GSE169568

BeadChip microarray data of peripheral blood obtained from treatment-näive IBD patients and control individuals

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

110 case / 95 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source
GEO
Assay
microarray
Organism
Homo sapiens
Whole-study samples
205 samples
Specimen
Biofluid
Reported/interpreted study design
Disease/model vs control Design classification does not establish patient pairs.
Comparison type
Tumor vs normal
Contributors
D'Amato M, Halfvarsson J, Lindqvist M, Juzenas S, Franke A
Contact name
Simonas Juzenas
Submission date
2021-03-24
Last update
2023-01-18
Organization
Christian-Albrechts-University of Kiel
Department
Institute of Clinical Molecular Biology
Public date
2022-08-16
Experiment types
Expression profiling by array
Platforms
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Series type
Series
SubSeries
Not available
BioProject
PRJNA717021

Summary

Comperhensive analysis of blood transcriptomes obtained from treatment-näive IBD patients.

Overall design

Total RNA extracted from peripheral blood samples (n = 205) was reverse transcribed and biotin-labeled using the TargetAmp-Nano Labeling Kit for Illumina Expression BeadChip (Epicentre) according to the manufacturer’s protocol. The labeled antisense RNA was hybridized to Human HT-12 v4 BeadChip array (Illumina) following the standard producer’s hybridization protocol. The array imaging was performed on an iScan system (Illumina) according to the standard manufacturer’s protocol.

Source Evidence

4 sources
Source Contribution Status
GEO

Original dataset metadata, sample metadata, source links, and GEO data availability flags.

Sample records
205 GSM samples
 Primary source
recount3

Planned trusted source for processed count availability.

 No match found
Expression Atlas

Planned source for curated expression experiment links.

 No match found
PubMed

Primary GEO citations and related PubMed articles that mention this dataset.

7 linked publications 7 DOIs

Primary publication

  1. Detailed Transcriptional Landscape of Peripheral Blood Points to Increased Neutrophil Activation in Treatment-Naïve Inflammatory Bowel Disease. Journal of Crohn's & colitis, 2022

Related publications

  1. AQP9 and IFITM1 as drivers of immune infiltration and tumor progression in IBD-associated colorectal cancer: from computational insights to experimental validation. Naunyn-Schmiedeberg's archives of pharmacology, 2026
  2. Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease. Computers in biology and medicine, 2025
  3. Identification and validation of coagulation and fibrinolytic-related diagnostic biomarkers for ulcerative colitis by bioinformatics analysis. Medicine, 2024
  4. Identification of Crohn's Disease-Related Biomarkers and Pan-Cancer Analysis Based on Machine Learning. Mediators of inflammation, 2025
  5. Role of Aging in Ulcerative Colitis Pathogenesis: A Focus on ETS1 as a Promising Biomarker. Journal of inflammation research, 2025
  6. Identification of hub genes in peripheral blood and construction of a diagnostic nomogram model in ulcerative colitis. PeerJ, 2025
Available

Metadata Quality Components

Persisted metadata quality

100 pts
Clarity
100%
Weight
100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review
97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

  • Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
  • Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal
Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

  • Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
  • Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
  • Likely case group Ulcerative colitis 110 samples
  • Likely control group Mixed controls 95 samples

Intent Interpretation

  • Downgrade or exclusion reason Downgraded for tissue search because it is a biofluid cohort. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

  • Comparison: Disease/model vs control. Specimen: Biofluid. Comparison suitability: 0%.
  • Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
  • Processed data is available for downstream review.
  • External evidence: PubMed links 7 publications; 7 DOIs available: PMID 35022690, PMID 39252244, PMID 39894009, PMID 39931173, PMID 40224483.
  • Publication context: Detailed Transcriptional Landscape of Peripheral Blood Points to Increased Neutrophil Activation in Treatment-Naïve Inflammatory Bowel Disease.. Journal of Crohn's & colitis, 2022. PMID 35022690. DOI 10.1093/ecco-jcc/jjac003.
  • Publication context: Identification and validation of coagulation and fibrinolytic-related diagnostic biomarkers for ulcerative colitis by bioinformatics analysis.. Medicine, 2024. PMID 39252244. DOI 10.1097/MD.0000000000039552.
  • Publication context: Blood transcriptomics identifies FEZ1 as a potential biomarker for inflammatory bowel disease.. Computers in biology and medicine, 2025. PMID 39894009. DOI 10.1016/j.compbiomed.2025.109742.
  • Publication context: 4 additional linked PubMed publications are available.

