
        Characteristics
        tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM364627
        sample_title: CO1
        source_name: Colonic mucosal biopsy from control individual
        characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

        GSM364628

        Uncertain

        CO2

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
              • CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                • CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
              Source metadata
              Source name
              Colonic mucosal biopsy from control individual
              Characteristics
              tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM364628
              sample_title: CO2
              source_name: Colonic mucosal biopsy from control individual
              characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

              GSM364629

              Uncertain

              CO3

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                    • CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                      • CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                    Source metadata
                    Source name
                    Colonic mucosal biopsy from control individual
                    Characteristics
                    tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM364629
                    sample_title: CO3
                    source_name: Colonic mucosal biopsy from control individual
                    characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

                    GSM364630

                    Uncertain

                    CO4

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                          • CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                            • CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                          Source metadata
                          Source name
                          Colonic mucosal biopsy from control individual
                          Characteristics
                          tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM364630
                          sample_title: CO4
                          source_name: Colonic mucosal biopsy from control individual
                          characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

                          GSM364631

                          Uncertain

                          CO5

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                • CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                  • CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                Source metadata
                                Source name
                                Colonic mucosal biopsy from control individual
                                Characteristics
                                tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM364631
                                sample_title: CO5
                                source_name: Colonic mucosal biopsy from control individual
                                characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

                                GSM364632

                                Uncertain

                                CO6

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                      • CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                        • CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
                                      Source metadata
                                      Source name
                                      Colonic mucosal biopsy from control individual
                                      Characteristics
                                      tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM364632
                                      sample_title: CO6
                                      source_name: Colonic mucosal biopsy from control individual
                                      characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable

                                      GSM364633

                                      Uncertain

                                      UCR1_beforeT

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                            • UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                              • UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                            Source metadata
                                            Source name
                                            Colonic mucosal biopsy from UC responder before first infliximab treatment
                                            Characteristics
                                            tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM364633
                                            sample_title: UCR1_beforeT
                                            source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                            characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                            GSM364634

                                            Uncertain

                                            UCR2_beforeT

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                  • UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                    • UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                  Source metadata
                                                  Source name
                                                  Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                  Characteristics
                                                  tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM364634
                                                  sample_title: UCR2_beforeT
                                                  source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                  characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                  GSM364635

                                                  Uncertain

                                                  UCR3_beforeT

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                        • UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                          • UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                        Source metadata
                                                        Source name
                                                        Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                        Characteristics
                                                        tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM364635
                                                        sample_title: UCR3_beforeT
                                                        source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                        characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                        GSM364636

                                                        Uncertain

                                                        UCR4_beforeT

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                              • UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                • UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                              Source metadata
                                                              Source name
                                                              Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                              Characteristics
                                                              tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM364636
                                                              sample_title: UCR4_beforeT
                                                              source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                              characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                              GSM364637

                                                              Uncertain

                                                              UCR5_beforeT

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                    • UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                      • UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                    Source metadata
                                                                    Source name
                                                                    Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                    Characteristics
                                                                    tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM364637
                                                                    sample_title: UCR5_beforeT
                                                                    source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                    characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                                    GSM364638

                                                                    Uncertain

                                                                    UCR6_beforeT

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                          • UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                            • UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                          Source metadata
                                                                          Source name
                                                                          Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                          Characteristics
                                                                          tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM364638
                                                                          sample_title: UCR6_beforeT
                                                                          source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                          characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                                          GSM364639

                                                                          Uncertain

                                                                          UCR7_beforeT

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                • UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                  • UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                Source metadata
                                                                                Source name
                                                                                Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                                Characteristics
                                                                                tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM364639
                                                                                sample_title: UCR7_beforeT
                                                                                source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                                characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                                                GSM364640

                                                                                Uncertain

                                                                                UCR8_beforeT

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                      • UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                        • UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                                      Characteristics
                                                                                      tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM364640
                                                                                      sample_title: UCR8_beforeT
                                                                                      source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
                                                                                      characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment

                                                                                      GSM364641

                                                                                      Uncertain

                                                                                      UCNR1_beforeT

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                            • UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                              • UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                            Characteristics
                                                                                            tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM364641
                                                                                            sample_title: UCNR1_beforeT
                                                                                            source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                            characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                            GSM364642

                                                                                            Uncertain

                                                                                            UCNR2_beforeT

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                  • UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                    • UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                  Characteristics
                                                                                                  tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM364642
                                                                                                  sample_title: UCNR2_beforeT
                                                                                                  source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                  characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                  GSM364643

                                                                                                  Uncertain

                                                                                                  UCNR3_beforeT

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                        • UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                          • UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                        Characteristics
                                                                                                        tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM364643
                                                                                                        sample_title: UCNR3_beforeT
                                                                                                        source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                        characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                        GSM364644

