These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
Sample001 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample001 [Rectal biopsy] Rectal biopsy individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample001 [Rectal biopsy] Rectal biopsy individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample001 [Rectal biopsy] Rectal biopsy individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample001 [Rectal biopsy] Rectal biopsy individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562625
sample_title: Sample001 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind314; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample002 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample002 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample002 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample002 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample002 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562626
sample_title: Sample002 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample003 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample003 [Rectal biopsy] Rectal biopsy individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample003 [Rectal biopsy] Rectal biopsy individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample003 [Rectal biopsy] Rectal biopsy individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample003 [Rectal biopsy] Rectal biopsy individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562627
sample_title: Sample003 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind001; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample004 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample004 [Rectal biopsy] Rectal biopsy individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample004 [Rectal biopsy] Rectal biopsy individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample004 [Rectal biopsy] Rectal biopsy individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample004 [Rectal biopsy] Rectal biopsy individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562628
sample_title: Sample004 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind002; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample005 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample005 [Rectal biopsy] Rectal biopsy individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample005 [Rectal biopsy] Rectal biopsy individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample005 [Rectal biopsy] Rectal biopsy individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample005 [Rectal biopsy] Rectal biopsy individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562629
sample_title: Sample005 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind003; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample006 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample006 [Rectal biopsy] Rectal biopsy individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample006 [Rectal biopsy] Rectal biopsy individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample006 [Rectal biopsy] Rectal biopsy individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample006 [Rectal biopsy] Rectal biopsy individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562630
sample_title: Sample006 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind004; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample007 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample007 [Rectal biopsy] Rectal biopsy individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample007 [Rectal biopsy] Rectal biopsy individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample007 [Rectal biopsy] Rectal biopsy individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample007 [Rectal biopsy] Rectal biopsy individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562631
sample_title: Sample007 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind005; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample008 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample008 [Rectal biopsy] Rectal biopsy individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample008 [Rectal biopsy] Rectal biopsy individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample008 [Rectal biopsy] Rectal biopsy individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample008 [Rectal biopsy] Rectal biopsy individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562632
sample_title: Sample008 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind006; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample009 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample009 [Rectal biopsy] Rectal biopsy individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample009 [Rectal biopsy] Rectal biopsy individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample009 [Rectal biopsy] Rectal biopsy individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample009 [Rectal biopsy] Rectal biopsy individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562633
sample_title: Sample009 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind007; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
Sample010 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample010 [Rectal biopsy] Rectal biopsy individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample010 [Rectal biopsy] Rectal biopsy individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample010 [Rectal biopsy] Rectal biopsy individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample010 [Rectal biopsy] Rectal biopsy individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562634
sample_title: Sample010 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind008; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample011 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample011 [Rectal biopsy] Rectal biopsy individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample011 [Rectal biopsy] Rectal biopsy individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample011 [Rectal biopsy] Rectal biopsy individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample011 [Rectal biopsy] Rectal biopsy individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562635
sample_title: Sample011 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind009; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample012 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample012 [Rectal biopsy] Rectal biopsy individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample012 [Rectal biopsy] Rectal biopsy individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample012 [Rectal biopsy] Rectal biopsy individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample012 [Rectal biopsy] Rectal biopsy individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562636
sample_title: Sample012 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind010; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample013 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample013 [Rectal biopsy] Rectal biopsy individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample013 [Rectal biopsy] Rectal biopsy individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample013 [Rectal biopsy] Rectal biopsy individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample013 [Rectal biopsy] Rectal biopsy individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562637
sample_title: Sample013 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind011; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample014 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample014 [Rectal biopsy] Rectal biopsy individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample014 [Rectal biopsy] Rectal biopsy individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample014 [Rectal biopsy] Rectal biopsy individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample014 [Rectal biopsy] Rectal biopsy individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562638
sample_title: Sample014 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind012; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample015 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample015 [Rectal biopsy] Rectal biopsy individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample015 [Rectal biopsy] Rectal biopsy individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample015 [Rectal biopsy] Rectal biopsy individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample015 [Rectal biopsy] Rectal biopsy individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562639
sample_title: Sample015 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind013; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample016 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample016 [Rectal biopsy] Rectal biopsy individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample016 [Rectal biopsy] Rectal biopsy individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample016 [Rectal biopsy] Rectal biopsy individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample016 [Rectal biopsy] Rectal biopsy individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562640
sample_title: Sample016 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind014; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample017 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample017 [Rectal biopsy] Rectal biopsy individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample017 [Rectal biopsy] Rectal biopsy individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample017 [Rectal biopsy] Rectal biopsy individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample017 [Rectal biopsy] Rectal biopsy individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562641
sample_title: Sample017 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind015; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample018 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample018 [Rectal biopsy] Rectal biopsy individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample018 [Rectal biopsy] Rectal biopsy individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample018 [Rectal biopsy] Rectal biopsy individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample018 [Rectal biopsy] Rectal biopsy individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562642
sample_title: Sample018 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind016; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample019 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample019 [Rectal biopsy] Rectal biopsy individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample019 [Rectal biopsy] Rectal biopsy individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample019 [Rectal biopsy] Rectal biopsy individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample019 [Rectal biopsy] Rectal biopsy individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562643
sample_title: Sample019 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind017; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample020 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample020 [Rectal biopsy] Rectal biopsy individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample020 [Rectal biopsy] Rectal biopsy individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample020 [Rectal biopsy] Rectal biopsy individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample020 [Rectal biopsy] Rectal biopsy individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562644
sample_title: Sample020 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind018; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample021 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample021 [Rectal biopsy] Rectal biopsy individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample021 [Rectal biopsy] Rectal biopsy individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample021 [Rectal biopsy] Rectal biopsy individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample021 [Rectal biopsy] Rectal biopsy individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562645
sample_title: Sample021 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind019; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample022 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample022 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample022 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample022 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample022 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562646
sample_title: Sample022 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample023 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample023 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample023 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample023 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample023 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562647
sample_title: Sample023 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample024 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample024 [Rectal biopsy] Rectal biopsy individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample024 [Rectal biopsy] Rectal biopsy individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample024 [Rectal biopsy] Rectal biopsy individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample024 [Rectal biopsy] Rectal biopsy individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562648
sample_title: Sample024 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind020; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample025 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample025 [Rectal biopsy] Rectal biopsy individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample025 [Rectal biopsy] Rectal biopsy individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample025 [Rectal biopsy] Rectal biopsy individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample025 [Rectal biopsy] Rectal biopsy individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562649
sample_title: Sample025 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind021; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample026 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample026 [Rectal biopsy] Rectal biopsy individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample026 [Rectal biopsy] Rectal biopsy individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample026 [Rectal biopsy] Rectal biopsy individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample026 [Rectal biopsy] Rectal biopsy individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562650
sample_title: Sample026 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind022; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample027 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample027 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample027 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample027 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample027 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562651
sample_title: Sample027 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample028 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample028 [Rectal biopsy] Rectal biopsy individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample028 [Rectal biopsy] Rectal biopsy individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample028 [Rectal biopsy] Rectal biopsy individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample028 [Rectal biopsy] Rectal biopsy individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562652
sample_title: Sample028 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind023; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample029 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample029 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample029 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample029 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample029 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562653
sample_title: Sample029 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample030 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample030 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample030 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample030 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample030 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562654
sample_title: Sample030 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample031 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample031 [Rectal biopsy] Rectal biopsy individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample031 [Rectal biopsy] Rectal biopsy individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample031 [Rectal biopsy] Rectal biopsy individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample031 [Rectal biopsy] Rectal biopsy individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562655
sample_title: Sample031 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind024; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample032 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample032 [Rectal biopsy] Rectal biopsy individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample032 [Rectal biopsy] Rectal biopsy individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample032 [Rectal biopsy] Rectal biopsy individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample032 [Rectal biopsy] Rectal biopsy individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562656
sample_title: Sample032 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind025; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample033 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample033 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample033 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample033 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample033 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562657
sample_title: Sample033 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample034 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample034 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample034 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample034 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample034 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562658
sample_title: Sample034 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample035 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample035 [Rectal biopsy] Rectal biopsy individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample035 [Rectal biopsy] Rectal biopsy individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample035 [Rectal biopsy] Rectal biopsy individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample035 [Rectal biopsy] Rectal biopsy individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562659
sample_title: Sample035 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind026; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample036 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample036 [Rectal biopsy] Rectal biopsy individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample036 [Rectal biopsy] Rectal biopsy individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample036 [Rectal biopsy] Rectal biopsy individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample036 [Rectal biopsy] Rectal biopsy individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562660
sample_title: Sample036 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind027; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample037 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample037 [Rectal biopsy] Rectal biopsy individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample037 [Rectal biopsy] Rectal biopsy individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample037 [Rectal biopsy] Rectal biopsy individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample037 [Rectal biopsy] Rectal biopsy individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562661
sample_title: Sample037 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind028; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample038 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample038 [Rectal biopsy] Rectal biopsy individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample038 [Rectal biopsy] Rectal biopsy individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample038 [Rectal biopsy] Rectal biopsy individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample038 [Rectal biopsy] Rectal biopsy individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562662
sample_title: Sample038 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind029; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample039 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample039 [Rectal biopsy] Rectal biopsy individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample039 [Rectal biopsy] Rectal biopsy individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample039 [Rectal biopsy] Rectal biopsy individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample039 [Rectal biopsy] Rectal biopsy individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562663
sample_title: Sample039 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind030; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample040 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample040 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample040 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample040 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample040 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562664
sample_title: Sample040 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample041 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample041 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample041 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample041 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample041 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562665
sample_title: Sample041 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample042 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample042 [Rectal biopsy] Rectal biopsy individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample042 [Rectal biopsy] Rectal biopsy individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample042 [Rectal biopsy] Rectal biopsy individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample042 [Rectal biopsy] Rectal biopsy individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562666
sample_title: Sample042 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind031; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample043 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample043 [Rectal biopsy] Rectal biopsy individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample043 [Rectal biopsy] Rectal biopsy individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample043 [Rectal biopsy] Rectal biopsy individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample043 [Rectal biopsy] Rectal biopsy individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562667
sample_title: Sample043 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind032; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample044 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample044 [Rectal biopsy] Rectal biopsy individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample044 [Rectal biopsy] Rectal biopsy individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample044 [Rectal biopsy] Rectal biopsy individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample044 [Rectal biopsy] Rectal biopsy individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562668
sample_title: Sample044 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind033; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample045 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample045 [Rectal biopsy] Rectal biopsy individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample045 [Rectal biopsy] Rectal biopsy individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample045 [Rectal biopsy] Rectal biopsy individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample045 [Rectal biopsy] Rectal biopsy individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562669
sample_title: Sample045 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind034; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
Sample046 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample046 [Rectal biopsy] Rectal biopsy individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample046 [Rectal biopsy] Rectal biopsy individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample046 [Rectal biopsy] Rectal biopsy individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample046 [Rectal biopsy] Rectal biopsy individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562670
sample_title: Sample046 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind035; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample047 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample047 [Rectal biopsy] Rectal biopsy individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample047 [Rectal biopsy] Rectal biopsy individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample047 [Rectal biopsy] Rectal biopsy individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample047 [Rectal biopsy] Rectal biopsy individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562671
sample_title: Sample047 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind036; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample048 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample048 [Rectal biopsy] Rectal biopsy individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample048 [Rectal biopsy] Rectal biopsy individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample048 [Rectal biopsy] Rectal biopsy individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample048 [Rectal biopsy] Rectal biopsy individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562672
sample_title: Sample048 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind037; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample049 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample049 [Rectal biopsy] Rectal biopsy individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample049 [Rectal biopsy] Rectal biopsy individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample049 [Rectal biopsy] Rectal biopsy individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample049 [Rectal biopsy] Rectal biopsy individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562673
sample_title: Sample049 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind038; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample050 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample050 [Rectal biopsy] Rectal biopsy individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample050 [Rectal biopsy] Rectal biopsy individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample050 [Rectal biopsy] Rectal biopsy individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample050 [Rectal biopsy] Rectal biopsy individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562674
sample_title: Sample050 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind039; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample051 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample051 [Rectal biopsy] Rectal biopsy individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample051 [Rectal biopsy] Rectal biopsy individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample051 [Rectal biopsy] Rectal biopsy individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample051 [Rectal biopsy] Rectal biopsy individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562675
sample_title: Sample051 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind040; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample052 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample052 [Rectal biopsy] Rectal biopsy individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample052 [Rectal biopsy] Rectal biopsy individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample052 [Rectal biopsy] Rectal biopsy individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample052 [Rectal biopsy] Rectal biopsy individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562676
sample_title: Sample052 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind041; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample053 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample053 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample053 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample053 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample053 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562677
