GSE15573

Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis patients

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 33 samples
Specimen: Biofluid
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Teixeira VH, Olaso R, Martin-Magniette M, Jacq L, Oliveira CR, Lasbleiz S, Hilliquin P, Gut I, Cornelis F, Petit-Teixeira E
Contact name: Robert Olaso
Submission date: 2009-04-06
Last update: 2013-02-15
Organization: CEA IG
Department: CNG Technology Department
Public date: 2009-09-03
Experiment types: Expression profiling by array
Platforms: GPL6102 Illumina human-6 v2.0 expression beadchip
Series type: Series
SubSeries: Not available
BioProject: PRJNA115749

Summary

Large-scale gene expression profiling of peripheral blood mononuclear cells from Rheumatoid Arthritis (RA) patients could provide a molecular description that reflects the contribution of diverse cellular responses associated with this disease. The aim of our study is to identify peripheral blood gene expression profiles for RA patients, using Illumina technology, to gain insights into RA molecular mechanisms. The Illumina Human-6v2 Expression BeadChips were used for a complete genome-wide transcript profiling of peripheral blood mononuclear cells from 18 RA patients and 15 Controls. Differential analysis per gene was performed with one-way analysis of variance (ANOVA) and P values were adjusted to control the False Discovery Rate (FDR<5%). Genes differentially expressed at significant level between patients and controls were analyzed using Gene Ontology (GO) in the PANTHER database to identify biological processes. A differentially expression of 339 Reference Sequence genes (238 down-regulated and 101 up-regulated) between the two groups was observed. We identified a remarkably elevated expression of a spectrum of genes involved in Immunity and Defense in peripheral blood mononuclear cells of RA patients compared to Controls. This result is confirmed by GO analysis, suggesting that these genes could be activated systemically in RA. No significant down-regulated ontology groups were found. Microarrays data were validated by real time PCR in a set of nine genes showing a high degree of correlation. Our study highlighted several new genes that could contribute in the identification of innovative clinical biomarkers for diagnostic procedures and therapeutic intervention. Further studies on larger scale groups of patients should be performed with the same technology to replicate these results and to allow clinical stratification.

Overall design

33 samples analyzed corresponding to 18 Rheumatoid Arthritis Patients and 15 Controls

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 33 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 9 linked publications 9 DOIs Primary publication Transcriptome analysis describing new immunity and defense genes in peripheral blood mononuclear cells of rheumatoid arthritis patients. PloS one, 2009 PubMed DOI Related publications SLAM receptors regulate immune checkpoints via SAP and EAT- 2 in rheumatoid arthritis: association with disease activity. Clinical rheumatology, 2025 PubMed DOI Identification and Experimental Verification of PDK4 as a Potential Biomarker for Diagnosis and Treatment in Rheumatoid Arthritis. Molecular biotechnology, 2025 PubMed DOI Identification of immunological characteristics and cuproptosis-related molecular clusters in Rheumatoid arthritis. International immunopharmacology, 2023 PubMed DOI PCBP1 is associated with rheumatoid arthritis by affecting RNA products of genes involved in immune response in Th1 cells. Scientific reports, 2022 PubMed DOI Biosemantics guided gene expression profiling of Sjögren's syndrome: a comparative analysis with systemic lupus erythematosus and rheumatoid arthritis. Arthritis research & therapy, 2017 PubMed DOI Targeting ORM1-CCR5 axis inhibits the aggressive phenotype of synovial fibroblasts and alleviates RA. Open medicine (Warsaw, Poland), 2026 PubMed DOI Identifying Diagnostic Biomarkers for Electroacupuncture Treatment of Rheumatoid Arthritis Using Bioinformatic Analysis and Machine Learning Algorithms. Journal of pain research, 2025 PubMed DOI Shared gene signatures between rheumatoid arthritis and Sjögren's syndrome. American journal of clinical and experimental immunology, 2026 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Rheumatoid arthritis Disease context came from Normalization rules.
Likely case group Rheumatoid arthritis 18 samples
Likely control group Control 15 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
Interpreted disease metadata: Rheumatoid arthritis.
Processed data is available for downstream review.
External evidence: PubMed links 9 publications; 9 DOIs available: PMID 19710928, PMID 28818099, PMID 35589811, PMID 37595490, PMID 39466354.
Publication context: Transcriptome analysis describing new immunity and defense genes in peripheral blood mononuclear cells of rheumatoid arthritis patients.. PloS one, 2009. PMID 19710928. DOI 10.1371/journal.pone.0006803.
Publication context: Biosemantics guided gene expression profiling of Sjögren's syndrome: a comparative analysis with systemic lupus erythematosus and rheumatoid arthritis.. Arthritis research & therapy, 2017. PMID 28818099. DOI 10.1186/s13075-017-1400-3.
Publication context: PCBP1 is associated with rheumatoid arthritis by affecting RNA products of genes involved in immune response in Th1 cells.. Scientific reports, 2022. PMID 35589811. DOI 10.1038/s41598-022-12594-7.
Publication context: 6 additional linked PubMed publications are available.

