Matching samples

GSE156453 · In vivo gene expression profile of human intestinal epithelial cells: from the viewpoint of drug metabolism and pharmacokinetics

Download matching samples CSV

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

26 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (26)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM4731830

Uncertain

Duodenum-1 [TMG126_30_S37]

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Duodenum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 53; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731830
sample_title: Duodenum-1 [TMG126_30_S37]
source_name: Duodenum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 53; Sex: male; race: Japanese

GSM4731831

Uncertain

Duodenum-2 [TMG126_35_S41]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Duodenum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 42; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731831
sample_title: Duodenum-2 [TMG126_35_S41]
source_name: Duodenum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 42; Sex: male; race: Japanese

GSM4731832

Uncertain

Duodenum-3 [TMG126_36_S42]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Duodenum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731832
sample_title: Duodenum-3 [TMG126_36_S42]
source_name: Duodenum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese

GSM4731833

Uncertain

Duodenum-4 [TMG126_43_S46]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Duodenum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731833
sample_title: Duodenum-4 [TMG126_43_S46]
source_name: Duodenum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese

GSM4731834

Uncertain

Ileum-1 [TMG126_28_S25]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 33; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731834
sample_title: Ileum-1 [TMG126_28_S25]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 33; Sex: male; race: Japanese

GSM4731835

Uncertain

Ileum-2 [TMG126_31_S38]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731835
sample_title: Ileum-2 [TMG126_31_S38]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese

GSM4731836

Uncertain

Ileum-3 [TMG126_37_S27]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731836
sample_title: Ileum-3 [TMG126_37_S27]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese

GSM4731837

Uncertain

Ileum-4 [TMG126_40_S31]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731837
sample_title: Ileum-4 [TMG126_40_S31]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese

GSM4731838

Uncertain

Ileum-5 [TMG126_45_S29]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731838
sample_title: Ileum-5 [TMG126_45_S29]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese

GSM4731839

Uncertain

Ileum-6 [TMG126_47_S33]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 23; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731839
sample_title: Ileum-6 [TMG126_47_S33]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 23; Sex: male; race: Japanese

GSM4731840

Uncertain

Ileum-7 [TMG126_49_S35]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731840
sample_title: Ileum-7 [TMG126_49_S35]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese

GSM4731841

Uncertain

Colon-1 [TMG126_29_S26]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 33; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731841
sample_title: Colon-1 [TMG126_29_S26]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 33; Sex: male; race: Japanese

GSM4731842

Uncertain

Colon-2 [TMG126_32_S39]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 22; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731842
sample_title: Colon-2 [TMG126_32_S39]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 22; Sex: male; race: Japanese

GSM4731843

Uncertain

Colon-3 [TMG126_33_S43]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 22; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731843
sample_title: Colon-3 [TMG126_33_S43]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 22; Sex: male; race: Japanese

GSM4731844

Uncertain

Colon-4 [TMG126_34_S40]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 40; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731844
sample_title: Colon-4 [TMG126_34_S40]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 40; Sex: male; race: Japanese

GSM4731845

Uncertain

Colon-5 [TMG126_38_S28]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731845
sample_title: Colon-5 [TMG126_38_S28]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese

GSM4731846

Uncertain

Colon-6 [TMG126_41_S32]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731846
sample_title: Colon-6 [TMG126_41_S32]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese

GSM4731847

Uncertain

Colon-7 [TMG126_44_S47]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 27; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731847
sample_title: Colon-7 [TMG126_44_S47]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 27; Sex: male; race: Japanese

GSM4731848

Uncertain

Colon-8 [TMG126_46_S30]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731848
sample_title: Colon-8 [TMG126_46_S30]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese

GSM4731849

Uncertain

Colon-9 [TMG126_48_S34]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 23; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731849
sample_title: Colon-9 [TMG126_48_S34]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 23; Sex: male; race: Japanese

GSM4731850

Uncertain

Colon-10 [TMG126_50_S36]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Colon
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731850
sample_title: Colon-10 [TMG126_50_S36]
source_name: Colon
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese

GSM4731851

Uncertain

Rectum-1 [TMG126_39_S44]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Rectum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731851
sample_title: Rectum-1 [TMG126_39_S44]
source_name: Rectum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 54; Sex: male; race: Japanese

GSM4731852

Uncertain

Rectum-2 [TMG126_42_S45]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Rectum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731852
sample_title: Rectum-2 [TMG126_42_S45]
source_name: Rectum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 51; Sex: male; race: Japanese