sample_title: Sample053 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample054 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample054 [Rectal biopsy] Rectal biopsy individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample054 [Rectal biopsy] Rectal biopsy individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample054 [Rectal biopsy] Rectal biopsy individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample054 [Rectal biopsy] Rectal biopsy individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562678
sample_title: Sample054 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind042; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample055 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample055 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample055 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample055 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample055 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562679
sample_title: Sample055 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample056 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample056 [Rectal biopsy] Rectal biopsy individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample056 [Rectal biopsy] Rectal biopsy individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample056 [Rectal biopsy] Rectal biopsy individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample056 [Rectal biopsy] Rectal biopsy individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562680
sample_title: Sample056 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind043; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample057 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample057 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample057 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample057 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample057 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562681
sample_title: Sample057 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample058 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample058 [Rectal biopsy] Rectal biopsy individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample058 [Rectal biopsy] Rectal biopsy individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample058 [Rectal biopsy] Rectal biopsy individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample058 [Rectal biopsy] Rectal biopsy individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562682
sample_title: Sample058 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind044; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample059 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample059 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample059 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample059 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample059 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562683
sample_title: Sample059 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample060 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample060 [Rectal biopsy] Rectal biopsy individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample060 [Rectal biopsy] Rectal biopsy individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample060 [Rectal biopsy] Rectal biopsy individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample060 [Rectal biopsy] Rectal biopsy individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562684
sample_title: Sample060 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind045; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample061 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample061 [Rectal biopsy] Rectal biopsy individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample061 [Rectal biopsy] Rectal biopsy individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample061 [Rectal biopsy] Rectal biopsy individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample061 [Rectal biopsy] Rectal biopsy individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562685
sample_title: Sample061 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind046; gender: M; age at diagnosis: 5; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample062 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample062 [Rectal biopsy] Rectal biopsy individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample062 [Rectal biopsy] Rectal biopsy individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample062 [Rectal biopsy] Rectal biopsy individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample062 [Rectal biopsy] Rectal biopsy individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562686
sample_title: Sample062 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind047; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample063 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample063 [Rectal biopsy] Rectal biopsy individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample063 [Rectal biopsy] Rectal biopsy individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample063 [Rectal biopsy] Rectal biopsy individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample063 [Rectal biopsy] Rectal biopsy individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562687
sample_title: Sample063 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind048; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample064 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample064 [Rectal biopsy] Rectal biopsy individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample064 [Rectal biopsy] Rectal biopsy individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample064 [Rectal biopsy] Rectal biopsy individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample064 [Rectal biopsy] Rectal biopsy individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562688
sample_title: Sample064 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind049; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample065 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample065 [Rectal biopsy] Rectal biopsy individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample065 [Rectal biopsy] Rectal biopsy individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample065 [Rectal biopsy] Rectal biopsy individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample065 [Rectal biopsy] Rectal biopsy individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562689
sample_title: Sample065 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind050; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample066 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample066 [Rectal biopsy] Rectal biopsy individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample066 [Rectal biopsy] Rectal biopsy individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample066 [Rectal biopsy] Rectal biopsy individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample066 [Rectal biopsy] Rectal biopsy individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562690
sample_title: Sample066 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind051; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample067 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample067 [Rectal biopsy] Rectal biopsy individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample067 [Rectal biopsy] Rectal biopsy individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample067 [Rectal biopsy] Rectal biopsy individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample067 [Rectal biopsy] Rectal biopsy individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562691
sample_title: Sample067 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind052; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample068 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample068 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample068 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample068 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample068 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562692
sample_title: Sample068 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample069 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample069 [Rectal biopsy] Rectal biopsy individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample069 [Rectal biopsy] Rectal biopsy individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample069 [Rectal biopsy] Rectal biopsy individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample069 [Rectal biopsy] Rectal biopsy individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562693
sample_title: Sample069 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind053; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample070 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample070 [Rectal biopsy] Rectal biopsy individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample070 [Rectal biopsy] Rectal biopsy individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample070 [Rectal biopsy] Rectal biopsy individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample070 [Rectal biopsy] Rectal biopsy individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562694
sample_title: Sample070 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind054; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample071 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample071 [Rectal biopsy] Rectal biopsy individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample071 [Rectal biopsy] Rectal biopsy individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample071 [Rectal biopsy] Rectal biopsy individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample071 [Rectal biopsy] Rectal biopsy individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562695
sample_title: Sample071 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind055; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample072 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample072 [Rectal biopsy] Rectal biopsy individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample072 [Rectal biopsy] Rectal biopsy individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample072 [Rectal biopsy] Rectal biopsy individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample072 [Rectal biopsy] Rectal biopsy individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562696
sample_title: Sample072 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind056; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample073 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample073 [Rectal biopsy] Rectal biopsy individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample073 [Rectal biopsy] Rectal biopsy individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample073 [Rectal biopsy] Rectal biopsy individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample073 [Rectal biopsy] Rectal biopsy individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562697
sample_title: Sample073 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind057; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample074 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample074 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample074 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample074 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample074 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562698
sample_title: Sample074 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample075 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample075 [Rectal biopsy] Rectal biopsy individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample075 [Rectal biopsy] Rectal biopsy individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample075 [Rectal biopsy] Rectal biopsy individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample075 [Rectal biopsy] Rectal biopsy individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562699
sample_title: Sample075 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind058; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample076 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample076 [Rectal biopsy] Rectal biopsy individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample076 [Rectal biopsy] Rectal biopsy individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample076 [Rectal biopsy] Rectal biopsy individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample076 [Rectal biopsy] Rectal biopsy individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562700
sample_title: Sample076 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind059; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample077 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample077 [Rectal biopsy] Rectal biopsy individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample077 [Rectal biopsy] Rectal biopsy individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample077 [Rectal biopsy] Rectal biopsy individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample077 [Rectal biopsy] Rectal biopsy individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562701
sample_title: Sample077 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind060; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample078 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample078 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample078 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample078 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample078 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562702
sample_title: Sample078 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample079 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample079 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample079 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample079 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample079 [Rectal biopsy] Rectal biopsy individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562703
sample_title: Sample079 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind316; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample080 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample080 [Rectal biopsy] Rectal biopsy individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample080 [Rectal biopsy] Rectal biopsy individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample080 [Rectal biopsy] Rectal biopsy individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample080 [Rectal biopsy] Rectal biopsy individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562704
sample_title: Sample080 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind061; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample081 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample081 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample081 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample081 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample081 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562705
sample_title: Sample081 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample082 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample082 [Rectal biopsy] Rectal biopsy individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample082 [Rectal biopsy] Rectal biopsy individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample082 [Rectal biopsy] Rectal biopsy individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample082 [Rectal biopsy] Rectal biopsy individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562706
sample_title: Sample082 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind062; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample083 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample083 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample083 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample083 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample083 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562707
sample_title: Sample083 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample084 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample084 [Rectal biopsy] Rectal biopsy individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample084 [Rectal biopsy] Rectal biopsy individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample084 [Rectal biopsy] Rectal biopsy individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample084 [Rectal biopsy] Rectal biopsy individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562708
sample_title: Sample084 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind063; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample085 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample085 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample085 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample085 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample085 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562709
sample_title: Sample085 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample086 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample086 [Rectal biopsy] Rectal biopsy individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample086 [Rectal biopsy] Rectal biopsy individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample086 [Rectal biopsy] Rectal biopsy individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample086 [Rectal biopsy] Rectal biopsy individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562710
sample_title: Sample086 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind064; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample087 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample087 [Rectal biopsy] Rectal biopsy individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample087 [Rectal biopsy] Rectal biopsy individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample087 [Rectal biopsy] Rectal biopsy individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample087 [Rectal biopsy] Rectal biopsy individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562711
sample_title: Sample087 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind065; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample088 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample088 [Rectal biopsy] Rectal biopsy individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample088 [Rectal biopsy] Rectal biopsy individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample088 [Rectal biopsy] Rectal biopsy individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample088 [Rectal biopsy] Rectal biopsy individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562712
sample_title: Sample088 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind066; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample089 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample089 [Rectal biopsy] Rectal biopsy individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample089 [Rectal biopsy] Rectal biopsy individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample089 [Rectal biopsy] Rectal biopsy individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample089 [Rectal biopsy] Rectal biopsy individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562713
sample_title: Sample089 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind067; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample090 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample090 [Rectal biopsy] Rectal biopsy individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample090 [Rectal biopsy] Rectal biopsy individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample090 [Rectal biopsy] Rectal biopsy individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample090 [Rectal biopsy] Rectal biopsy individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562714
sample_title: Sample090 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind068; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample091 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample091 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample091 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample091 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample091 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562715
sample_title: Sample091 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample092 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample092 [Rectal biopsy] Rectal biopsy individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample092 [Rectal biopsy] Rectal biopsy individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample092 [Rectal biopsy] Rectal biopsy individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample092 [Rectal biopsy] Rectal biopsy individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562716
sample_title: Sample092 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind069; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample093 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample093 [Rectal biopsy] Rectal biopsy individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample093 [Rectal biopsy] Rectal biopsy individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample093 [Rectal biopsy] Rectal biopsy individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample093 [Rectal biopsy] Rectal biopsy individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562717
sample_title: Sample093 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind070; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample094 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample094 [Rectal biopsy] Rectal biopsy individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample094 [Rectal biopsy] Rectal biopsy individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample094 [Rectal biopsy] Rectal biopsy individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample094 [Rectal biopsy] Rectal biopsy individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562718
sample_title: Sample094 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind071; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample095 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample095 [Rectal biopsy] Rectal biopsy individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample095 [Rectal biopsy] Rectal biopsy individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample095 [Rectal biopsy] Rectal biopsy individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample095 [Rectal biopsy] Rectal biopsy individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562719
sample_title: Sample095 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind072; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample096 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample096 [Rectal biopsy] Rectal biopsy individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample096 [Rectal biopsy] Rectal biopsy individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample096 [Rectal biopsy] Rectal biopsy individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample096 [Rectal biopsy] Rectal biopsy individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562720
sample_title: Sample096 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind073; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample097 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample097 [Rectal biopsy] Rectal biopsy individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample097 [Rectal biopsy] Rectal biopsy individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample097 [Rectal biopsy] Rectal biopsy individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample097 [Rectal biopsy] Rectal biopsy individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562721
sample_title: Sample097 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind074; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample098 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample098 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample098 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample098 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample098 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562722
sample_title: Sample098 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample099 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample099 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample099 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample099 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample099 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562723
sample_title: Sample099 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample100 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample100 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample100 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample100 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample100 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562724
sample_title: Sample100 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample101 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample101 [Rectal biopsy] Rectal biopsy individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample101 [Rectal biopsy] Rectal biopsy individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample101 [Rectal biopsy] Rectal biopsy individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample101 [Rectal biopsy] Rectal biopsy individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562725
sample_title: Sample101 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind075; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample102 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample102 [Rectal biopsy] Rectal biopsy individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample102 [Rectal biopsy] Rectal biopsy individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample102 [Rectal biopsy] Rectal biopsy individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample102 [Rectal biopsy] Rectal biopsy individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562726
sample_title: Sample102 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind076; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample103 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample103 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample103 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample103 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample103 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562727
sample_title: Sample103 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample104 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample104 [Rectal biopsy] Rectal biopsy individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample104 [Rectal biopsy] Rectal biopsy individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample104 [Rectal biopsy] Rectal biopsy individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample104 [Rectal biopsy] Rectal biopsy individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562728
sample_title: Sample104 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind077; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample105 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample105 [Rectal biopsy] Rectal biopsy individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample105 [Rectal biopsy] Rectal biopsy individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample105 [Rectal biopsy] Rectal biopsy individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample105 [Rectal biopsy] Rectal biopsy individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562729
sample_title: Sample105 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind078; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample106 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample106 [Rectal biopsy] Rectal biopsy individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample106 [Rectal biopsy] Rectal biopsy individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample106 [Rectal biopsy] Rectal biopsy individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample106 [Rectal biopsy] Rectal biopsy individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562730
sample_title: Sample106 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind079; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample107 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample107 [Rectal biopsy] Rectal biopsy individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample107 [Rectal biopsy] Rectal biopsy individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample107 [Rectal biopsy] Rectal biopsy individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample107 [Rectal biopsy] Rectal biopsy individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562731
