Matching samples

GSE172372 · Cyclin-dependent kinase 9 is a therapeutic target for anti-TNF resistant inflammatory bowel disease

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

5 case / 12 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (17)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM5253626

Uncertain

DMSO US1 UC1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
          • Supported by the indexed evidence.
          • specimen category excludes: Biofluid — Meets requirement
            • Supported by the indexed evidence.
            Source metadata
            Source name
            Colonic CD4+ T cells
            Characteristics
            disease: Ulcerative colitis; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0
            Description
            Not reported
            Indexed organism evidence
            INFERRED · PARENT_INHERITED: Not reported
            Indexed assay evidence
            INFERRED · PARENT_INHERITED: Not reported
            Source
            GEO
            Original indexed metadata
            sample_accession: GSM5253626
sample_title: DMSO US1 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0

            GSM5253627

            Uncertain

            DMSO RS1 UC1

            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

            Requirements and decision evidence
            • organism: Homo sapiens — Insufficient evidence
              • The required value is not reported.
              • assay type: bulk RNA-seq — Insufficient evidence
                • The required value is not reported.
                • specimen category: Tissue or biopsy — Insufficient evidence
                  • The required value is not reported.
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Meets requirement
                      • Supported by the indexed evidence.
                      Source metadata
                      Source name
                      Colonic CD4+ T cells
                      Characteristics
                      disease: Ulcerative colitis; treatment: DMSO; stimulation: 3h PMA + ionomomycin; stimulation time point: day 0
                      Description
                      Not reported
                      Indexed organism evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Indexed assay evidence
                      INFERRED · PARENT_INHERITED: Not reported
                      Source
                      GEO
                      Original indexed metadata
                      sample_accession: GSM5253627
sample_title: DMSO RS1 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: DMSO; stimulation: 3h PMA  + ionomomycin; stimulation time point: day 0

                      GSM5253628

                      Uncertain

                      NVP2 RS1 UC1

                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                      Requirements and decision evidence
                      • organism: Homo sapiens — Insufficient evidence
                        • The required value is not reported.
                        • assay type: bulk RNA-seq — Insufficient evidence
                          • The required value is not reported.
                          • specimen category: Tissue or biopsy — Insufficient evidence
                            • The required value is not reported.
                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                              • Supported by the indexed evidence.
                              • specimen category excludes: Biofluid — Meets requirement
                                • Supported by the indexed evidence.
                                Source metadata
                                Source name
                                Colonic CD4+ T cells
                                Characteristics
                                disease: Ulcerative colitis; treatment: NVP-2; stimulation: 3h PMA + ionomomycin (+NVP-2); stimulation time point: day 0
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM5253628
sample_title: NVP2 RS1 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: NVP-2; stimulation: 3h PMA  + ionomomycin (+NVP-2); stimulation time point: day 0

                                GSM5253629

                                Uncertain

                                DMSO US2 UC1

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                        • Supported by the indexed evidence.
                                        • specimen category excludes: Biofluid — Meets requirement
                                          • Supported by the indexed evidence.
                                          Source metadata
                                          Source name
                                          Colonic CD4+ T cells
                                          Characteristics
                                          disease: Ulcerative colitis; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5
                                          Description
                                          Not reported
                                          Indexed organism evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Indexed assay evidence
                                          INFERRED · PARENT_INHERITED: Not reported
                                          Source
                                          GEO
                                          Original indexed metadata
                                          sample_accession: GSM5253629
sample_title: DMSO US2 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5

                                          GSM5253630

                                          Uncertain

                                          DMSO RS2 UC1

                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                          Requirements and decision evidence
                                          • organism: Homo sapiens — Insufficient evidence
                                            • The required value is not reported.
                                            • assay type: bulk RNA-seq — Insufficient evidence
                                              • The required value is not reported.
                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                • The required value is not reported.
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Meets requirement
                                                    • Supported by the indexed evidence.
                                                    Source metadata
                                                    Source name
                                                    Colonic CD4+ T cells
                                                    Characteristics
                                                    disease: Ulcerative colitis; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5
                                                    Description
                                                    Not reported
                                                    Indexed organism evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Indexed assay evidence
                                                    INFERRED · PARENT_INHERITED: Not reported
                                                    Source
                                                    GEO
                                                    Original indexed metadata
                                                    sample_accession: GSM5253630
sample_title: DMSO RS2 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5

                                                    GSM5253631

                                                    Uncertain

                                                    NVP2 RS2 UC1

                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                    Requirements and decision evidence
                                                    • organism: Homo sapiens — Insufficient evidence
                                                      • The required value is not reported.
                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                        • The required value is not reported.
                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                          • The required value is not reported.
                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                            • Supported by the indexed evidence.
                                                            • specimen category excludes: Biofluid — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              Source metadata
                                                              Source name
                                                              Colonic CD4+ T cells
                                                              Characteristics
                                                              disease: Ulcerative colitis; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM5253631
sample_title: NVP2 RS2 UC1
source_name: Colonic CD4+ T cells
characteristics: disease: Ulcerative colitis; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5

                                                              GSM5253632

                                                              Uncertain

                                                              DMSO US1 CD1

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                      • Supported by the indexed evidence.
                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                        • Supported by the indexed evidence.
                                                                        Source metadata
                                                                        Source name
                                                                        Colonic CD4+ T cells
                                                                        Characteristics
                                                                        disease: Crohn's disease; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0
                                                                        Description
                                                                        Not reported
                                                                        Indexed organism evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Indexed assay evidence
                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                        Source
                                                                        GEO
                                                                        Original indexed metadata
                                                                        sample_accession: GSM5253632
sample_title: DMSO US1 CD1
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0

