GSE157020

TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

30 case / 0 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 30 samples
Specimen: Biopsy
Reported/interpreted study design: Unclear study design Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Massimino L, Lamparelli LA, Vetrano S, Danese S
Contact name: Luca Massimino
Submission date: 2020-08-27
Last update: 2023-01-05
Organization: Ospedale San Raffaele
Department: Gastroenterology
Public date: 2023-01-04
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL18573 Illumina NextSeq 500 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA659792

Summary

BACKGROUND AND AIMS: Perianal fistula represents one of the most important complications in Crohn’s Disease (CD). Epithelial-to-mesenchymal transition (EMT) has been demonstrated to play a major role in the pathogenesis, however the mechanisms driving EMT need to be clarified. Significant alterations in the tissue structural composition occur in the fistula, but how these changes promote EMT was not addressed. We aim to explore the relevance of TSG-6, a stabilizer of extracellular matrix, in the fistula pathogenesis. METHODS: Intestinal surgical specimens from perianal fistula tissue and surrounding region of fistulizing CD were analyzed histologically and by RNA sequencing (RNA-seq). Significantly modulated genes and TSG-6 expression were validated by RT-PCR, WB and immunofluorescence assays [N=20]. TSG-6 expression was reconstituted in Caco-2 cell line and primary perifistula-derived fibroblasts, and proliferative and migratory assays were performed. RESULTS: A marked different organization of extracellular matrix was found across fistula and perifistula regions with an increased expression of integrins, hyaluronan synthases, TSG-6 and MMPs in the fistula. TSG-6 overexpression in Caco-2 cells reduced proliferation, promoted the EMT transcription factor SNAIL, and, in co-stimulation with TGFβ1, migration. The acquisition of TSG-6 increased SNAI1 and hyaluronan synthases levels, and led to activated phenotype of perifistula-derived fibroblasts. Positive Pearson correlation was observed between TSG-6 expression and mechanosensitive proteins in fistula tissue. CONCLUSIONS: By mediating changes in the extracellular matrix organization, TSG-6 triggers the EMT transcription factor SNAIL through the activation of mechanosensitive proteins. These data point to TSG-6 as a new potential target for the treatment of perianal fistula.

Overall design

6x Healthy with fistule, 6x Healthy with perifistule, 9x Crohn's with fistule, 9x Crohn's with perifistule.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 30 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 1 linked publication 1 DOI Primary publication Dysfunctional Extracellular Matrix Remodeling Supports Perianal Fistulizing Crohn's Disease by a Mechanoregulated Activation of the Epithelial-to-Mesenchymal Transition. Cellular and molecular gastroenterology and hepatology, 2023 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

93 pts

Clarity: 93%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Only one side of the comparison is clearly grouped. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Not ready

55% DE readiness

Contrast completeness

10/25 pts

Only one side of the contrast is present; downstream DE needs both groups.

Minimum group size

0/20 pts

Minimum group size cannot be evaluated until a complete contrast exists.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

0/10 pts

Critical warnings must be resolved before downstream analysis.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No complete case/control contrast is available.
Critical dataset warnings must be resolved.

Next Steps

Resolve critical warnings before downstream analysis.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Blocked

No complete case/control grouping exists yet.

Review the sample grouping table and assign both case and control groups.

Minimum sample count met

Blocked

At least one group has fewer than 2 samples.

Choose a larger dataset or merge only scientifically valid groups.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

Analysis preparation checklist contains blocked items.

No complete case/control or treatment/control contrast is available.

At least one comparison group has fewer than two samples.

Critical dataset warnings are present.

Study design is model-system or unclear and should be reviewed before analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Crohn's disease Disease context came from Normalization rules.
Likely case group Crohn's disease 30 samples
Likely control group No control group detected 0 samples

Intent Interpretation

Downgrade or exclusion reason Comparison: Unclear study design. Specimen: Biopsy. Comparison suitability: 0%. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Crohn's disease.
Processed data is available for downstream review.
External evidence: PubMed links 1 publication; 1 DOI available: PMID 36521659.
Publication context: Dysfunctional Extracellular Matrix Remodeling Supports Perianal Fistulizing Crohn's Disease by a Mechanoregulated Activation of the Epithelial-to-Mesenchymal Transition.. Cellular and molecular gastroenterology and hepatology, 2023. PMID 36521659. DOI 10.1016/j.jcmgh.2022.12.006.

Cautions

Comparison: Unclear study design. Specimen: Biopsy. Comparison suitability: 0%.
Downgraded for tissue search because study design or specimen source is unclear.
Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Missing or unclear metadata. Unclear study design downgraded for patient tissue tumor-vs-normal search intent.
Overall score capped because comparison suitability is weak for the selected search intent.
Missing or unclear metadata. Comparison - Unclear study design. Specimen - Biopsy. Comparison suitability: 0%.
Missing or unclear metadata. Downgraded for tissue search because study design or specimen source is unclear.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

No clear control group was detected from normalized metadata.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.
Patient-tissue tumor-normal intent requires clear tumor-normal grouping.