sample_title: Sample107 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind080; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample109 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample109 [Rectal biopsy] Rectal biopsy individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample109 [Rectal biopsy] Rectal biopsy individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample109 [Rectal biopsy] Rectal biopsy individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample109 [Rectal biopsy] Rectal biopsy individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562732
sample_title: Sample109 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind082; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample110 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample110 [Rectal biopsy] Rectal biopsy individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample110 [Rectal biopsy] Rectal biopsy individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample110 [Rectal biopsy] Rectal biopsy individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample110 [Rectal biopsy] Rectal biopsy individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562733
sample_title: Sample110 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind083; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample111 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample111 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample111 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample111 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample111 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562734
sample_title: Sample111 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample112 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample112 [Rectal biopsy] Rectal biopsy individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample112 [Rectal biopsy] Rectal biopsy individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample112 [Rectal biopsy] Rectal biopsy individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample112 [Rectal biopsy] Rectal biopsy individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562735
sample_title: Sample112 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind084; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample113 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample113 [Rectal biopsy] Rectal biopsy individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample113 [Rectal biopsy] Rectal biopsy individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample113 [Rectal biopsy] Rectal biopsy individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample113 [Rectal biopsy] Rectal biopsy individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562736
sample_title: Sample113 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind085; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample114 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample114 [Rectal biopsy] Rectal biopsy individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample114 [Rectal biopsy] Rectal biopsy individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample114 [Rectal biopsy] Rectal biopsy individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample114 [Rectal biopsy] Rectal biopsy individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562737
sample_title: Sample114 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind086; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample115 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample115 [Rectal biopsy] Rectal biopsy individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample115 [Rectal biopsy] Rectal biopsy individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample115 [Rectal biopsy] Rectal biopsy individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample115 [Rectal biopsy] Rectal biopsy individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562738
sample_title: Sample115 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind087; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample116 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample116 [Rectal biopsy] Rectal biopsy individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample116 [Rectal biopsy] Rectal biopsy individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample116 [Rectal biopsy] Rectal biopsy individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample116 [Rectal biopsy] Rectal biopsy individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562739
sample_title: Sample116 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind088; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample117 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample117 [Rectal biopsy] Rectal biopsy individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample117 [Rectal biopsy] Rectal biopsy individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample117 [Rectal biopsy] Rectal biopsy individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample117 [Rectal biopsy] Rectal biopsy individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562740
sample_title: Sample117 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind089; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample118 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample118 [Rectal biopsy] Rectal biopsy individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample118 [Rectal biopsy] Rectal biopsy individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample118 [Rectal biopsy] Rectal biopsy individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample118 [Rectal biopsy] Rectal biopsy individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562741
sample_title: Sample118 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind090; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample119 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample119 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample119 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample119 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample119 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562742
sample_title: Sample119 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample120 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample120 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample120 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample120 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample120 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562743
sample_title: Sample120 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample121 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample121 [Rectal biopsy] Rectal biopsy individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample121 [Rectal biopsy] Rectal biopsy individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample121 [Rectal biopsy] Rectal biopsy individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample121 [Rectal biopsy] Rectal biopsy individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562744
sample_title: Sample121 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind091; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample122 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample122 [Rectal biopsy] Rectal biopsy individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample122 [Rectal biopsy] Rectal biopsy individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample122 [Rectal biopsy] Rectal biopsy individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample122 [Rectal biopsy] Rectal biopsy individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562745
sample_title: Sample122 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind092; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample123 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample123 [Rectal biopsy] Rectal biopsy individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample123 [Rectal biopsy] Rectal biopsy individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample123 [Rectal biopsy] Rectal biopsy individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample123 [Rectal biopsy] Rectal biopsy individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562746
sample_title: Sample123 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind093; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample124 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample124 [Rectal biopsy] Rectal biopsy individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample124 [Rectal biopsy] Rectal biopsy individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample124 [Rectal biopsy] Rectal biopsy individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample124 [Rectal biopsy] Rectal biopsy individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562747
sample_title: Sample124 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind094; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample125 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample125 [Rectal biopsy] Rectal biopsy individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample125 [Rectal biopsy] Rectal biopsy individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample125 [Rectal biopsy] Rectal biopsy individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample125 [Rectal biopsy] Rectal biopsy individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562748
sample_title: Sample125 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind095; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample126 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample126 [Rectal biopsy] Rectal biopsy individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample126 [Rectal biopsy] Rectal biopsy individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample126 [Rectal biopsy] Rectal biopsy individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample126 [Rectal biopsy] Rectal biopsy individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562749
sample_title: Sample126 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind096; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample127 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample127 [Rectal biopsy] Rectal biopsy individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample127 [Rectal biopsy] Rectal biopsy individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample127 [Rectal biopsy] Rectal biopsy individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample127 [Rectal biopsy] Rectal biopsy individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562750
sample_title: Sample127 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind097; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample128 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample128 [Rectal biopsy] Rectal biopsy individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample128 [Rectal biopsy] Rectal biopsy individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample128 [Rectal biopsy] Rectal biopsy individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample128 [Rectal biopsy] Rectal biopsy individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562751
sample_title: Sample128 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind098; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample129 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample129 [Rectal biopsy] Rectal biopsy individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample129 [Rectal biopsy] Rectal biopsy individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample129 [Rectal biopsy] Rectal biopsy individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample129 [Rectal biopsy] Rectal biopsy individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562752
sample_title: Sample129 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind099; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample130 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample130 [Rectal biopsy] Rectal biopsy individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample130 [Rectal biopsy] Rectal biopsy individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample130 [Rectal biopsy] Rectal biopsy individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample130 [Rectal biopsy] Rectal biopsy individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562753
sample_title: Sample130 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind100; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample131 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample131 [Rectal biopsy] Rectal biopsy individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample131 [Rectal biopsy] Rectal biopsy individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample131 [Rectal biopsy] Rectal biopsy individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample131 [Rectal biopsy] Rectal biopsy individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562754
sample_title: Sample131 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind101; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample132 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample132 [Rectal biopsy] Rectal biopsy individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample132 [Rectal biopsy] Rectal biopsy individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample132 [Rectal biopsy] Rectal biopsy individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample132 [Rectal biopsy] Rectal biopsy individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562755
sample_title: Sample132 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind102; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample133 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample133 [Rectal biopsy] Rectal biopsy individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample133 [Rectal biopsy] Rectal biopsy individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample133 [Rectal biopsy] Rectal biopsy individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample133 [Rectal biopsy] Rectal biopsy individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562756
sample_title: Sample133 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind103; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample134 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample134 [Rectal biopsy] Rectal biopsy individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample134 [Rectal biopsy] Rectal biopsy individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample134 [Rectal biopsy] Rectal biopsy individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample134 [Rectal biopsy] Rectal biopsy individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562757
sample_title: Sample134 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind104; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample135 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample135 [Rectal biopsy] Rectal biopsy individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample135 [Rectal biopsy] Rectal biopsy individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample135 [Rectal biopsy] Rectal biopsy individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample135 [Rectal biopsy] Rectal biopsy individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562758
sample_title: Sample135 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind105; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample136 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample136 [Rectal biopsy] Rectal biopsy individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample136 [Rectal biopsy] Rectal biopsy individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample136 [Rectal biopsy] Rectal biopsy individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample136 [Rectal biopsy] Rectal biopsy individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562759
sample_title: Sample136 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind106; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample137 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample137 [Rectal biopsy] Rectal biopsy individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample137 [Rectal biopsy] Rectal biopsy individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample137 [Rectal biopsy] Rectal biopsy individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample137 [Rectal biopsy] Rectal biopsy individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562760
sample_title: Sample137 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind107; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample138 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample138 [Rectal biopsy] Rectal biopsy individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample138 [Rectal biopsy] Rectal biopsy individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample138 [Rectal biopsy] Rectal biopsy individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample138 [Rectal biopsy] Rectal biopsy individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562761
sample_title: Sample138 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind108; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample139 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample139 [Rectal biopsy] Rectal biopsy individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample139 [Rectal biopsy] Rectal biopsy individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample139 [Rectal biopsy] Rectal biopsy individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample139 [Rectal biopsy] Rectal biopsy individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562762
sample_title: Sample139 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind109; gender: M; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample140 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample140 [Rectal biopsy] Rectal biopsy individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample140 [Rectal biopsy] Rectal biopsy individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample140 [Rectal biopsy] Rectal biopsy individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample140 [Rectal biopsy] Rectal biopsy individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562763
sample_title: Sample140 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind110; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample141 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample141 [Rectal biopsy] Rectal biopsy individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample141 [Rectal biopsy] Rectal biopsy individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample141 [Rectal biopsy] Rectal biopsy individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample141 [Rectal biopsy] Rectal biopsy individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562764
sample_title: Sample141 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind111; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample142 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample142 [Rectal biopsy] Rectal biopsy individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample142 [Rectal biopsy] Rectal biopsy individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample142 [Rectal biopsy] Rectal biopsy individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample142 [Rectal biopsy] Rectal biopsy individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562765
sample_title: Sample142 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind112; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample143 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample143 [Rectal biopsy] Rectal biopsy individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample143 [Rectal biopsy] Rectal biopsy individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample143 [Rectal biopsy] Rectal biopsy individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample143 [Rectal biopsy] Rectal biopsy individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562766
sample_title: Sample143 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind113; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample144 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample144 [Rectal biopsy] Rectal biopsy individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample144 [Rectal biopsy] Rectal biopsy individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample144 [Rectal biopsy] Rectal biopsy individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample144 [Rectal biopsy] Rectal biopsy individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562767
sample_title: Sample144 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind114; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample145 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample145 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample145 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample145 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample145 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562768
sample_title: Sample145 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample146 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample146 [Rectal biopsy] Rectal biopsy individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample146 [Rectal biopsy] Rectal biopsy individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample146 [Rectal biopsy] Rectal biopsy individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample146 [Rectal biopsy] Rectal biopsy individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562769
sample_title: Sample146 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind115; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample147 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample147 [Rectal biopsy] Rectal biopsy individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample147 [Rectal biopsy] Rectal biopsy individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample147 [Rectal biopsy] Rectal biopsy individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample147 [Rectal biopsy] Rectal biopsy individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562770
sample_title: Sample147 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind116; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample148 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample148 [Rectal biopsy] Rectal biopsy individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample148 [Rectal biopsy] Rectal biopsy individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample148 [Rectal biopsy] Rectal biopsy individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample148 [Rectal biopsy] Rectal biopsy individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562771
sample_title: Sample148 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind117; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample149 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample149 [Rectal biopsy] Rectal biopsy individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample149 [Rectal biopsy] Rectal biopsy individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample149 [Rectal biopsy] Rectal biopsy individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample149 [Rectal biopsy] Rectal biopsy individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562772
sample_title: Sample149 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind118; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample150 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample150 [Rectal biopsy] Rectal biopsy individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample150 [Rectal biopsy] Rectal biopsy individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample150 [Rectal biopsy] Rectal biopsy individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample150 [Rectal biopsy] Rectal biopsy individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562773
sample_title: Sample150 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind119; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample151 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample151 [Rectal biopsy] Rectal biopsy individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample151 [Rectal biopsy] Rectal biopsy individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample151 [Rectal biopsy] Rectal biopsy individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample151 [Rectal biopsy] Rectal biopsy individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562774
sample_title: Sample151 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind120; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample152 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample152 [Rectal biopsy] Rectal biopsy individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample152 [Rectal biopsy] Rectal biopsy individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample152 [Rectal biopsy] Rectal biopsy individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample152 [Rectal biopsy] Rectal biopsy individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562775
sample_title: Sample152 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind121; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample153 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample153 [Rectal biopsy] Rectal biopsy individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample153 [Rectal biopsy] Rectal biopsy individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample153 [Rectal biopsy] Rectal biopsy individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample153 [Rectal biopsy] Rectal biopsy individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562776
sample_title: Sample153 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind122; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample154 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample154 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample154 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample154 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample154 [Rectal biopsy] Rectal biopsy individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562777
sample_title: Sample154 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind317; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample155 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample155 [Rectal biopsy] Rectal biopsy individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample155 [Rectal biopsy] Rectal biopsy individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample155 [Rectal biopsy] Rectal biopsy individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample155 [Rectal biopsy] Rectal biopsy individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562778
sample_title: Sample155 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind123; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample156 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample156 [Rectal biopsy] Rectal biopsy individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample156 [Rectal biopsy] Rectal biopsy individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample156 [Rectal biopsy] Rectal biopsy individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample156 [Rectal biopsy] Rectal biopsy individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562779
sample_title: Sample156 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind124; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample157 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample157 [Rectal biopsy] Rectal biopsy individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample157 [Rectal biopsy] Rectal biopsy individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample157 [Rectal biopsy] Rectal biopsy individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample157 [Rectal biopsy] Rectal biopsy individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562780
sample_title: Sample157 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind125; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample158 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample158 [Rectal biopsy] Rectal biopsy individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample158 [Rectal biopsy] Rectal biopsy individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample158 [Rectal biopsy] Rectal biopsy individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample158 [Rectal biopsy] Rectal biopsy individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562781
sample_title: Sample158 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind126; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample159 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample159 [Rectal biopsy] Rectal biopsy individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample159 [Rectal biopsy] Rectal biopsy individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample159 [Rectal biopsy] Rectal biopsy individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample159 [Rectal biopsy] Rectal biopsy individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562782
sample_title: Sample159 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind127; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample160 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample160 [Rectal biopsy] Rectal biopsy individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample160 [Rectal biopsy] Rectal biopsy individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample160 [Rectal biopsy] Rectal biopsy individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample160 [Rectal biopsy] Rectal biopsy individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562783
sample_title: Sample160 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind128; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
Sample161 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample161 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample161 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample161 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample161 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562784
sample_title: Sample161 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample162 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample162 [Rectal biopsy] Rectal biopsy individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample162 [Rectal biopsy] Rectal biopsy individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample162 [Rectal biopsy] Rectal biopsy individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample162 [Rectal biopsy] Rectal biopsy individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562785
sample_title: Sample162 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind129; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample163 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample163 [Rectal biopsy] Rectal biopsy individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample163 [Rectal biopsy] Rectal biopsy individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample163 [Rectal biopsy] Rectal biopsy individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample163 [Rectal biopsy] Rectal biopsy individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562786
sample_title: Sample163 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind130; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample164 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample164 [Rectal biopsy] Rectal biopsy individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample164 [Rectal biopsy] Rectal biopsy individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample164 [Rectal biopsy] Rectal biopsy individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample164 [Rectal biopsy] Rectal biopsy individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562787
sample_title: Sample164 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind131; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample165 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample165 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample165 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample165 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample165 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562788
sample_title: Sample165 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample166 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample166 [Rectal biopsy] Rectal biopsy individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample166 [Rectal biopsy] Rectal biopsy individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample166 [Rectal biopsy] Rectal biopsy individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample166 [Rectal biopsy] Rectal biopsy individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562789
sample_title: Sample166 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind132; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
Sample167 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample167 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample167 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample167 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample167 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562790
sample_title: Sample167 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample168 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample168 [Rectal biopsy] Rectal biopsy individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample168 [Rectal biopsy] Rectal biopsy individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample168 [Rectal biopsy] Rectal biopsy individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample168 [Rectal biopsy] Rectal biopsy individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562791
sample_title: Sample168 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind133; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample169 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample169 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample169 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample169 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample169 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562792
sample_title: Sample169 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample170 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample170 [Rectal biopsy] Rectal biopsy individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample170 [Rectal biopsy] Rectal biopsy individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample170 [Rectal biopsy] Rectal biopsy individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample170 [Rectal biopsy] Rectal biopsy individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562793
sample_title: Sample170 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind134; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample171 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample171 [Rectal biopsy] Rectal biopsy individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample171 [Rectal biopsy] Rectal biopsy individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample171 [Rectal biopsy] Rectal biopsy individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample171 [Rectal biopsy] Rectal biopsy individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562794
sample_title: Sample171 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind135; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample172 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample172 [Rectal biopsy] Rectal biopsy individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample172 [Rectal biopsy] Rectal biopsy individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample172 [Rectal biopsy] Rectal biopsy individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample172 [Rectal biopsy] Rectal biopsy individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562795
sample_title: Sample172 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind136; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample173 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample173 [Rectal biopsy] Rectal biopsy individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample173 [Rectal biopsy] Rectal biopsy individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample173 [Rectal biopsy] Rectal biopsy individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample173 [Rectal biopsy] Rectal biopsy individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562796
sample_title: Sample173 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind137; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample175 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample175 [Rectal biopsy] Rectal biopsy individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample175 [Rectal biopsy] Rectal biopsy individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample175 [Rectal biopsy] Rectal biopsy individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample175 [Rectal biopsy] Rectal biopsy individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562797
sample_title: Sample175 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind139; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample176 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample176 [Rectal biopsy] Rectal biopsy individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample176 [Rectal biopsy] Rectal biopsy individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample176 [Rectal biopsy] Rectal biopsy individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample176 [Rectal biopsy] Rectal biopsy individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562798
sample_title: Sample176 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind140; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample177 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample177 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample177 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample177 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample177 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562799
sample_title: Sample177 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample178 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample178 [Rectal biopsy] Rectal biopsy individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample178 [Rectal biopsy] Rectal biopsy individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample178 [Rectal biopsy] Rectal biopsy individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample178 [Rectal biopsy] Rectal biopsy individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562800
sample_title: Sample178 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind141; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample179 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample179 [Rectal biopsy] Rectal biopsy individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample179 [Rectal biopsy] Rectal biopsy individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample179 [Rectal biopsy] Rectal biopsy individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample179 [Rectal biopsy] Rectal biopsy individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562801
sample_title: Sample179 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind142; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample180 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample180 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample180 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample180 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample180 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562802
sample_title: Sample180 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample181 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample181 [Rectal biopsy] Rectal biopsy individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample181 [Rectal biopsy] Rectal biopsy individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample181 [Rectal biopsy] Rectal biopsy individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample181 [Rectal biopsy] Rectal biopsy individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562803
sample_title: Sample181 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind143; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample182 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample182 [Rectal biopsy] Rectal biopsy individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample182 [Rectal biopsy] Rectal biopsy individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample182 [Rectal biopsy] Rectal biopsy individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample182 [Rectal biopsy] Rectal biopsy individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562804
sample_title: Sample182 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind144; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample183 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample183 [Rectal biopsy] Rectal biopsy individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample183 [Rectal biopsy] Rectal biopsy individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample183 [Rectal biopsy] Rectal biopsy individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample183 [Rectal biopsy] Rectal biopsy individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562805
sample_title: Sample183 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind145; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample184 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample184 [Rectal biopsy] Rectal biopsy individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample184 [Rectal biopsy] Rectal biopsy individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample184 [Rectal biopsy] Rectal biopsy individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample184 [Rectal biopsy] Rectal biopsy individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562806
sample_title: Sample184 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind146; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample185 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample185 [Rectal biopsy] Rectal biopsy individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample185 [Rectal biopsy] Rectal biopsy individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample185 [Rectal biopsy] Rectal biopsy individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample185 [Rectal biopsy] Rectal biopsy individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562807
sample_title: Sample185 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind147; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample186 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample186 [Rectal biopsy] Rectal biopsy individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample186 [Rectal biopsy] Rectal biopsy individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample186 [Rectal biopsy] Rectal biopsy individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample186 [Rectal biopsy] Rectal biopsy individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562808
sample_title: Sample186 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind148; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample187 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample187 [Rectal biopsy] Rectal biopsy individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample187 [Rectal biopsy] Rectal biopsy individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample187 [Rectal biopsy] Rectal biopsy individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample187 [Rectal biopsy] Rectal biopsy individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562809
sample_title: Sample187 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind149; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample188 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample188 [Rectal biopsy] Rectal biopsy individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample188 [Rectal biopsy] Rectal biopsy individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample188 [Rectal biopsy] Rectal biopsy individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample188 [Rectal biopsy] Rectal biopsy individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562810
sample_title: Sample188 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind150; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample189 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample189 [Rectal biopsy] Rectal biopsy individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample189 [Rectal biopsy] Rectal biopsy individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample189 [Rectal biopsy] Rectal biopsy individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample189 [Rectal biopsy] Rectal biopsy individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562811
sample_title: Sample189 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind151; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample190 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample190 [Rectal biopsy] Rectal biopsy individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample190 [Rectal biopsy] Rectal biopsy individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample190 [Rectal biopsy] Rectal biopsy individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample190 [Rectal biopsy] Rectal biopsy individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562812
sample_title: Sample190 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind152; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample191 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample191 [Rectal biopsy] Rectal biopsy individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample191 [Rectal biopsy] Rectal biopsy individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample191 [Rectal biopsy] Rectal biopsy individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample191 [Rectal biopsy] Rectal biopsy individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562813
sample_title: Sample191 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind153; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample192 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample192 [Rectal biopsy] Rectal biopsy individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample192 [Rectal biopsy] Rectal biopsy individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample192 [Rectal biopsy] Rectal biopsy individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample192 [Rectal biopsy] Rectal biopsy individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562814
sample_title: Sample192 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind154; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample193 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample193 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample193 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample193 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample193 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562815
sample_title: Sample193 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample194 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample194 [Rectal biopsy] Rectal biopsy individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample194 [Rectal biopsy] Rectal biopsy individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample194 [Rectal biopsy] Rectal biopsy individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample194 [Rectal biopsy] Rectal biopsy individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562816
sample_title: Sample194 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind155; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample195 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample195 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample195 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample195 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample195 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562817
sample_title: Sample195 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample196 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample196 [Rectal biopsy] Rectal biopsy individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample196 [Rectal biopsy] Rectal biopsy individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample196 [Rectal biopsy] Rectal biopsy individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample196 [Rectal biopsy] Rectal biopsy individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562818
sample_title: Sample196 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind156; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample197 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample197 [Rectal biopsy] Rectal biopsy individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample197 [Rectal biopsy] Rectal biopsy individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample197 [Rectal biopsy] Rectal biopsy individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample197 [Rectal biopsy] Rectal biopsy individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562819
sample_title: Sample197 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind157; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample198 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample198 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample198 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample198 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample198 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562820
sample_title: Sample198 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample199 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample199 [Rectal biopsy] Rectal biopsy individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample199 [Rectal biopsy] Rectal biopsy individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample199 [Rectal biopsy] Rectal biopsy individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample199 [Rectal biopsy] Rectal biopsy individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562821
sample_title: Sample199 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind158; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample200 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample200 [Rectal biopsy] Rectal biopsy individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample200 [Rectal biopsy] Rectal biopsy individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample200 [Rectal biopsy] Rectal biopsy individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample200 [Rectal biopsy] Rectal biopsy individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562822
sample_title: Sample200 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind159; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample201 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample201 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample201 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample201 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample201 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562823
sample_title: Sample201 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample202 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample202 [Rectal biopsy] Rectal biopsy individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample202 [Rectal biopsy] Rectal biopsy individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample202 [Rectal biopsy] Rectal biopsy individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample202 [Rectal biopsy] Rectal biopsy individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562824
sample_title: Sample202 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind160; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample203 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample203 [Rectal biopsy] Rectal biopsy individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample203 [Rectal biopsy] Rectal biopsy individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample203 [Rectal biopsy] Rectal biopsy individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample203 [Rectal biopsy] Rectal biopsy individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562825
sample_title: Sample203 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind161; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample204 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample204 [Rectal biopsy] Rectal biopsy individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample204 [Rectal biopsy] Rectal biopsy individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample204 [Rectal biopsy] Rectal biopsy individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample204 [Rectal biopsy] Rectal biopsy individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562826
sample_title: Sample204 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind162; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample205 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample205 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample205 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample205 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample205 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562827
sample_title: Sample205 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample206 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample206 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample206 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample206 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample206 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562828
sample_title: Sample206 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample207 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample207 [Rectal biopsy] Rectal biopsy individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample207 [Rectal biopsy] Rectal biopsy individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample207 [Rectal biopsy] Rectal biopsy individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample207 [Rectal biopsy] Rectal biopsy individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562829
sample_title: Sample207 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind163; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample208 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample208 [Rectal biopsy] Rectal biopsy individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample208 [Rectal biopsy] Rectal biopsy individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample208 [Rectal biopsy] Rectal biopsy individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample208 [Rectal biopsy] Rectal biopsy individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562830
sample_title: Sample208 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind164; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample209 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample209 [Rectal biopsy] Rectal biopsy individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample209 [Rectal biopsy] Rectal biopsy individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample209 [Rectal biopsy] Rectal biopsy individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample209 [Rectal biopsy] Rectal biopsy individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562831
sample_title: Sample209 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind165; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample210 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample210 [Rectal biopsy] Rectal biopsy individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample210 [Rectal biopsy] Rectal biopsy individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample210 [Rectal biopsy] Rectal biopsy individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample210 [Rectal biopsy] Rectal biopsy individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562832
sample_title: Sample210 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind166; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample211 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample211 [Rectal biopsy] Rectal biopsy individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample211 [Rectal biopsy] Rectal biopsy individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample211 [Rectal biopsy] Rectal biopsy individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample211 [Rectal biopsy] Rectal biopsy individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562833
sample_title: Sample211 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind167; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample212 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample212 [Rectal biopsy] Rectal biopsy individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample212 [Rectal biopsy] Rectal biopsy individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample212 [Rectal biopsy] Rectal biopsy individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample212 [Rectal biopsy] Rectal biopsy individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562834
sample_title: Sample212 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind168; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample213 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample213 [Rectal biopsy] Rectal biopsy individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample213 [Rectal biopsy] Rectal biopsy individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample213 [Rectal biopsy] Rectal biopsy individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample213 [Rectal biopsy] Rectal biopsy individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562835
sample_title: Sample213 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind169; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample214 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample214 [Rectal biopsy] Rectal biopsy individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatri...