GSM4731859

Uncertain

(repeated) Duodenum-2 [TMG126_1000035_S47]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Duodenum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 42; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731859
sample_title: (repeated) Duodenum-2 [TMG126_1000035_S47]
source_name: Duodenum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 42; Sex: male; race: Japanese

GSM4731860

Uncertain

(repeated) Ileum-5 [TMG126_1000045_S35]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731860
sample_title: (repeated) Ileum-5 [TMG126_1000045_S35]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 44; Sex: male; race: Japanese

GSM4731861

Uncertain

(repeated) Ileum-7 [TMG126_1000049_S41]

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Ileum
Characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731861
sample_title: (repeated) Ileum-7 [TMG126_1000049_S41]
source_name: Ileum
characteristics: disease state: Crohn’s Disease (CD) or Ulcerative colitis (UC); sampling region: non-inflammatory area; age (year): 29; Sex: female; race: Japanese

Excluded samples (7)

GSM4731853

Excluded

Caco-2-1 [TMG126_51_S22]

Excluded by the study grouping rules. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement. Study role: Normalized exclusion flag detected: cell line.

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-1 [TMG126_51_S22] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-1 [TMG126_51_S22] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Caco-2
Characteristics: cell line: Caco-2; cell type: Colon-cancer cell line
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731853
sample_title: Caco-2-1 [TMG126_51_S22]
source_name: Caco-2
characteristics: cell line: Caco-2; cell type: Colon-cancer cell line

GSM4731854

Excluded

Caco-2-2 [TMG126_52_S23]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-2 [TMG126_52_S23] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-2 [TMG126_52_S23] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Caco-2
Characteristics: cell line: Caco-2; cell type: Colon-cancer cell line
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731854
sample_title: Caco-2-2 [TMG126_52_S23]
source_name: Caco-2
characteristics: cell line: Caco-2; cell type: Colon-cancer cell line

GSM4731855

Excluded

Caco-2-3 [TMG126_53_S24]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-3 [TMG126_53_S24] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- Caco-2-3 [TMG126_53_S24] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Caco-2
Characteristics: cell line: Caco-2; cell type: Colon-cancer cell line
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731855
sample_title: Caco-2-3 [TMG126_53_S24]
source_name: Caco-2
characteristics: cell line: Caco-2; cell type: Colon-cancer cell line

GSM4731856

Excluded

undifferentiated iPS cell-1 [TMG126_25_S6]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-1 [TMG126_25_S6] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-1 [TMG126_25_S6] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: iPS-cell (YOW)
Characteristics: cell line: YOW; cell type: undifferentiated iPS-cells
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731856
sample_title: undifferentiated iPS cell-1 [TMG126_25_S6]
source_name: iPS-cell (YOW)
characteristics: cell line: YOW; cell type: undifferentiated iPS-cells

GSM4731857

Excluded

undifferentiated iPS cell-2 [TMG126_26_S12]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-2 [TMG126_26_S12] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-2 [TMG126_26_S12] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: iPS-cell (YOW)
Characteristics: cell line: YOW; cell type: undifferentiated iPS-cells
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731857
sample_title: undifferentiated iPS cell-2 [TMG126_26_S12]
source_name: iPS-cell (YOW)
characteristics: cell line: YOW; cell type: undifferentiated iPS-cells

GSM4731858

Excluded

undifferentiated iPS cell-3 [TMG126_27_S18]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-3 [TMG126_27_S18] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- undifferentiated iPS cell-3 [TMG126_27_S18] iPS-cell (YOW) cell line: YOW; cell type: undifferentiated iPS-cells
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: iPS-cell (YOW)
Characteristics: cell line: YOW; cell type: undifferentiated iPS-cells
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731858
sample_title: undifferentiated iPS cell-3 [TMG126_27_S18]
source_name: iPS-cell (YOW)
characteristics: cell line: YOW; cell type: undifferentiated iPS-cells

GSM4731862

Excluded

(repeated) Caco-2-2 [TMG126_1000052_S29]

Requirements and decision evidence

Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Case: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- (repeated) Caco-2-2 [TMG126_1000052_S29] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
Control: excluded sample type excludes: cell line, organoid, xenograft — Does not meet requirement
- Supported by the indexed evidence.
- The reported value differs from the selected requirement.
- (repeated) Caco-2-2 [TMG126_1000052_S29] Caco-2 cell line: Caco-2; cell type: Colon-cancer cell line
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.

Source metadata

Source name: Caco-2
Characteristics: cell line: Caco-2; cell type: Colon-cancer cell line
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM4731862
sample_title: (repeated) Caco-2-2 [TMG126_1000052_S29]
source_name: Caco-2
characteristics: cell line: Caco-2; cell type: Colon-cancer cell line