These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
CO1
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO1 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364627
sample_title: CO1
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
CO2
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO2 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364628
sample_title: CO2
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
CO3
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO3 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364629
sample_title: CO3
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
CO4
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO4 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364630
sample_title: CO4
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
CO5
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO5 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364631
sample_title: CO5
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
CO6
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
- CO6 Colonic mucosal biopsy from control individual tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not appli...
Source metadata
- Source name
- Colonic mucosal biopsy from control individual
- Characteristics
- tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364632
sample_title: CO6
source_name: Colonic mucosal biopsy from control individual
characteristics: tissue: Colon; disease: Control; response to infliximab: Not applicable; before or after first infliximab treatment: Not applicable
UCR1_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR1_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364633
sample_title: UCR1_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR2_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR2_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364634
sample_title: UCR2_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR3_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR3_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364635
sample_title: UCR3_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR4_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR4_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364636
sample_title: UCR4_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR5_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR5_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364637
sample_title: UCR5_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR6_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR6_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364638
sample_title: UCR6_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR7_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR7_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364639
sample_title: UCR7_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCR8_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
- UCR8_beforeT Colonic mucosal biopsy from UC responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab...
Source metadata
- Source name
- Colonic mucosal biopsy from UC responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364640
sample_title: UCR8_beforeT
source_name: Colonic mucosal biopsy from UC responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: Yes; before or after first infliximab treatment: Before first infliximab treatment
UCNR1_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR1_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364641
sample_title: UCNR1_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR2_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR2_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364642
sample_title: UCNR2_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR3_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR3_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364643
sample_title: UCNR3_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR4_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR4_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364644
sample_title: UCNR4_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR5_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR5_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364645
sample_title: UCNR5_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR6_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR6_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364646
sample_title: UCNR6_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR7_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR7_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364647
sample_title: UCNR7_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR8_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR8_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364648
sample_title: UCNR8_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR9_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
- UCNR9_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first inflix...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364649
sample_title: UCNR9_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR10_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR10_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364650
sample_title: UCNR10_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR11_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR11_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364651
sample_title: UCNR11_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR12_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR12_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364652
sample_title: UCNR12_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR13_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR13_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364653
sample_title: UCNR13_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR14_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR14_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364654
sample_title: UCNR14_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR15_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR15_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364655
sample_title: UCNR15_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
UCNR16_beforeT
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
- UCNR16_beforeT Colonic mucosal biopsy from UC non-responder before first infliximab treatment tissue: Colon; disease: UC; response to infliximab: No; before or after first infli...
Source metadata
- Source name
- Colonic mucosal biopsy from UC non-responder before first infliximab treatment
- Characteristics
- tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM364656
sample_title: UCNR16_beforeT
source_name: Colonic mucosal biopsy from UC non-responder before first infliximab treatment
characteristics: tissue: Colon; disease: UC; response to infliximab: No; before or after first infliximab treatment: Before first infliximab treatment