- Sample214 [Rectal biopsy] Rectal biopsy individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample214 [Rectal biopsy] Rectal biopsy individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatri...
- Sample214 [Rectal biopsy] Rectal biopsy individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562836
sample_title: Sample214 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind170; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample215 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample215 [Rectal biopsy] Rectal biopsy individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample215 [Rectal biopsy] Rectal biopsy individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample215 [Rectal biopsy] Rectal biopsy individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample215 [Rectal biopsy] Rectal biopsy individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562837
sample_title: Sample215 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind171; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample216 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample216 [Rectal biopsy] Rectal biopsy individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample216 [Rectal biopsy] Rectal biopsy individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample216 [Rectal biopsy] Rectal biopsy individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample216 [Rectal biopsy] Rectal biopsy individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562838
sample_title: Sample216 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind172; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample217 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample217 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample217 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample217 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample217 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562839
sample_title: Sample217 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample218 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample218 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample218 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample218 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample218 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562840
sample_title: Sample218 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample219 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample219 [Rectal biopsy] Rectal biopsy individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample219 [Rectal biopsy] Rectal biopsy individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample219 [Rectal biopsy] Rectal biopsy individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample219 [Rectal biopsy] Rectal biopsy individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562841
sample_title: Sample219 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind173; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample220 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample220 [Rectal biopsy] Rectal biopsy individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample220 [Rectal biopsy] Rectal biopsy individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample220 [Rectal biopsy] Rectal biopsy individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample220 [Rectal biopsy] Rectal biopsy individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562842
sample_title: Sample220 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind174; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample221 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample221 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample221 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample221 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample221 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562843
sample_title: Sample221 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample222 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample222 [Rectal biopsy] Rectal biopsy individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample222 [Rectal biopsy] Rectal biopsy individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample222 [Rectal biopsy] Rectal biopsy individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample222 [Rectal biopsy] Rectal biopsy individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562844
sample_title: Sample222 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind175; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample223 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample223 [Rectal biopsy] Rectal biopsy individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample223 [Rectal biopsy] Rectal biopsy individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample223 [Rectal biopsy] Rectal biopsy individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample223 [Rectal biopsy] Rectal biopsy individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562845
sample_title: Sample223 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind176; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample224 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample224 [Rectal biopsy] Rectal biopsy individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample224 [Rectal biopsy] Rectal biopsy individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample224 [Rectal biopsy] Rectal biopsy individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample224 [Rectal biopsy] Rectal biopsy individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562846
sample_title: Sample224 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind177; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample225 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample225 [Rectal biopsy] Rectal biopsy individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample225 [Rectal biopsy] Rectal biopsy individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample225 [Rectal biopsy] Rectal biopsy individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample225 [Rectal biopsy] Rectal biopsy individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562847
sample_title: Sample225 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind178; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample226 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample226 [Rectal biopsy] Rectal biopsy individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample226 [Rectal biopsy] Rectal biopsy individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample226 [Rectal biopsy] Rectal biopsy individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample226 [Rectal biopsy] Rectal biopsy individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562848
sample_title: Sample226 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind179; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample227 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample227 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample227 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample227 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample227 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562849
sample_title: Sample227 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample228 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample228 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample228 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample228 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample228 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562850
sample_title: Sample228 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample229 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample229 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample229 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample229 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample229 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562851
sample_title: Sample229 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample230 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample230 [Rectal biopsy] Rectal biopsy individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample230 [Rectal biopsy] Rectal biopsy individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample230 [Rectal biopsy] Rectal biopsy individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample230 [Rectal biopsy] Rectal biopsy individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562852
sample_title: Sample230 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind180; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample231 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample231 [Rectal biopsy] Rectal biopsy individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample231 [Rectal biopsy] Rectal biopsy individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample231 [Rectal biopsy] Rectal biopsy individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample231 [Rectal biopsy] Rectal biopsy individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562853
sample_title: Sample231 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind181; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample232 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample232 [Rectal biopsy] Rectal biopsy individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample232 [Rectal biopsy] Rectal biopsy individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample232 [Rectal biopsy] Rectal biopsy individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample232 [Rectal biopsy] Rectal biopsy individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562854
sample_title: Sample232 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind182; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample233 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample233 [Rectal biopsy] Rectal biopsy individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample233 [Rectal biopsy] Rectal biopsy individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample233 [Rectal biopsy] Rectal biopsy individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample233 [Rectal biopsy] Rectal biopsy individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562855
sample_title: Sample233 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind183; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample234 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample234 [Rectal biopsy] Rectal biopsy individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample234 [Rectal biopsy] Rectal biopsy individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample234 [Rectal biopsy] Rectal biopsy individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample234 [Rectal biopsy] Rectal biopsy individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562856
sample_title: Sample234 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind184; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample235 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample235 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample235 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample235 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample235 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562857
sample_title: Sample235 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample236 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample236 [Rectal biopsy] Rectal biopsy individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample236 [Rectal biopsy] Rectal biopsy individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample236 [Rectal biopsy] Rectal biopsy individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample236 [Rectal biopsy] Rectal biopsy individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562858
sample_title: Sample236 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind185; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample237 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample237 [Rectal biopsy] Rectal biopsy individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample237 [Rectal biopsy] Rectal biopsy individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample237 [Rectal biopsy] Rectal biopsy individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample237 [Rectal biopsy] Rectal biopsy individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562859
sample_title: Sample237 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind186; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample238 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample238 [Rectal biopsy] Rectal biopsy individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample238 [Rectal biopsy] Rectal biopsy individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample238 [Rectal biopsy] Rectal biopsy individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample238 [Rectal biopsy] Rectal biopsy individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562860
sample_title: Sample238 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind187; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample239 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample239 [Rectal biopsy] Rectal biopsy individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample239 [Rectal biopsy] Rectal biopsy individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample239 [Rectal biopsy] Rectal biopsy individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample239 [Rectal biopsy] Rectal biopsy individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562861
sample_title: Sample239 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind188; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample240 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample240 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample240 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample240 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample240 [Rectal biopsy] Rectal biopsy individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562862
sample_title: Sample240 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind329; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample241 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample241 [Rectal biopsy] Rectal biopsy individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample241 [Rectal biopsy] Rectal biopsy individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample241 [Rectal biopsy] Rectal biopsy individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample241 [Rectal biopsy] Rectal biopsy individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562863
sample_title: Sample241 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind189; gender: F; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample242 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample242 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample242 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample242 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample242 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562864
sample_title: Sample242 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample243 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample243 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample243 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample243 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample243 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562865
sample_title: Sample243 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample244 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample244 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample244 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample244 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample244 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562866
sample_title: Sample244 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample245 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample245 [Rectal biopsy] Rectal biopsy individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample245 [Rectal biopsy] Rectal biopsy individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample245 [Rectal biopsy] Rectal biopsy individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample245 [Rectal biopsy] Rectal biopsy individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562867
sample_title: Sample245 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind190; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample246 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample246 [Rectal biopsy] Rectal biopsy individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample246 [Rectal biopsy] Rectal biopsy individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample246 [Rectal biopsy] Rectal biopsy individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample246 [Rectal biopsy] Rectal biopsy individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562868
sample_title: Sample246 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind191; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample247 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample247 [Rectal biopsy] Rectal biopsy individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample247 [Rectal biopsy] Rectal biopsy individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample247 [Rectal biopsy] Rectal biopsy individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample247 [Rectal biopsy] Rectal biopsy individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562869
sample_title: Sample247 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind192; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample248 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample248 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample248 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample248 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample248 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562870
sample_title: Sample248 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample249 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample249 [Rectal biopsy] Rectal biopsy individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample249 [Rectal biopsy] Rectal biopsy individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample249 [Rectal biopsy] Rectal biopsy individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample249 [Rectal biopsy] Rectal biopsy individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562871
sample_title: Sample249 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind193; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample250 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample250 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample250 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample250 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample250 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562872
sample_title: Sample250 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample251 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample251 [Rectal biopsy] Rectal biopsy individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample251 [Rectal biopsy] Rectal biopsy individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample251 [Rectal biopsy] Rectal biopsy individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample251 [Rectal biopsy] Rectal biopsy individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562873
sample_title: Sample251 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind194; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample252 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample252 [Rectal biopsy] Rectal biopsy individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample252 [Rectal biopsy] Rectal biopsy individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample252 [Rectal biopsy] Rectal biopsy individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample252 [Rectal biopsy] Rectal biopsy individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562874
sample_title: Sample252 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind195; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample253 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample253 [Rectal biopsy] Rectal biopsy individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample253 [Rectal biopsy] Rectal biopsy individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample253 [Rectal biopsy] Rectal biopsy individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample253 [Rectal biopsy] Rectal biopsy individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562875
sample_title: Sample253 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind196; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample254 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample254 [Rectal biopsy] Rectal biopsy individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample254 [Rectal biopsy] Rectal biopsy individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample254 [Rectal biopsy] Rectal biopsy individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample254 [Rectal biopsy] Rectal biopsy individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562876
sample_title: Sample254 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind197; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample255 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample255 [Rectal biopsy] Rectal biopsy individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample255 [Rectal biopsy] Rectal biopsy individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample255 [Rectal biopsy] Rectal biopsy individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample255 [Rectal biopsy] Rectal biopsy individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562877
sample_title: Sample255 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind198; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample256 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample256 [Rectal biopsy] Rectal biopsy individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample256 [Rectal biopsy] Rectal biopsy individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample256 [Rectal biopsy] Rectal biopsy individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample256 [Rectal biopsy] Rectal biopsy individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562878
sample_title: Sample256 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind199; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample257 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample257 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample257 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample257 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample257 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562879
sample_title: Sample257 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample258 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample258 [Rectal biopsy] Rectal biopsy individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample258 [Rectal biopsy] Rectal biopsy individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample258 [Rectal biopsy] Rectal biopsy individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample258 [Rectal biopsy] Rectal biopsy individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562880
sample_title: Sample258 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind200; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample259 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample259 [Rectal biopsy] Rectal biopsy individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample259 [Rectal biopsy] Rectal biopsy individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample259 [Rectal biopsy] Rectal biopsy individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample259 [Rectal biopsy] Rectal biopsy individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562881
sample_title: Sample259 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind201; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample260 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample260 [Rectal biopsy] Rectal biopsy individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample260 [Rectal biopsy] Rectal biopsy individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample260 [Rectal biopsy] Rectal biopsy individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample260 [Rectal biopsy] Rectal biopsy individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562882
sample_title: Sample260 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind202; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample261 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample261 [Rectal biopsy] Rectal biopsy individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample261 [Rectal biopsy] Rectal biopsy individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample261 [Rectal biopsy] Rectal biopsy individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample261 [Rectal biopsy] Rectal biopsy individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562883
sample_title: Sample261 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind203; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample262 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample262 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample262 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample262 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample262 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562884
sample_title: Sample262 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample263 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample263 [Rectal biopsy] Rectal biopsy individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample263 [Rectal biopsy] Rectal biopsy individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample263 [Rectal biopsy] Rectal biopsy individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample263 [Rectal biopsy] Rectal biopsy individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562885
sample_title: Sample263 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind204; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample264 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample264 [Rectal biopsy] Rectal biopsy individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample264 [Rectal biopsy] Rectal biopsy individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample264 [Rectal biopsy] Rectal biopsy individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample264 [Rectal biopsy] Rectal biopsy individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562886
sample_title: Sample264 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind205; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample265 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample265 [Rectal biopsy] Rectal biopsy individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample265 [Rectal biopsy] Rectal biopsy individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample265 [Rectal biopsy] Rectal biopsy individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample265 [Rectal biopsy] Rectal biopsy individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562887