Cautions

Downgraded for tissue search because it is a biofluid cohort.
Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

154 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source blood GSM389703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389705 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389706 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389707 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389708 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389709 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389710 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389711 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389712 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389713 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389715 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389718 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389721 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389724 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389728 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389729 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389733 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389734 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

anatomical_source blood GSM389735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence blood tissue: Blood sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE15573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE15573 dataset_title: Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis patients organism: Homo sapiens assay_type: m... keyword match keyword match: microarray

cell_population peripheral blood mononuclear cells GSM389703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R021 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 71; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R019 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 72; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389705 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R006 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 67; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389706 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R024 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389707 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R062 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389708 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R022 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389709 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R033 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389710 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R004 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 49; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389711 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R025 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 69; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389712 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R069 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 45; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389713 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R014 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 61; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R049 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389715 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R068 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 47; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R041 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R029 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 58; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389718 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R016 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 47; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R055 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 80; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R009 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 48; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389721 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R060 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 62; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R057 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 57; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R038 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 53; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389724 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R065 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 46; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R052 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R028 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 64; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R059 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389728 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R031 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 66; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389729 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R084 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 51; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R083 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 58; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R058 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 72; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R044 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389733 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R030 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389734 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R017 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 55; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

cell_population peripheral blood mononuclear cells GSM389735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R054 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary cell population match: peripheral mononuclear blood cells

disease rheumatoid arthritis GSE15573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis dataset_accession: GSE15573 dataset_title: Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis patients organism: Homo sapiens assay_type: m... controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R021 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 71; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R019 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 72; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389706 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R024 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389708 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R022 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389711 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R025 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 69; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R049 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R041 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R029 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 58; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R055 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 80; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389721 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R060 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 62; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R057 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 57; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389724 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R065 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 46; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R028 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 64; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R059 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R083 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 58; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R058 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 72; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389733 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 06R030 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

disease rheumatoid arthritis GSM389735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence rheumatoid arthritis 07R054 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary disease match: rheumatoid arthritis

organism Homo sapiens GSE15573 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE15573 dataset_title: Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis patients organism: Homo sapiens assay_type: m... keyword match keyword match: homo sapiens

specimen_material PBMC preparation GSM389703 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R021 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 71; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389704 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R019 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 72; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389705 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R006 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 67; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389706 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R024 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389707 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R062 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389708 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R022 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389709 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R033 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389710 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R004 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 49; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389711 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R025 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 69; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389712 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R069 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 45; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389713 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R014 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 61; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R049 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389715 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R068 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 47; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R041 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R029 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 58; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389718 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R016 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 47; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R055 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 80; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R009 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 48; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389721 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R060 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 62; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389722 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R057 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 57; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R038 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 53; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389724 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R065 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 46; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R052 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R028 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 64; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R059 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389728 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R031 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 66; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389729 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R084 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 51; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R083 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 58; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R058 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 72; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R044 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389733 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R030 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389734 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 06R017 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 55; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

specimen_material PBMC preparation GSM389735 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence peripheral mononuclear blood cells 07R054 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary specimen material match: peripheral mononuclear blood cells

tissue blood GSE15573 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood dataset_accession: GSE15573 dataset_title: Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis patients organism: Homo sapiens assay_type: m... controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389703 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R021 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 71; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389704 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R019 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 72; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389705 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R006 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 67; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389706 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R024 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389707 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R062 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389708 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R022 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389709 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R033 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389710 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R004 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 49; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389711 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R025 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 69; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389712 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R069 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 45; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389713 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R014 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 61; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389714 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R049 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389715 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R068 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 47; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R041 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 60; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389717 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R029 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 58; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389718 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R016 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 47; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389719 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R055 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 80; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389720 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R009 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 48; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389721 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R060 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 62; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389722 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R057 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 57; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389723 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R038 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 53; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389724 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R065 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 46; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389725 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R052 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 49; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389726 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R028 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 64; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389727 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R059 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 52; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389728 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R031 Control Peripheral Mononuclear Blood Cells status: Control; gender: Male; age: 66; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389729 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R084 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 51; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389730 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R083 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 58; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389731 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R058 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Male; age: 72; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389732 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R044 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389733 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R030 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 54; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389734 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 06R017 Control Peripheral Mononuclear Blood Cells status: Control; gender: Female; age: 55; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

tissue blood GSM389735 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence blood 07R054 RA Peripheral Mononuclear Blood Cells status: Rheumatoid Arthritis Patient; gender: Female; age: 63; tissue: Blood controlled vocabulary controlled vocabulary tissue match: blood

Sample Group Preview

33 rows shown Show Hide

Study totals: Case 18 | Control 15 | Unassigned 0 | Excluded 0 | Ambiguous 0 33 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Rheumatoid arthritis	Case	GSM389703	06R021 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 71; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389704	06R019 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 72; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389706	06R024 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 60; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389708	06R022 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Male; Age: 49; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389711	06R025 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 69; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389714	06R049 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 52; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389716	06R041 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 60; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389717	06R029 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 58; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389719	07R055 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Male; Age: 80; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389721	07R060 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 62; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389722	07R057 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 57; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389724	07R065 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 46; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389726	06R028 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 64; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389727	07R059 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 52; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389730	07R083 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Male; Age: 58; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389731	07R058 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Male; Age: 72; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389733	06R030 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 54; Tissue: Blood	Explicit sample label case marker detected.
Rheumatoid arthritis	Case	GSM389735	07R054 RA	Peripheral Mononuclear Blood Cells Status: Rheumatoid Arthritis Patient; Gender: Female; Age: 63; Tissue: Blood	Explicit sample label case marker detected.
Control	Control	GSM389705	06R006 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Male; Age: 67; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389707	07R062 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 63; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389709	06R033 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 54; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389710	06R004 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 49; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389712	07R069 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Male; Age: 45; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389713	06R014 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 61; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389715	07R068 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 47; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389718	06R016 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Male; Age: 47; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389720	06R009 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 48; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389723	06R038 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 53; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389725	06R052 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Male; Age: 49; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389728	06R031 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Male; Age: 66; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389729	07R084 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 51; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389732	06R044 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 54; Tissue: Blood	Sample-local control marker detected.
Control	Control	GSM389734	06R017 Control	Peripheral Mononuclear Blood Cells Status: Control; Gender: Female; Age: 55; Tissue: Blood	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Primary publication

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort