Matching samples

GSE1710 · Expression profiling in inflammatory bowel disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

10 case / 11 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (31)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM29595

Uncertain

Control 01, NC01

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Control 01, NC01 sigmoid colon biopsy none
        • Control 01, NC01 sigmoid colon biopsy none
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Control 01, NC01 sigmoid colon biopsy none
          • Control 01, NC01 sigmoid colon biopsy none
        Source metadata
        Source name
        sigmoid colon biopsy
        Characteristics
        none
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM29595
sample_title: Control 01, NC01
source_name: sigmoid colon biopsy
characteristics: none

        GSM29596

        Uncertain

        Control 02, NC02

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • Control 02, NC02 sigmoid colon biopsy none
              • Control 02, NC02 sigmoid colon biopsy none
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • Control 02, NC02 sigmoid colon biopsy none
                • Control 02, NC02 sigmoid colon biopsy none
              Source metadata
              Source name
              sigmoid colon biopsy
              Characteristics
              none
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM29596
sample_title: Control 02, NC02
source_name: sigmoid colon biopsy
characteristics: none

              GSM29597

              Uncertain

              Control 03, NC03

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • Control 03, NC03 sigmoid colon biopsy none
                    • Control 03, NC03 sigmoid colon biopsy none
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • Control 03, NC03 sigmoid colon biopsy none
                      • Control 03, NC03 sigmoid colon biopsy none
                    Source metadata
                    Source name
                    sigmoid colon biopsy
                    Characteristics
                    none
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM29597
sample_title: Control 03, NC03
source_name: sigmoid colon biopsy
characteristics: none

                    GSM29598

                    Uncertain

                    Control 04, NC04

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • Control 04, NC04 sigmoid colon biopsy none
                          • Control 04, NC04 sigmoid colon biopsy none
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • Control 04, NC04 sigmoid colon biopsy none
                            • Control 04, NC04 sigmoid colon biopsy none
                          Source metadata
                          Source name
                          sigmoid colon biopsy
                          Characteristics
                          none
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM29598
sample_title: Control 04, NC04
source_name: sigmoid colon biopsy
characteristics: none

                          GSM29599

                          Uncertain

                          Control 05, NC05

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • Control 05, NC05 sigmoid colon biopsy none
                                • Control 05, NC05 sigmoid colon biopsy none
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • Control 05, NC05 sigmoid colon biopsy none
                                  • Control 05, NC05 sigmoid colon biopsy none
                                Source metadata
                                Source name
                                sigmoid colon biopsy
                                Characteristics
                                none
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM29599
sample_title: Control 05, NC05
source_name: sigmoid colon biopsy
characteristics: none

                                GSM29600

                                Uncertain

                                Control 06, NC06

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • Control 06, NC06 sigmoid colon biopsy none
                                      • Control 06, NC06 sigmoid colon biopsy none
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • Control 06, NC06 sigmoid colon biopsy none
                                        • Control 06, NC06 sigmoid colon biopsy none
                                      Source metadata
                                      Source name
                                      sigmoid colon biopsy
                                      Characteristics
                                      none
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM29600
sample_title: Control 06, NC06
source_name: sigmoid colon biopsy
characteristics: none

                                      GSM29601

                                      Uncertain

                                      Control 07, NC07

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • Control 07, NC07 sigmoid colon biopsy none
                                            • Control 07, NC07 sigmoid colon biopsy none
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • Control 07, NC07 sigmoid colon biopsy none
                                              • Control 07, NC07 sigmoid colon biopsy none
                                            Source metadata
                                            Source name
                                            sigmoid colon biopsy
                                            Characteristics
                                            none
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM29601
sample_title: Control 07, NC07
source_name: sigmoid colon biopsy
characteristics: none

                                            GSM29602

                                            Uncertain

                                            Control 08, NC08

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • Control 08, NC08 sigmoid colon biopsy none
                                                  • Control 08, NC08 sigmoid colon biopsy none
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • Control 08, NC08 sigmoid colon biopsy none
                                                    • Control 08, NC08 sigmoid colon biopsy none
                                                  Source metadata
                                                  Source name
                                                  sigmoid colon biopsy
                                                  Characteristics
                                                  none
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM29602
sample_title: Control 08, NC08
source_name: sigmoid colon biopsy
characteristics: none