sample_title: Sample265 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind206; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample266 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample266 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample266 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample266 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample266 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562888
sample_title: Sample266 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample267 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample267 [Rectal biopsy] Rectal biopsy individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample267 [Rectal biopsy] Rectal biopsy individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample267 [Rectal biopsy] Rectal biopsy individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample267 [Rectal biopsy] Rectal biopsy individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562889
sample_title: Sample267 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind207; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample268 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample268 [Rectal biopsy] Rectal biopsy individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample268 [Rectal biopsy] Rectal biopsy individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample268 [Rectal biopsy] Rectal biopsy individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample268 [Rectal biopsy] Rectal biopsy individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562890
sample_title: Sample268 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind208; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample269 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample269 [Rectal biopsy] Rectal biopsy individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample269 [Rectal biopsy] Rectal biopsy individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample269 [Rectal biopsy] Rectal biopsy individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample269 [Rectal biopsy] Rectal biopsy individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562891
sample_title: Sample269 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind209; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample270 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample270 [Rectal biopsy] Rectal biopsy individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample270 [Rectal biopsy] Rectal biopsy individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample270 [Rectal biopsy] Rectal biopsy individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample270 [Rectal biopsy] Rectal biopsy individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562892
sample_title: Sample270 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind210; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample271 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample271 [Rectal biopsy] Rectal biopsy individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample271 [Rectal biopsy] Rectal biopsy individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample271 [Rectal biopsy] Rectal biopsy individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample271 [Rectal biopsy] Rectal biopsy individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562893
sample_title: Sample271 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind211; gender: F; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample272 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample272 [Rectal biopsy] Rectal biopsy individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample272 [Rectal biopsy] Rectal biopsy individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample272 [Rectal biopsy] Rectal biopsy individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample272 [Rectal biopsy] Rectal biopsy individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562894
sample_title: Sample272 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind212; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample273 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample273 [Rectal biopsy] Rectal biopsy individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample273 [Rectal biopsy] Rectal biopsy individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample273 [Rectal biopsy] Rectal biopsy individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample273 [Rectal biopsy] Rectal biopsy individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562895
sample_title: Sample273 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind213; gender: F; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample274 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample274 [Rectal biopsy] Rectal biopsy individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample274 [Rectal biopsy] Rectal biopsy individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample274 [Rectal biopsy] Rectal biopsy individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample274 [Rectal biopsy] Rectal biopsy individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562896
sample_title: Sample274 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind214; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample275 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample275 [Rectal biopsy] Rectal biopsy individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample275 [Rectal biopsy] Rectal biopsy individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample275 [Rectal biopsy] Rectal biopsy individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample275 [Rectal biopsy] Rectal biopsy individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562897
sample_title: Sample275 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind215; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample276 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample276 [Rectal biopsy] Rectal biopsy individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample276 [Rectal biopsy] Rectal biopsy individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample276 [Rectal biopsy] Rectal biopsy individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample276 [Rectal biopsy] Rectal biopsy individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562898
sample_title: Sample276 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind216; gender: M; age at diagnosis: 6; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample277 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample277 [Rectal biopsy] Rectal biopsy individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample277 [Rectal biopsy] Rectal biopsy individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample277 [Rectal biopsy] Rectal biopsy individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample277 [Rectal biopsy] Rectal biopsy individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562899
sample_title: Sample277 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind217; gender: F; age at diagnosis: 4; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample278 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample278 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample278 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample278 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample278 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562900
sample_title: Sample278 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample279 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample279 [Rectal biopsy] Rectal biopsy individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample279 [Rectal biopsy] Rectal biopsy individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample279 [Rectal biopsy] Rectal biopsy individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample279 [Rectal biopsy] Rectal biopsy individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562901
sample_title: Sample279 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind218; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample280 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample280 [Rectal biopsy] Rectal biopsy individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample280 [Rectal biopsy] Rectal biopsy individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample280 [Rectal biopsy] Rectal biopsy individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample280 [Rectal biopsy] Rectal biopsy individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562902
sample_title: Sample280 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind219; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample281 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample281 [Rectal biopsy] Rectal biopsy individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample281 [Rectal biopsy] Rectal biopsy individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample281 [Rectal biopsy] Rectal biopsy individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample281 [Rectal biopsy] Rectal biopsy individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562903
sample_title: Sample281 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind220; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample282 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample282 [Rectal biopsy] Rectal biopsy individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample282 [Rectal biopsy] Rectal biopsy individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample282 [Rectal biopsy] Rectal biopsy individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample282 [Rectal biopsy] Rectal biopsy individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562904
sample_title: Sample282 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind221; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample283 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample283 [Rectal biopsy] Rectal biopsy individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample283 [Rectal biopsy] Rectal biopsy individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample283 [Rectal biopsy] Rectal biopsy individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample283 [Rectal biopsy] Rectal biopsy individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562905
sample_title: Sample283 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind222; gender: M; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample284 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample284 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample284 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample284 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample284 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562906
sample_title: Sample284 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample285 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample285 [Rectal biopsy] Rectal biopsy individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample285 [Rectal biopsy] Rectal biopsy individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample285 [Rectal biopsy] Rectal biopsy individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample285 [Rectal biopsy] Rectal biopsy individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562907
sample_title: Sample285 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind223; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample286 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample286 [Rectal biopsy] Rectal biopsy individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample286 [Rectal biopsy] Rectal biopsy individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample286 [Rectal biopsy] Rectal biopsy individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample286 [Rectal biopsy] Rectal biopsy individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562908
sample_title: Sample286 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind224; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample287 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample287 [Rectal biopsy] Rectal biopsy individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample287 [Rectal biopsy] Rectal biopsy individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample287 [Rectal biopsy] Rectal biopsy individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample287 [Rectal biopsy] Rectal biopsy individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562909
sample_title: Sample287 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind225; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample288 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample288 [Rectal biopsy] Rectal biopsy individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample288 [Rectal biopsy] Rectal biopsy individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample288 [Rectal biopsy] Rectal biopsy individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample288 [Rectal biopsy] Rectal biopsy individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562910
sample_title: Sample288 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind226; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample289 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample289 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample289 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample289 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample289 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562911
sample_title: Sample289 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample290 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample290 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample290 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample290 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample290 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562912
sample_title: Sample290 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample291 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample291 [Rectal biopsy] Rectal biopsy individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample291 [Rectal biopsy] Rectal biopsy individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample291 [Rectal biopsy] Rectal biopsy individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample291 [Rectal biopsy] Rectal biopsy individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562913
sample_title: Sample291 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind227; gender: F; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample292 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample292 [Rectal biopsy] Rectal biopsy individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample292 [Rectal biopsy] Rectal biopsy individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample292 [Rectal biopsy] Rectal biopsy individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample292 [Rectal biopsy] Rectal biopsy individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562914
sample_title: Sample292 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind228; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample293 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample293 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample293 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample293 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample293 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562915
sample_title: Sample293 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample294 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample294 [Rectal biopsy] Rectal biopsy individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample294 [Rectal biopsy] Rectal biopsy individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample294 [Rectal biopsy] Rectal biopsy individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample294 [Rectal biopsy] Rectal biopsy individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562916
sample_title: Sample294 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind229; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample295 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample295 [Rectal biopsy] Rectal biopsy individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample295 [Rectal biopsy] Rectal biopsy individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample295 [Rectal biopsy] Rectal biopsy individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample295 [Rectal biopsy] Rectal biopsy individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562917
sample_title: Sample295 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind230; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample296 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample296 [Rectal biopsy] Rectal biopsy individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample296 [Rectal biopsy] Rectal biopsy individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample296 [Rectal biopsy] Rectal biopsy individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
- Sample296 [Rectal biopsy] Rectal biopsy individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562918
sample_title: Sample296 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind231; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 1; disease: pediatric ulcerative colitis
Sample297 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample297 [Rectal biopsy] Rectal biopsy individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample297 [Rectal biopsy] Rectal biopsy individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample297 [Rectal biopsy] Rectal biopsy individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample297 [Rectal biopsy] Rectal biopsy individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562919
sample_title: Sample297 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind232; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample298 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample298 [Rectal biopsy] Rectal biopsy individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample298 [Rectal biopsy] Rectal biopsy individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample298 [Rectal biopsy] Rectal biopsy individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample298 [Rectal biopsy] Rectal biopsy individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562920
sample_title: Sample298 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind233; gender: F; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample299 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample299 [Rectal biopsy] Rectal biopsy individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample299 [Rectal biopsy] Rectal biopsy individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample299 [Rectal biopsy] Rectal biopsy individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample299 [Rectal biopsy] Rectal biopsy individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562921
sample_title: Sample299 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind234; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample300 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample300 [Rectal biopsy] Rectal biopsy individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample300 [Rectal biopsy] Rectal biopsy individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample300 [Rectal biopsy] Rectal biopsy individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample300 [Rectal biopsy] Rectal biopsy individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562922
sample_title: Sample300 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind235; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample301 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample301 [Rectal biopsy] Rectal biopsy individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample301 [Rectal biopsy] Rectal biopsy individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample301 [Rectal biopsy] Rectal biopsy individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample301 [Rectal biopsy] Rectal biopsy individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562923
sample_title: Sample301 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind236; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample302 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample302 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample302 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample302 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample302 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562924
sample_title: Sample302 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample303 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample303 [Rectal biopsy] Rectal biopsy individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample303 [Rectal biopsy] Rectal biopsy individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample303 [Rectal biopsy] Rectal biopsy individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample303 [Rectal biopsy] Rectal biopsy individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562925
sample_title: Sample303 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind237; gender: F; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample304 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample304 [Rectal biopsy] Rectal biopsy individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample304 [Rectal biopsy] Rectal biopsy individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample304 [Rectal biopsy] Rectal biopsy individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample304 [Rectal biopsy] Rectal biopsy individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562926
sample_title: Sample304 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind238; gender: M; age at diagnosis: 8; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample305 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample305 [Rectal biopsy] Rectal biopsy individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample305 [Rectal biopsy] Rectal biopsy individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample305 [Rectal biopsy] Rectal biopsy individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample305 [Rectal biopsy] Rectal biopsy individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562927
sample_title: Sample305 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind239; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample306 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample306 [Rectal biopsy] Rectal biopsy individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample306 [Rectal biopsy] Rectal biopsy individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample306 [Rectal biopsy] Rectal biopsy individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample306 [Rectal biopsy] Rectal biopsy individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562928
sample_title: Sample306 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind240; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample307 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample307 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample307 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample307 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample307 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562929
sample_title: Sample307 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample308 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample308 [Rectal biopsy] Rectal biopsy individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample308 [Rectal biopsy] Rectal biopsy individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample308 [Rectal biopsy] Rectal biopsy individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample308 [Rectal biopsy] Rectal biopsy individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562930
sample_title: Sample308 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind241; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample309 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample309 [Rectal biopsy] Rectal biopsy individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample309 [Rectal biopsy] Rectal biopsy individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample309 [Rectal biopsy] Rectal biopsy individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
- Sample309 [Rectal biopsy] Rectal biopsy individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562931
sample_title: Sample309 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind242; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 1; disease: pediatric ulcerative colitis
Sample310 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample310 [Rectal biopsy] Rectal biopsy individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample310 [Rectal biopsy] Rectal biopsy individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample310 [Rectal biopsy] Rectal biopsy individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample310 [Rectal biopsy] Rectal biopsy individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562932
sample_title: Sample310 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind243; gender: F; age at diagnosis: 12; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample311 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample311 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample311 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample311 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample311 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562933
sample_title: Sample311 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample312 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample312 [Rectal biopsy] Rectal biopsy individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample312 [Rectal biopsy] Rectal biopsy individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample312 [Rectal biopsy] Rectal biopsy individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample312 [Rectal biopsy] Rectal biopsy individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562934
sample_title: Sample312 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind244; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample313 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample313 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample313 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample313 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample313 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562935
sample_title: Sample313 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample314 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample314 [Rectal biopsy] Rectal biopsy individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample314 [Rectal biopsy] Rectal biopsy individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample314 [Rectal biopsy] Rectal biopsy individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample314 [Rectal biopsy] Rectal biopsy individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562936
sample_title: Sample314 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind245; gender: M; age at diagnosis: 9; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample315 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample315 [Rectal biopsy] Rectal biopsy individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample315 [Rectal biopsy] Rectal biopsy individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample315 [Rectal biopsy] Rectal biopsy individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample315 [Rectal biopsy] Rectal biopsy individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562937