Cautions

  • Downgraded for tissue search because it is a biofluid cohort.
  • Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
  • Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
  • Blood, plasma, or serum cohort downgraded because this ranking targets tissue tumor-vs-normal comparisons.
  • Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
  • Overall score capped because comparison suitability is weak for the selected search intent.
  • Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
  • Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Normalized Fields

showing 500 of 614 fields

Sample Group Preview

showing 100 of 205 preview rows Show Hide
Study totals: Case 110 | Control 95 | Unassigned 0 | Excluded 0 | Ambiguous 0 showing 100 of 205 preview rows
Group Role Accession Title Source / characteristics Reason
Ulcerative colitis Case GSM5209430 D5595 Peripheral blood Sex: Male; Age: 39; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209432 D5598 Peripheral blood Sex: Female; Age: 31; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209433 D5599 Peripheral blood Sex: Male; Age: 22; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209436 D5602 Peripheral blood Sex: Female; Age: 30; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209441 D5607 Peripheral blood Sex: Female; Age: 27; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209444 D5610 Peripheral blood Sex: Male; Age: 57; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209446 D5613 Peripheral blood Sex: Female; Age: 20; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209448 D5616 Peripheral blood Sex: Male; Age: 27; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209449 D5617 Peripheral blood Sex: Male; Age: 32; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209451 D5499 Peripheral blood Sex: Female; Age: 35; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209453 D5501 Peripheral blood Sex: Male; Age: 21; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209454 D5502 Peripheral blood Sex: Male; Age: 62; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209455 D5503 Peripheral blood Sex: Female; Age: 41; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209456 D5505 Peripheral blood Sex: Female; Age: 22; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209457 D5506 Peripheral blood Sex: Female; Age: 18; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209458 D5508 Peripheral blood Sex: Male; Age: 20; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209459 D5509 Peripheral blood Sex: Female; Age: 29; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209460 D5510 Peripheral blood Sex: Male; Age: 46; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209463 D5514 Peripheral blood Sex: Male; Age: 32; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209465 D5519 Peripheral blood Sex: Male; Age: 76; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209466 D5521 Peripheral blood Sex: Female; Age: 23; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209472 D5527 Peripheral blood Sex: Male; Age: 26; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209473 D5528 Peripheral blood Sex: Male; Age: 19; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209474 D5529 Peripheral blood Sex: Female; Age: 60; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209475 D5530 Peripheral blood Sex: Female; Age: 17; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209476 D5531 Peripheral blood Sex: Female; Age: 41; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209477 D5537 Peripheral blood Sex: Female; Age: 48; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209478 D5538 Peripheral blood Sex: Female; Age: 26; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209479 D5542 Peripheral blood Sex: Male; Age: 35; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209480 D5543 Peripheral blood Sex: Female; Age: 22; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209481 D5544 Peripheral blood Sex: Female; Age: 73; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209482 D5545 Peripheral blood Sex: Male; Age: 69; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209504 E04811 Peripheral blood Sex: Male; Age: 21; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209505 E04812 Peripheral blood Sex: Male; Age: 34; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209507 D5451 Peripheral blood Sex: Female; Age: 31; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209508 D5452 Peripheral blood Sex: Female; Age: 40; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209509 D5454 Peripheral blood Sex: Female; Age: 24; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209510 D5455 Peripheral blood Sex: Male; Age: 24; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209513 D5458 Peripheral blood Sex: Female; Age: 25; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209516 D5462 Peripheral blood Sex: Male; Age: 32; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209517 D5463 Peripheral blood Sex: Female; Age: 23; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209518 D5464 Peripheral blood Sex: Male; Age: 36; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209519 D5465 Peripheral blood Sex: Male; Age: 26; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209520 D5466 Peripheral blood Sex: Female; Age: 23; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209521 D5467 Peripheral blood Sex: Male; Age: 36; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209522 D5470 Peripheral blood Sex: Female; Age: 40; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209523 D5472 Peripheral blood Sex: Female; Age: 26; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Crohn's disease Case GSM5209524 D5473 Peripheral blood Sex: Female; Age: 18; Diagnosis: Crohn's disease; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209526 D5475 Peripheral blood Sex: Female; Age: 24; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