                                                                                                        Uncertain

                                                                                                        UCNR4_beforeT

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                              • UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                • UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                              Characteristics
                                                                                                              tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM364644
                                                                                                              sample_title: UCNR4_beforeT
                                                                                                              source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                              characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                              GSM364645

                                                                                                              Uncertain

                                                                                                              UCNR5_beforeT

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                    • UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                      • UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                    Characteristics
                                                                                                                    tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM364645
                                                                                                                    sample_title: UCNR5_beforeT
                                                                                                                    source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                    characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                    GSM364646

                                                                                                                    Uncertain

                                                                                                                    UCNR6_beforeT

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                          • UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                            • UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                          Characteristics
                                                                                                                          tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM364646
                                                                                                                          sample_title: UCNR6_beforeT
                                                                                                                          source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                          characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                          GSM364647

                                                                                                                          Uncertain

                                                                                                                          UCNR7_beforeT

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                • UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                  • UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                Characteristics
                                                                                                                                tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM364647
                                                                                                                                sample_title: UCNR7_beforeT
                                                                                                                                source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                GSM364648

                                                                                                                                Uncertain

                                                                                                                                UCNR8_beforeT

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                      • UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                        • UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                      Characteristics
                                                                                                                                      tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM364648
                                                                                                                                      sample_title: UCNR8_beforeT
                                                                                                                                      source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                      characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                      GSM364649

                                                                                                                                      Uncertain

                                                                                                                                      UCNR9_beforeT

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                            • UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                              • UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                            Characteristics
                                                                                                                                            tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM364649
                                                                                                                                            sample_title: UCNR9_beforeT
                                                                                                                                            source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                            characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                            GSM364650

                                                                                                                                            Uncertain

                                                                                                                                            UCNR10_beforeT

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                  • UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                    • UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                  Characteristics
                                                                                                                                                  tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM364650
                                                                                                                                                  sample_title: UCNR10_beforeT
                                                                                                                                                  source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                  characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                  GSM364651

                                                                                                                                                  Uncertain

                                                                                                                                                  UCNR11_beforeT

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                        • UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                          • UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                        Characteristics
                                                                                                                                                        tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM364651
                                                                                                                                                        sample_title: UCNR11_beforeT
                                                                                                                                                        source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                        characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                        GSM364652

                                                                                                                                                        Uncertain

                                                                                                                                                        UCNR12_beforeT

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                              • UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                • UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                              Characteristics
                                                                                                                                                              tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM364652
                                                                                                                                                              sample_title: UCNR12_beforeT
                                                                                                                                                              source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                              characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                              GSM364653

                                                                                                                                                              Uncertain

                                                                                                                                                              UCNR13_beforeT

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                    • UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                      • UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                    Characteristics
                                                                                                                                                                    tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM364653
                                                                                                                                                                    sample_title: UCNR13_beforeT
                                                                                                                                                                    source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                    characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                                    GSM364654

                                                                                                                                                                    Uncertain

                                                                                                                                                                    UCNR14_beforeT

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                          • UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                            • UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                          Source metadata
                                                                                                                                                                          Source name
                                                                                                                                                                          Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                          Characteristics
                                                                                                                                                                          tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                                          Description
                                                                                                                                                                          Not reported
                                                                                                                                                                          Indexed organism evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Indexed assay evidence
                                                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                          Source
                                                                                                                                                                          GEO
                                                                                                                                                                          Original indexed metadata
                                                                                                                                                                          sample_accession: GSM364654
                                                                                                                                                                          sample_title: UCNR14_beforeT
                                                                                                                                                                          source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                          characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                                          GSM364655

                                                                                                                                                                          Uncertain

                                                                                                                                                                          UCNR15_beforeT

                                                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                          Requirements and decision evidence
                                                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                • UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                  • UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                                Characteristics
                                                                                                                                                                                tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM364655
                                                                                                                                                                                sample_title: UCNR15_beforeT
                                                                                                                                                                                source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                                characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                                                GSM364656

                                                                                                                                                                                Uncertain

                                                                                                                                                                                UCNR16_beforeT

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                      • UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                        • UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
                                                                                                                                                                                      Source metadata
                                                                                                                                                                                      Source name
                                                                                                                                                                                      Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                                      Characteristics
                                                                                                                                                                                      tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
                                                                                                                                                                                      Description
                                                                                                                                                                                      Not reported
                                                                                                                                                                                      Indexed organism evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Indexed assay evidence
                                                                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                      Source
                                                                                                                                                                                      GEO
                                                                                                                                                                                      Original indexed metadata
                                                                                                                                                                                      sample_accession: GSM364656
                                                                                                                                                                                      sample_title: UCNR16_beforeT
                                                                                                                                                                                      source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
                                                                                                                                                                                      characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment

                                                                                                                                                                                      Excluded samples (0)

                                                                                                                                                                                      No excluded samples.