                                                  GSM29603

                                                  Uncertain

                                                  Control 09, NC09

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • Control 09, NC09 sigmoid colon biopsy none
                                                        • Control 09, NC09 sigmoid colon biopsy none
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • Control 09, NC09 sigmoid colon biopsy none
                                                          • Control 09, NC09 sigmoid colon biopsy none
                                                        Source metadata
                                                        Source name
                                                        sigmoid colon biopsy
                                                        Characteristics
                                                        none
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM29603
sample_title: Control 09, NC09
source_name: sigmoid colon biopsy
characteristics: none

                                                        GSM29604

                                                        Uncertain

                                                        Control 10, NC10

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • Control 10, NC10 sigmoid colon biopsy none
                                                              • Control 10, NC10 sigmoid colon biopsy none
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • Control 10, NC10 sigmoid colon biopsy none
                                                                • Control 10, NC10 sigmoid colon biopsy none
                                                              Source metadata
                                                              Source name
                                                              sigmoid colon biopsy
                                                              Characteristics
                                                              none
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM29604
sample_title: Control 10, NC10
source_name: sigmoid colon biopsy
characteristics: none

                                                              GSM29605

                                                              Uncertain

                                                              Control 11, NC11

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • Control 11, NC11 sigmoid colon biopsy none
                                                                    • Control 11, NC11 sigmoid colon biopsy none
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • Control 11, NC11 sigmoid colon biopsy none
                                                                      • Control 11, NC11 sigmoid colon biopsy none
                                                                    Source metadata
                                                                    Source name
                                                                    sigmoid colon biopsy
                                                                    Characteristics
                                                                    none
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM29605
sample_title: Control 11, NC11
source_name: sigmoid colon biopsy
characteristics: none

                                                                    GSM29606

                                                                    Uncertain

                                                                    Crohn 01, CD01

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • Crohn 01, CD01 sigmoid colon biopsy none
                                                                          • Crohn 01, CD01 sigmoid colon biopsy none
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • Crohn 01, CD01 sigmoid colon biopsy none
                                                                            • Crohn 01, CD01 sigmoid colon biopsy none
                                                                          Source metadata
                                                                          Source name
                                                                          sigmoid colon biopsy
                                                                          Characteristics
                                                                          none
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM29606
sample_title: Crohn 01, CD01
source_name: sigmoid colon biopsy
characteristics: none

                                                                          GSM29607

                                                                          Uncertain

                                                                          Crohn 02, CD02

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • Crohn 02, CD02 sigmoid colon biopsy none
                                                                                • Crohn 02, CD02 sigmoid colon biopsy none
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • Crohn 02, CD02 sigmoid colon biopsy none
                                                                                  • Crohn 02, CD02 sigmoid colon biopsy none
                                                                                Source metadata
                                                                                Source name
                                                                                sigmoid colon biopsy
                                                                                Characteristics
                                                                                none
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM29607
sample_title: Crohn 02, CD02
source_name: sigmoid colon biopsy
characteristics: none

                                                                                GSM29608

                                                                                Uncertain

                                                                                Crohn 03, CD03

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • Crohn 03, CD03 sigmoid colon biopsy none
                                                                                      • Crohn 03, CD03 sigmoid colon biopsy none
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • Crohn 03, CD03 sigmoid colon biopsy none
                                                                                        • Crohn 03, CD03 sigmoid colon biopsy none
                                                                                      Source metadata
                                                                                      Source name
                                                                                      sigmoid colon biopsy
                                                                                      Characteristics
                                                                                      none
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM29608
sample_title: Crohn 03, CD03
source_name: sigmoid colon biopsy
characteristics: none