Normalized Fields

154 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source ileum GSM4750933 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750934 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750935 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750936 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750937 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750938 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750939 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750940 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750941 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750942 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750943 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750944 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750945 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750947 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750948 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750949 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750950 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750951 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750952 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750953 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750954 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750955 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750956 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750957 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750958 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750959 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750960 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750961 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source ileum GSM4750962 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ileum tissue: Ileum biopsy sample-anatomical-source-v1 sample-local anatomical source

assay_type bulk RNA-seq GSE157020 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE157020 dataset_title: TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition organism: Hom... keyword match keyword match: bulk rna-seq

collection_method biopsy GSM4750933 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F2_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750934 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F6_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750935 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F8_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750936 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F10_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750937 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F14_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750938 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F16_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750939 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F20_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750940 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F22_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750941 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F26_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750942 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF2_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750943 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF6_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750944 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF7_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF8_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750946 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF10_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF16_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF20_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF22_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF26_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750951 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F28_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750952 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F11_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750953 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F13_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750954 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F17_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750955 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F18_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750956 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F21_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750957 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF28_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF11_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750959 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF13_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750960 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF17_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750961 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF18_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM4750962 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF21_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary collection method match: biopsy

disease Crohn's disease GSE157020 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE157020 dataset_title: TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition organism: Hom... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750933 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F2_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750934 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F6_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750935 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F8_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750936 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F10_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750937 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F14_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750938 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F16_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750939 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F20_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750940 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F22_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750941 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F26_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750942 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF2_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750943 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF6_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750944 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF7_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750945 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF8_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750946 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF10_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750947 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF16_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750948 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF20_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750949 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF22_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750950 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF26_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750951 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F28_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750952 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F11_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750953 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F13_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750954 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F17_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750955 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F18_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750956 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease F21_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750957 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF28_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750958 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF11_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750959 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF13_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750960 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF17_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750961 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF18_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM4750962 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease PF21_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE157020 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE157020 dataset_title: TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition organism: Hom... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM4750933 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F2_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750934 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F6_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750935 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F8_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750936 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F10_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750937 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F14_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750938 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F16_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750939 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F20_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750940 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F22_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750941 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F26_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750942 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF2_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750943 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF6_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750944 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF7_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750945 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF8_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750946 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF10_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750947 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF16_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750948 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF20_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750949 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF22_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750950 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF26_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750951 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F28_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750952 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F11_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750953 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F13_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750954 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F17_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750955 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F18_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750956 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy F21_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750957 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF28_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750958 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF11_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750959 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF13_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750960 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF17_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750961 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF18_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM4750962 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy PF21_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary primary tissue match: biopsy

tissue intestine GSE157020 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal dataset_accession: GSE157020 dataset_title: TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition organism: Hom... controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM4750933 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F2_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750934 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F6_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750935 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F8_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750936 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F10_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750937 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F14_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750938 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F16_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750939 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F20_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750940 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F22_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750941 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F26_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750942 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF2_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750943 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF6_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750944 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF7_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750945 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF8_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750946 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF10_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750947 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF16_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750948 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF20_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750949 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF22_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750950 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF26_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750951 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F28_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750952 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F11_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750953 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F13_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750954 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F17_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750955 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F18_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750956 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum F21_Non_CD.Fistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with fistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750957 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF28_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750958 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF11_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750959 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF13_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750960 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF17_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750961 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF18_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

tissue intestine GSM4750962 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ileum PF21_Non_CD.Perifistule Ileum biopsy tissue: Ileum biopsy; diagnosis: Non-Crohn's disease with perifistule controlled vocabulary controlled vocabulary tissue match: ileum

Sample Group Preview

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Study totals: Case 30 | Control 0 | Unassigned 0 | Excluded 0 | Ambiguous 0 30 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Crohn's disease	Case	GSM4750933	F2_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750934	F6_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750935	F8_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750936	F10_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750937	F14_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750938	F16_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750939	F20_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750940	F22_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750941	F26_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750942	PF2_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750943	PF6_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750944	PF7_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750945	PF8_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750946	PF10_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750947	PF16_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750948	PF20_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750949	PF22_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750950	PF26_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750951	F28_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750952	F11_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750953	F13_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750954	F17_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750955	F18_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750956	F21_Non_CD.Fistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with fistule	Case marker detected.
Crohn's disease	Case	GSM4750957	PF28_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750958	PF11_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750959	PF13_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750960	PF17_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750961	PF18_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.
Crohn's disease	Case	GSM4750962	PF21_Non_CD.Perifistule	Ileum biopsy Tissue: Ileum biopsy; Diagnosis: Non-Crohn's disease with perifistule	Case marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Use as Discovery Cohort