Ulcerative colitis Case GSM5209527 D5476 Peripheral blood Sex: Male; Age: 32; Diagnosis: Ulcerative colitis; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Case marker detected.
60 additional case samples are hidden from this preview.
Control Control GSM5209429 D5594 Peripheral blood Sex: Female; Age: 20; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209431 D5597 Peripheral blood Sex: Female; Age: 56; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209434 D5600 Peripheral blood Sex: Male; Age: 32; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209435 D5601 Peripheral blood Sex: Female; Age: 32; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209437 D5603 Peripheral blood Sex: Male; Age: 30; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209438 D5604 Peripheral blood Sex: Female; Age: 18; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209439 D5605 Peripheral blood Sex: Female; Age: 60; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209440 D5606 Peripheral blood Sex: Male; Age: 33; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209442 D5608 Peripheral blood Sex: Male; Age: 30; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209443 D5609 Peripheral blood Sex: Female; Age: 34; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209445 D5611 Peripheral blood Sex: Male; Age: 27; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209447 D5614 Peripheral blood Sex: Female; Age: 30; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209450 D5498 Peripheral blood Sex: Female; Age: 72; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209452 D5500 Peripheral blood Sex: Female; Age: 24; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209461 D5511 Peripheral blood Sex: Male; Age: 31; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209462 D5513 Peripheral blood Sex: Female; Age: 34; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209464 D5518 Peripheral blood Sex: Female; Age: 49; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209467 D5522 Peripheral blood Sex: Male; Age: 37; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209468 D5523 Peripheral blood Sex: Male; Age: 30; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209469 D5524 Peripheral blood Sex: Male; Age: 64; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209470 D5525 Peripheral blood Sex: Male; Age: 23; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209471 D5526 Peripheral blood Sex: Female; Age: 24; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209483 D5654 Peripheral blood Sex: Male; Age: 57; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209484 D5655 Peripheral blood Sex: Female; Age: 50; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209485 D5656 Peripheral blood Sex: Male; Age: 27; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209486 D5657 Peripheral blood Sex: Male; Age: 69; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209487 D5658 Peripheral blood Sex: Male; Age: 28; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209488 D5659 Peripheral blood Sex: Female; Age: 51; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209489 D5660 Peripheral blood Sex: Male; Age: 64; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209490 D5661 Peripheral blood Sex: Male; Age: 52; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209491 D5662 Peripheral blood Sex: Male; Age: 55; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209492 D5663 Peripheral blood Sex: Male; Age: 47; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209493 D5664 Peripheral blood Sex: Female; Age: 61; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209494 D5665 Peripheral blood Sex: Female; Age: 29; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209495 E04802 Peripheral blood Sex: Female; Age: 36; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209496 E04803 Peripheral blood Sex: Female; Age: 24; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209497 E04804 Peripheral blood Sex: Female; Age: 24; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209498 E04805 Peripheral blood Sex: Female; Age: 21; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209499 E04806 Peripheral blood Sex: Female; Age: 54; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Healthy control Control GSM5209500 E04807 Peripheral blood Sex: Female; Age: 24; Diagnosis: Healthy control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209501 E04808 Peripheral blood Sex: Female; Age: 78; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209502 E04809 Peripheral blood Sex: Male; Age: 23; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209503 E04810 Peripheral blood Sex: Female; Age: 27; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209506 D5450 Peripheral blood Sex: Male; Age: 51; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209511 D5456 Peripheral blood Sex: Female; Age: 23; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209512 D5457 Peripheral blood Sex: Male; Age: 33; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209514 D5460 Peripheral blood Sex: Female; Age: 23; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209515 D5461 Peripheral blood Sex: Male; Age: 41; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209525 D5474 Peripheral blood Sex: Female; Age: 35; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
Control Control GSM5209528 D5477 Peripheral blood Sex: Female; Age: 61; Diagnosis: Symptomatic control; Annotation file: HumanHT-12_V4_0_R2_15002873_B.Bgx Sample-local control marker detected.
45 additional control samples are hidden from this preview.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.