                                                                                      GSM29609

                                                                                      Uncertain

                                                                                      Crohn 04, CD04

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • Crohn 04, CD04 sigmoid colon biopsy none
                                                                                            • Crohn 04, CD04 sigmoid colon biopsy none
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • Crohn 04, CD04 sigmoid colon biopsy none
                                                                                              • Crohn 04, CD04 sigmoid colon biopsy none
                                                                                            Source metadata
                                                                                            Source name
                                                                                            sigmoid colon biopsy
                                                                                            Characteristics
                                                                                            none
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM29609
sample_title: Crohn 04, CD04
source_name: sigmoid colon biopsy
characteristics: none

                                                                                            GSM29610

                                                                                            Uncertain

                                                                                            Crohn 05, CD05

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • Crohn 05, CD05 sigmoid colon biopsy none
                                                                                                  • Crohn 05, CD05 sigmoid colon biopsy none
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • Crohn 05, CD05 sigmoid colon biopsy none
                                                                                                    • Crohn 05, CD05 sigmoid colon biopsy none
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  sigmoid colon biopsy
                                                                                                  Characteristics
                                                                                                  none
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM29610
sample_title: Crohn 05, CD05
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                  GSM29611

                                                                                                  Uncertain

                                                                                                  Crohn 06, CD06

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • Crohn 06, CD06 sigmoid colon biopsy none
                                                                                                        • Crohn 06, CD06 sigmoid colon biopsy none
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • Crohn 06, CD06 sigmoid colon biopsy none
                                                                                                          • Crohn 06, CD06 sigmoid colon biopsy none
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        sigmoid colon biopsy
                                                                                                        Characteristics
                                                                                                        none
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM29611
sample_title: Crohn 06, CD06
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                        GSM29612

                                                                                                        Uncertain

                                                                                                        Crohn 07, CD07

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • Crohn 07, CD07 sigmoid colon biopsy none
                                                                                                              • Crohn 07, CD07 sigmoid colon biopsy none
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • Crohn 07, CD07 sigmoid colon biopsy none
                                                                                                                • Crohn 07, CD07 sigmoid colon biopsy none
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              sigmoid colon biopsy
                                                                                                              Characteristics
                                                                                                              none
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM29612
sample_title: Crohn 07, CD07
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                              GSM29613

                                                                                                              Uncertain

                                                                                                              Crohn 08, CD08

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • Crohn 08, CD08 sigmoid colon biopsy none
                                                                                                                    • Crohn 08, CD08 sigmoid colon biopsy none
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • Crohn 08, CD08 sigmoid colon biopsy none
                                                                                                                      • Crohn 08, CD08 sigmoid colon biopsy none
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    sigmoid colon biopsy
                                                                                                                    Characteristics
                                                                                                                    none
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM29613
sample_title: Crohn 08, CD08
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                    GSM29614

                                                                                                                    Uncertain

                                                                                                                    Crohn 09, CD09

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • Crohn 09, CD09 sigmoid colon biopsy none
                                                                                                                          • Crohn 09, CD09 sigmoid colon biopsy none
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • Crohn 09, CD09 sigmoid colon biopsy none
                                                                                                                            • Crohn 09, CD09 sigmoid colon biopsy none
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          sigmoid colon biopsy
                                                                                                                          Characteristics
                                                                                                                          none
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM29614
sample_title: Crohn 09, CD09
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                          GSM29615

                                                                                                                          Uncertain

                                                                                                                          Crohn 10, CD10

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • Crohn 10, CD10 sigmoid colon biopsy none
                                                                                                                                • Crohn 10, CD10 sigmoid colon biopsy none
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • Crohn 10, CD10 sigmoid colon biopsy none
                                                                                                                                  • Crohn 10, CD10 sigmoid colon biopsy none
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                sigmoid colon biopsy
                                                                                                                                Characteristics
                                                                                                                                none
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM29615
sample_title: Crohn 10, CD10
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                GSM29616