sample_title: Sample315 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind246; gender: M; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample316 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample316 [Rectal biopsy] Rectal biopsy individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample316 [Rectal biopsy] Rectal biopsy individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample316 [Rectal biopsy] Rectal biopsy individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample316 [Rectal biopsy] Rectal biopsy individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562938
sample_title: Sample316 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind247; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample317 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample317 [Rectal biopsy] Rectal biopsy individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample317 [Rectal biopsy] Rectal biopsy individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample317 [Rectal biopsy] Rectal biopsy individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample317 [Rectal biopsy] Rectal biopsy individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562939
sample_title: Sample317 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind248; gender: M; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample318 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample318 [Rectal biopsy] Rectal biopsy individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample318 [Rectal biopsy] Rectal biopsy individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample318 [Rectal biopsy] Rectal biopsy individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample318 [Rectal biopsy] Rectal biopsy individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562940
sample_title: Sample318 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind249; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample319 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample319 [Rectal biopsy] Rectal biopsy individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample319 [Rectal biopsy] Rectal biopsy individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample319 [Rectal biopsy] Rectal biopsy individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample319 [Rectal biopsy] Rectal biopsy individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562941
sample_title: Sample319 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind250; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample320 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample320 [Rectal biopsy] Rectal biopsy individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample320 [Rectal biopsy] Rectal biopsy individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample320 [Rectal biopsy] Rectal biopsy individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample320 [Rectal biopsy] Rectal biopsy individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562942
sample_title: Sample320 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind251; gender: M; age at diagnosis: 11; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample321 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample321 [Rectal biopsy] Rectal biopsy individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample321 [Rectal biopsy] Rectal biopsy individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample321 [Rectal biopsy] Rectal biopsy individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample321 [Rectal biopsy] Rectal biopsy individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562943
sample_title: Sample321 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind252; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample322 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample322 [Rectal biopsy] Rectal biopsy individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample322 [Rectal biopsy] Rectal biopsy individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample322 [Rectal biopsy] Rectal biopsy individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample322 [Rectal biopsy] Rectal biopsy individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562944
sample_title: Sample322 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind253; gender: F; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample323 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample323 [Rectal biopsy] Rectal biopsy individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample323 [Rectal biopsy] Rectal biopsy individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample323 [Rectal biopsy] Rectal biopsy individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample323 [Rectal biopsy] Rectal biopsy individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562945
sample_title: Sample323 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind254; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample324 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample324 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample324 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample324 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample324 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562946
sample_title: Sample324 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample325 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample325 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample325 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample325 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample325 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562947
sample_title: Sample325 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample326 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample326 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample326 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample326 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample326 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562948
sample_title: Sample326 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample327 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample327 [Rectal biopsy] Rectal biopsy individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample327 [Rectal biopsy] Rectal biopsy individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample327 [Rectal biopsy] Rectal biopsy individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
- Sample327 [Rectal biopsy] Rectal biopsy individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562949
sample_title: Sample327 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind255; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample328 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample328 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample328 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample328 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample328 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562950
sample_title: Sample328 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample329 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample329 [Rectal biopsy] Rectal biopsy individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample329 [Rectal biopsy] Rectal biopsy individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample329 [Rectal biopsy] Rectal biopsy individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample329 [Rectal biopsy] Rectal biopsy individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562951
sample_title: Sample329 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind256; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample330 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample330 [Rectal biopsy] Rectal biopsy individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample330 [Rectal biopsy] Rectal biopsy individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample330 [Rectal biopsy] Rectal biopsy individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample330 [Rectal biopsy] Rectal biopsy individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562952
sample_title: Sample330 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind257; gender: F; age at diagnosis: 13; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample331 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample331 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample331 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample331 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample331 [Rectal biopsy] Rectal biopsy individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562953
sample_title: Sample331 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind319; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample332 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample332 [Rectal biopsy] Rectal biopsy individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample332 [Rectal biopsy] Rectal biopsy individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample332 [Rectal biopsy] Rectal biopsy individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample332 [Rectal biopsy] Rectal biopsy individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562954
sample_title: Sample332 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind258; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample333 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample333 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample333 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample333 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample333 [Rectal biopsy] Rectal biopsy individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562955
sample_title: Sample333 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind333; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample334 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample334 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample334 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample334 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
- Sample334 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562956
sample_title: Sample334 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample335 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample335 [Rectal biopsy] Rectal biopsy individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample335 [Rectal biopsy] Rectal biopsy individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample335 [Rectal biopsy] Rectal biopsy individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample335 [Rectal biopsy] Rectal biopsy individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562957
sample_title: Sample335 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind259; gender: F; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample336 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample336 [Rectal biopsy] Rectal biopsy individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample336 [Rectal biopsy] Rectal biopsy individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample336 [Rectal biopsy] Rectal biopsy individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample336 [Rectal biopsy] Rectal biopsy individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562958
sample_title: Sample336 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind260; gender: M; age at diagnosis: 10; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample337 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample337 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample337 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample337 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample337 [Rectal biopsy] Rectal biopsy individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562959
sample_title: Sample337 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind315; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample338 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample338 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample338 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample338 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample338 [Rectal biopsy] Rectal biopsy individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562960
sample_title: Sample338 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind340; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample339 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample339 [Rectal biopsy] Rectal biopsy individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample339 [Rectal biopsy] Rectal biopsy individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample339 [Rectal biopsy] Rectal biopsy individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample339 [Rectal biopsy] Rectal biopsy individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562961
sample_title: Sample339 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind261; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample340 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample340 [Rectal biopsy] Rectal biopsy individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample340 [Rectal biopsy] Rectal biopsy individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample340 [Rectal biopsy] Rectal biopsy individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample340 [Rectal biopsy] Rectal biopsy individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562962
sample_title: Sample340 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind262; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample341 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample341 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample341 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample341 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample341 [Rectal biopsy] Rectal biopsy individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562963
sample_title: Sample341 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind284; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample342 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample342 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample342 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample342 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample342 [Rectal biopsy] Rectal biopsy individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562964
sample_title: Sample342 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind283; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample343 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample343 [Rectal biopsy] Rectal biopsy individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample343 [Rectal biopsy] Rectal biopsy individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample343 [Rectal biopsy] Rectal biopsy individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample343 [Rectal biopsy] Rectal biopsy individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562965
sample_title: Sample343 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind263; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample344 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample344 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample344 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample344 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample344 [Rectal biopsy] Rectal biopsy individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562966
sample_title: Sample344 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind291; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample346 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample346 [Rectal biopsy] Rectal biopsy individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample346 [Rectal biopsy] Rectal biopsy individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample346 [Rectal biopsy] Rectal biopsy individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample346 [Rectal biopsy] Rectal biopsy individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562967
sample_title: Sample346 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind264; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample347 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample347 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample347 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample347 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample347 [Rectal biopsy] Rectal biopsy individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562968
sample_title: Sample347 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind318; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample348 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample348 [Rectal biopsy] Rectal biopsy individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample348 [Rectal biopsy] Rectal biopsy individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample348 [Rectal biopsy] Rectal biopsy individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample348 [Rectal biopsy] Rectal biopsy individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562969
sample_title: Sample348 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind265; gender: F; age at diagnosis: 17; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample349 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample349 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample349 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample349 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample349 [Rectal biopsy] Rectal biopsy individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562970
sample_title: Sample349 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind285; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample350 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample350 [Rectal biopsy] Rectal biopsy individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample350 [Rectal biopsy] Rectal biopsy individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample350 [Rectal biopsy] Rectal biopsy individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample350 [Rectal biopsy] Rectal biopsy individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562971
sample_title: Sample350 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind266; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample351 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample351 [Rectal biopsy] Rectal biopsy individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample351 [Rectal biopsy] Rectal biopsy individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample351 [Rectal biopsy] Rectal biopsy individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample351 [Rectal biopsy] Rectal biopsy individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562972
sample_title: Sample351 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind267; gender: F; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample352 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample352 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample352 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample352 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample352 [Rectal biopsy] Rectal biopsy individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562973
sample_title: Sample352 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind288; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample353 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample353 [Rectal biopsy] Rectal biopsy individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample353 [Rectal biopsy] Rectal biopsy individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample353 [Rectal biopsy] Rectal biopsy individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
- Sample353 [Rectal biopsy] Rectal biopsy individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pedia...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562974
sample_title: Sample353 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind268; gender: M; age at diagnosis: 16; time of sampling: Baseline; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample354 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample354 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample354 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample354 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample354 [Rectal biopsy] Rectal biopsy individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562975
sample_title: Sample354 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind289; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample355 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample355 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample355 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample355 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample355 [Rectal biopsy] Rectal biopsy individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562976
sample_title: Sample355 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind290; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample356 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample356 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample356 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample356 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample356 [Rectal biopsy] Rectal biopsy individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562977
sample_title: Sample356 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind292; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample357 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample357 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample357 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample357 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample357 [Rectal biopsy] Rectal biopsy individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562978
sample_title: Sample357 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind293; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample358 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample358 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample358 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample358 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample358 [Rectal biopsy] Rectal biopsy individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562979
sample_title: Sample358 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind330; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample359 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample359 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample359 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample359 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample359 [Rectal biopsy] Rectal biopsy individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562980
sample_title: Sample359 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind350; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample360 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample360 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample360 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample360 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample360 [Rectal biopsy] Rectal biopsy individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562981
sample_title: Sample360 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind351; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample361 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample361 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample361 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample361 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample361 [Rectal biopsy] Rectal biopsy individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562982
sample_title: Sample361 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind341; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample362 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample362 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample362 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample362 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample362 [Rectal biopsy] Rectal biopsy individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562983
sample_title: Sample362 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind294; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample363 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample363 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample363 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample363 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample363 [Rectal biopsy] Rectal biopsy individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562984
sample_title: Sample363 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind297; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample364 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample364 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample364 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample364 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample364 [Rectal biopsy] Rectal biopsy individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562985
sample_title: Sample364 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind296; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample365 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample365 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample365 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample365 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample365 [Rectal biopsy] Rectal biopsy individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562986
sample_title: Sample365 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind295; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample366 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample366 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample366 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample366 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample366 [Rectal biopsy] Rectal biopsy individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562987
sample_title: Sample366 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind305; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample367 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample367 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample367 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample367 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample367 [Rectal biopsy] Rectal biopsy individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562988
sample_title: Sample367 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind342; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample368 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample368 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample368 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample368 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample368 [Rectal biopsy] Rectal biopsy individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562989
sample_title: Sample368 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind337; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample369 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample369 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample369 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample369 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample369 [Rectal biopsy] Rectal biopsy individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562990