                                                                                                                                Uncertain

                                                                                                                                Colitis 01, UC01

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                      • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                    • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                        • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                      • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                            • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                          • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                              • Colitis 01, UC01 sigmoid colon biopsy none
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            sigmoid colon biopsy
                                                                                                                                            Characteristics
                                                                                                                                            none
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM29616
sample_title: Colitis 01, UC01
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                            GSM29617

                                                                                                                                            Uncertain

                                                                                                                                            Colitis 02, UC02

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                  • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                    • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                  • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                        • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                      • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                          • Colitis 02, UC02 sigmoid colon biopsy none
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        sigmoid colon biopsy
                                                                                                                                                        Characteristics
                                                                                                                                                        none
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM29617
sample_title: Colitis 02, UC02
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                        GSM29618

                                                                                                                                                        Uncertain

                                                                                                                                                        Colitis 03, UC03

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                              • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                            • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                                • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                              • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                                    • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                                  • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                    • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                                      • Colitis 03, UC03 sigmoid colon biopsy none
                                                                                                                                                                    Source metadata
                                                                                                                                                                    Source name
                                                                                                                                                                    sigmoid colon biopsy
                                                                                                                                                                    Characteristics
                                                                                                                                                                    none
                                                                                                                                                                    Description
                                                                                                                                                                    Not reported
                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                    Source
                                                                                                                                                                    GEO
                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                    sample_accession: GSM29618
sample_title: Colitis 03, UC03
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                    GSM29619

                                                                                                                                                                    Uncertain

                                                                                                                                                                    Colitis 04, UC04

                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                    • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                          • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                        • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                            • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                          • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                                • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                              • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                                  • Colitis 04, UC04 sigmoid colon biopsy none
                                                                                                                                                                                Source metadata
                                                                                                                                                                                Source name
                                                                                                                                                                                sigmoid colon biopsy
                                                                                                                                                                                Characteristics
                                                                                                                                                                                none
                                                                                                                                                                                Description
                                                                                                                                                                                Not reported
                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                Source
                                                                                                                                                                                GEO
                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                sample_accession: GSM29619
sample_title: Colitis 04, UC04
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                GSM29620

                                                                                                                                                                                Uncertain

                                                                                                                                                                                Colitis 05, UC05

                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                  • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                    • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                      • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                      • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                    • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                      • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                        • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                      • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                        • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                          • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                            • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                            • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                          • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                            • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                              • Colitis 05, UC05 sigmoid colon biopsy none
                                                                                                                                                                                            Source metadata
                                                                                                                                                                                            Source name
                                                                                                                                                                                            sigmoid colon biopsy
                                                                                                                                                                                            Characteristics
                                                                                                                                                                                            none
                                                                                                                                                                                            Description
                                                                                                                                                                                            Not reported
                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                            Source
                                                                                                                                                                                            GEO
                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                            sample_accession: GSM29620
sample_title: Colitis 05, UC05
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                            GSM29621

                                                                                                                                                                                            Uncertain

                                                                                                                                                                                            Colitis 06, UC06

                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                            • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                              • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                  • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                  • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                  • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                    • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                  • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                    • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                      • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                        • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                        • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                      • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                        • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                          • Colitis 06, UC06 sigmoid colon biopsy none
                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                        Source name
                                                                                                                                                                                                        sigmoid colon biopsy
                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                        none
                                                                                                                                                                                                        Description
                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                        Source
                                                                                                                                                                                                        GEO
                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                        sample_accession: GSM29621
sample_title: Colitis 06, UC06
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                                        GSM29622

                                                                                                                                                                                                        Uncertain

                                                                                                                                                                                                        Colitis 07, UC07

                                                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                                                        • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                          • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                            • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                              • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                              • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                            • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                                                                              • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                                • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                              • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                  • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                    • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                                    • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                                  • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                                                                                    • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                                      • Colitis 07, UC07 sigmoid colon biopsy none
                                                                                                                                                                                                                    Source metadata
                                                                                                                                                                                                                    Source name
                                                                                                                                                                                                                    sigmoid colon biopsy
                                                                                                                                                                                                                    Characteristics
                                                                                                                                                                                                                    none
                                                                                                                                                                                                                    Description
                                                                                                                                                                                                                    Not reported
                                                                                                                                                                                                                    Indexed organism evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Indexed assay evidence
                                                                                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                    Source
                                                                                                                                                                                                                    GEO
                                                                                                                                                                                                                    Original indexed metadata
                                                                                                                                                                                                                    sample_accession: GSM29622
sample_title: Colitis 07, UC07
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                                                    GSM29623