sample_title: Sample369 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind343; gender: F; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample370 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample370 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample370 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample370 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample370 [Rectal biopsy] Rectal biopsy individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562991
sample_title: Sample370 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind346; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample371 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample371 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample371 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample371 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample371 [Rectal biopsy] Rectal biopsy individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562992
sample_title: Sample371 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind336; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample372 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample372 [Rectal biopsy] Rectal biopsy individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample372 [Rectal biopsy] Rectal biopsy individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample372 [Rectal biopsy] Rectal biopsy individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample372 [Rectal biopsy] Rectal biopsy individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562993
sample_title: Sample372 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind269; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample373 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample373 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample373 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample373 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample373 [Rectal biopsy] Rectal biopsy individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562994
sample_title: Sample373 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind298; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample374 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample374 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample374 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample374 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample374 [Rectal biopsy] Rectal biopsy individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562995
sample_title: Sample374 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind302; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample375 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample375 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample375 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample375 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample375 [Rectal biopsy] Rectal biopsy individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562996
sample_title: Sample375 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind345; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample376 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample376 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample376 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample376 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample376 [Rectal biopsy] Rectal biopsy individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562997
sample_title: Sample376 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind344; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample377 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample377 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample377 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample377 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample377 [Rectal biopsy] Rectal biopsy individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562998
sample_title: Sample377 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind328; gender: F; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample378 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample378 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample378 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample378 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample378 [Rectal biopsy] Rectal biopsy individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4562999
sample_title: Sample378 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind332; gender: M; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample379 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample379 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample379 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample379 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample379 [Rectal biopsy] Rectal biopsy individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563000
sample_title: Sample379 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind299; gender: M; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample380 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample380 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample380 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample380 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample380 [Rectal biopsy] Rectal biopsy individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563001
sample_title: Sample380 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind306; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample381 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample381 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample381 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample381 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample381 [Rectal biopsy] Rectal biopsy individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563002
sample_title: Sample381 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind303; gender: M; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample382 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample382 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample382 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample382 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample382 [Rectal biopsy] Rectal biopsy individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563003
sample_title: Sample382 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind286; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample383 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample383 [Rectal biopsy] Rectal biopsy individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample383 [Rectal biopsy] Rectal biopsy individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample383 [Rectal biopsy] Rectal biopsy individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample383 [Rectal biopsy] Rectal biopsy individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563004
sample_title: Sample383 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind270; gender: M; age at diagnosis: 4; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample384 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample384 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample384 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample384 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample384 [Rectal biopsy] Rectal biopsy individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563005
sample_title: Sample384 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind349; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample385 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample385 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample385 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample385 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample385 [Rectal biopsy] Rectal biopsy individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563006
sample_title: Sample385 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind338; gender: M; age at diagnosis: 11; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample386 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample386 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample386 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample386 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample386 [Rectal biopsy] Rectal biopsy individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563007
sample_title: Sample386 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind281; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample387 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample387 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample387 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample387 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample387 [Rectal biopsy] Rectal biopsy individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563008
sample_title: Sample387 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind282; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample388 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample388 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample388 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample388 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample388 [Rectal biopsy] Rectal biopsy individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563009
sample_title: Sample388 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind348; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample389 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample389 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample389 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample389 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample389 [Rectal biopsy] Rectal biopsy individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563010
sample_title: Sample389 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind347; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample390 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample390 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample390 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample390 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample390 [Rectal biopsy] Rectal biopsy individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563011
sample_title: Sample390 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind300; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample391 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample391 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample391 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample391 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample391 [Rectal biopsy] Rectal biopsy individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563012
sample_title: Sample391 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind301; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample392 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample392 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample392 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample392 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample392 [Rectal biopsy] Rectal biopsy individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563013
sample_title: Sample392 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind321; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample393 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample393 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample393 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample393 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample393 [Rectal biopsy] Rectal biopsy individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563014
sample_title: Sample393 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind339; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample394 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample394 [Rectal biopsy] Rectal biopsy individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample394 [Rectal biopsy] Rectal biopsy individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample394 [Rectal biopsy] Rectal biopsy individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample394 [Rectal biopsy] Rectal biopsy individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563015
sample_title: Sample394 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind271; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample395 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample395 [Rectal biopsy] Rectal biopsy individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample395 [Rectal biopsy] Rectal biopsy individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample395 [Rectal biopsy] Rectal biopsy individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample395 [Rectal biopsy] Rectal biopsy individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563016
sample_title: Sample395 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind272; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample396 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample396 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample396 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample396 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample396 [Rectal biopsy] Rectal biopsy individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563017
sample_title: Sample396 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind287; gender: F; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample397 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample397 [Rectal biopsy] Rectal biopsy individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample397 [Rectal biopsy] Rectal biopsy individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample397 [Rectal biopsy] Rectal biopsy individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample397 [Rectal biopsy] Rectal biopsy individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563018
sample_title: Sample397 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind273; gender: M; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample398 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample398 [Rectal biopsy] Rectal biopsy individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample398 [Rectal biopsy] Rectal biopsy individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample398 [Rectal biopsy] Rectal biopsy individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample398 [Rectal biopsy] Rectal biopsy individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563019
sample_title: Sample398 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind274; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample399 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample399 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample399 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample399 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample399 [Rectal biopsy] Rectal biopsy individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563020
sample_title: Sample399 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind307; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample400 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample400 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample400 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample400 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample400 [Rectal biopsy] Rectal biopsy individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563021
sample_title: Sample400 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind311; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample401 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample401 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample401 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample401 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample401 [Rectal biopsy] Rectal biopsy individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563022
sample_title: Sample401 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind304; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample402 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample402 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample402 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample402 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample402 [Rectal biopsy] Rectal biopsy individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563023
sample_title: Sample402 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind308; gender: F; age at diagnosis: 10; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample403 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample403 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample403 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample403 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample403 [Rectal biopsy] Rectal biopsy individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563024
sample_title: Sample403 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind310; gender: F; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample405 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample405 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample405 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample405 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample405 [Rectal biopsy] Rectal biopsy individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563025
sample_title: Sample405 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind309; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample406 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample406 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample406 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample406 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample406 [Rectal biopsy] Rectal biopsy individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563026
sample_title: Sample406 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind320; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample407 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample407 [Rectal biopsy] Rectal biopsy individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample407 [Rectal biopsy] Rectal biopsy individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample407 [Rectal biopsy] Rectal biopsy individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample407 [Rectal biopsy] Rectal biopsy individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563027
sample_title: Sample407 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind276; gender: M; age at diagnosis: 8; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample408 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample408 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample408 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample408 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample408 [Rectal biopsy] Rectal biopsy individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563028
sample_title: Sample408 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind334; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample409 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample409 [Rectal biopsy] Rectal biopsy individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample409 [Rectal biopsy] Rectal biopsy individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample409 [Rectal biopsy] Rectal biopsy individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample409 [Rectal biopsy] Rectal biopsy individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563029
sample_title: Sample409 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind277; gender: M; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample410 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample410 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample410 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample410 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample410 [Rectal biopsy] Rectal biopsy individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563030
sample_title: Sample410 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind331; gender: F; age at diagnosis: 9; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample411 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample411 [Rectal biopsy] Rectal biopsy individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample411 [Rectal biopsy] Rectal biopsy individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample411 [Rectal biopsy] Rectal biopsy individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample411 [Rectal biopsy] Rectal biopsy individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563031
sample_title: Sample411 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind278; gender: M; age at diagnosis: 12; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample412 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample412 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample412 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample412 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
- Sample412 [Rectal biopsy] Rectal biopsy individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563032
sample_title: Sample412 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind313; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample413 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample413 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample413 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample413 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample413 [Rectal biopsy] Rectal biopsy individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563033
sample_title: Sample413 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind312; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample414 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample414 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample414 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample414 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample414 [Rectal biopsy] Rectal biopsy individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563034
sample_title: Sample414 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind325; gender: M; age at diagnosis: 14; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample415 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample415 [Rectal biopsy] Rectal biopsy individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample415 [Rectal biopsy] Rectal biopsy individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample415 [Rectal biopsy] Rectal biopsy individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample415 [Rectal biopsy] Rectal biopsy individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563035
sample_title: Sample415 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind279; gender: F; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample416 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample416 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample416 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample416 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
- Sample416 [Rectal biopsy] Rectal biopsy individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatr...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563036
sample_title: Sample416 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind323; gender: F; age at diagnosis: 7; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample417 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample417 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample417 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample417 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
- Sample417 [Rectal biopsy] Rectal biopsy individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563037
sample_title: Sample417 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind326; gender: F; age at diagnosis: 13; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample418 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample418 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample418 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample418 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
- Sample418 [Rectal biopsy] Rectal biopsy individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563038
sample_title: Sample418 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind327; gender: F; age at diagnosis: 6; time of sampling: 52wk FU; initial treatment: 5ASA; colectomy: 0; disease: pediatric ulcerative colitis
Sample419 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample419 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample419 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample419 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample419 [Rectal biopsy] Rectal biopsy individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563039
sample_title: Sample419 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind322; gender: M; age at diagnosis: 16; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample420 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample420 [Rectal biopsy] Rectal biopsy individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample420 [Rectal biopsy] Rectal biopsy individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample420 [Rectal biopsy] Rectal biopsy individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample420 [Rectal biopsy] Rectal biopsy individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563040
sample_title: Sample420 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind280; gender: F; age at diagnosis: 17; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
Sample421 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample421 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample421 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample421 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
- Sample421 [Rectal biopsy] Rectal biopsy individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediat...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563041
sample_title: Sample421 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind324; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-Oral; colectomy: 0; disease: pediatric ulcerative colitis
Sample422 [Rectal biopsy]
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- Sample422 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample422 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- Sample422 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
- Sample422 [Rectal biopsy] Rectal biopsy individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatri...
Source metadata
- Source name
- Rectal biopsy
- Characteristics
- individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM4563042
sample_title: Sample422 [Rectal biopsy]
source_name: Rectal biopsy
characteristics: individual: Ind335; gender: M; age at diagnosis: 15; time of sampling: 52wk FU; initial treatment: CS-IV; colectomy: 0; disease: pediatric ulcerative colitis