                                                                                                                                                                                                                    Uncertain

                                                                                                                                                                                                                    Colitis 08, UC08

                                                                                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                                                                                    • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                      • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                        • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                          • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                          • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                        • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                                                                          • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                            • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                          • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                            • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                              • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                                • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                              • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                                                                • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                                  • Colitis 08, UC08 sigmoid colon biopsy none
                                                                                                                                                                                                                                Source metadata
                                                                                                                                                                                                                                Source name
                                                                                                                                                                                                                                sigmoid colon biopsy
                                                                                                                                                                                                                                Characteristics
                                                                                                                                                                                                                                none
                                                                                                                                                                                                                                Description
                                                                                                                                                                                                                                Not reported
                                                                                                                                                                                                                                Indexed organism evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Indexed assay evidence
                                                                                                                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                Source
                                                                                                                                                                                                                                GEO
                                                                                                                                                                                                                                Original indexed metadata
                                                                                                                                                                                                                                sample_accession: GSM29623
sample_title: Colitis 08, UC08
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                                                                GSM29624

                                                                                                                                                                                                                                Uncertain

                                                                                                                                                                                                                                Colitis 09, UC09

                                                                                                                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                Requirements and decision evidence
                                                                                                                                                                                                                                • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                  • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                    • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                      • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                      • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                    • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                                                                                      • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                        • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                      • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                        • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                          • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                                                                                            • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                            • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                          • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                                                                                            • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                              • Colitis 09, UC09 sigmoid colon biopsy none
                                                                                                                                                                                                                                            Source metadata
                                                                                                                                                                                                                                            Source name
                                                                                                                                                                                                                                            sigmoid colon biopsy
                                                                                                                                                                                                                                            Characteristics
                                                                                                                                                                                                                                            none
                                                                                                                                                                                                                                            Description
                                                                                                                                                                                                                                            Not reported
                                                                                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                            Source
                                                                                                                                                                                                                                            GEO
                                                                                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                                                                                            sample_accession: GSM29624
sample_title: Colitis 09, UC09
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                                                                            GSM29625

                                                                                                                                                                                                                                            Uncertain

                                                                                                                                                                                                                                            Colitis 10, UC10

                                                                                                                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Case: specimen category excludes: Biofluid — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Control: specimen category excludes: Biofluid — Insufficient evidence. Study role: No explicit case or control marker detected.

                                                                                                                                                                                                                                            Requirements and decision evidence
                                                                                                                                                                                                                                            • Case: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                                                                                              • Case: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                                                                                                • Case: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                                                                                                  • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                  • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                • Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                                                                                  • Case: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                    • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                  • Control: organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                                                                                                    • Control: assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                                                                                                      • Control: specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                                                                                                        • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                        • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                      • Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                                                                                                        • Control: specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                                                                                                          • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                          • Colitis 10, UC10 sigmoid colon biopsy none
                                                                                                                                                                                                                                                        Source metadata
                                                                                                                                                                                                                                                        Source name
                                                                                                                                                                                                                                                        sigmoid colon biopsy
                                                                                                                                                                                                                                                        Characteristics
                                                                                                                                                                                                                                                        none
                                                                                                                                                                                                                                                        Description
                                                                                                                                                                                                                                                        Not reported
                                                                                                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                                                                                        Source
                                                                                                                                                                                                                                                        GEO
                                                                                                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                                                                                                        sample_accession: GSM29625
sample_title: Colitis 10, UC10
source_name: sigmoid colon biopsy
characteristics: none

                                                                                                                                                                                                                                                        Excluded samples (0)

                                                                                                                                                                                                                                                        No excluded samples.