                                                                        GSM5253633

                                                                        Uncertain

                                                                        DMSO RS1 CD1

                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                        Requirements and decision evidence
                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                  • Supported by the indexed evidence.
                                                                                  Source metadata
                                                                                  Source name
                                                                                  Colonic CD4+ T cells
                                                                                  Characteristics
                                                                                  disease: Crohn's disease; treatment: DMSO; stimulation: 3h PMA + ionomomycin; stimulation time point: day 0
                                                                                  Description
                                                                                  Not reported
                                                                                  Indexed organism evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Indexed assay evidence
                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                  Source
                                                                                  GEO
                                                                                  Original indexed metadata
                                                                                  sample_accession: GSM5253633
sample_title: DMSO RS1 CD1
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 3h PMA  + ionomomycin; stimulation time point: day 0

                                                                                  GSM5253634

                                                                                  Uncertain

                                                                                  DMSO US2 CD1

                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                  Requirements and decision evidence
                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                          • Supported by the indexed evidence.
                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Colonic CD4+ T cells
                                                                                            Characteristics
                                                                                            disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM5253634
sample_title: DMSO US2 CD1
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5

                                                                                            GSM5253635

                                                                                            Uncertain

                                                                                            DMSO RS2 CD1

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                    • Supported by the indexed evidence.
                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                      • Supported by the indexed evidence.
                                                                                                      Source metadata
                                                                                                      Source name
                                                                                                      Colonic CD4+ T cells
                                                                                                      Characteristics
                                                                                                      disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5
                                                                                                      Description
                                                                                                      Not reported
                                                                                                      Indexed organism evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Indexed assay evidence
                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                      Source
                                                                                                      GEO
                                                                                                      Original indexed metadata
                                                                                                      sample_accession: GSM5253635
sample_title: DMSO RS2 CD1
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5

                                                                                                      GSM5253636

                                                                                                      Uncertain

                                                                                                      NVP2 RS2 CD1

                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                      Requirements and decision evidence
                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                • Supported by the indexed evidence.
                                                                                                                Source metadata
                                                                                                                Source name
                                                                                                                Colonic CD4+ T cells
                                                                                                                Characteristics
                                                                                                                disease: Crohn's disease; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5
                                                                                                                Description
                                                                                                                Not reported
                                                                                                                Indexed organism evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Indexed assay evidence
                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                Source
                                                                                                                GEO
                                                                                                                Original indexed metadata
                                                                                                                sample_accession: GSM5253636
sample_title: NVP2 RS2 CD1
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5

                                                                                                                GSM5253637

                                                                                                                Uncertain

                                                                                                                DMSO US1 CD2

                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                                                Requirements and decision evidence
                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                        • Supported by the indexed evidence.
                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Colonic CD4+ T cells
                                                                                                                          Characteristics
                                                                                                                          disease: Crohn's disease; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM5253637
sample_title: DMSO US1 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: Unstimulated; stimulation time point: day 0

                                                                                                                          GSM5253638

                                                                                                                          Uncertain

                                                                                                                          DMSO RS1 CD2

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                    Source metadata
                                                                                                                                    Source name
                                                                                                                                    Colonic CD4+ T cells
                                                                                                                                    Characteristics
                                                                                                                                    disease: Crohn's disease; treatment: DMSO; stimulation: 3h PMA + ionomomycin; stimulation time point: day 0
                                                                                                                                    Description
                                                                                                                                    Not reported
                                                                                                                                    Indexed organism evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Indexed assay evidence
                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                    Source
                                                                                                                                    GEO
                                                                                                                                    Original indexed metadata
                                                                                                                                    sample_accession: GSM5253638
sample_title: DMSO RS1 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 3h PMA  + ionomomycin; stimulation time point: day 0

                                                                                                                                    GSM5253639

                                                                                                                                    Uncertain

                                                                                                                                    NVP2 RS1 CD2

                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                    Requirements and decision evidence
                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                              Source metadata
                                                                                                                                              Source name
                                                                                                                                              Colonic CD4+ T cells
                                                                                                                                              Characteristics
                                                                                                                                              disease: Crohn's disease; treatment: NVP-2; stimulation: 3h PMA + ionomomycin (+ NVP-2); stimulation time point: day 0
                                                                                                                                              Description
                                                                                                                                              Not reported
                                                                                                                                              Indexed organism evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Indexed assay evidence
                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                              Source
                                                                                                                                              GEO
                                                                                                                                              Original indexed metadata
                                                                                                                                              sample_accession: GSM5253639
sample_title: NVP2 RS1 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: NVP-2; stimulation: 3h PMA  + ionomomycin (+ NVP-2); stimulation time point: day 0

                                                                                                                                              GSM5253640

                                                                                                                                              Uncertain

                                                                                                                                              DMSO US2 CD2

                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                                                                              Requirements and decision evidence
                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Colonic CD4+ T cells
                                                                                                                                                        Characteristics
                                                                                                                                                        disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM5253640
sample_title: DMSO US2 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> Unstimulated; stimulation time point: day 5

                                                                                                                                                        GSM5253641

                                                                                                                                                        Uncertain

                                                                                                                                                        DMSO RS2 CD2

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                  Source metadata
                                                                                                                                                                  Source name
                                                                                                                                                                  Colonic CD4+ T cells
                                                                                                                                                                  Characteristics
                                                                                                                                                                  disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5
                                                                                                                                                                  Description
                                                                                                                                                                  Not reported
                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                  Source
                                                                                                                                                                  GEO
                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                  sample_accession: GSM5253641
sample_title: DMSO RS2 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: DMSO; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin; stimulation time point: day 5

                                                                                                                                                                  GSM5253642

                                                                                                                                                                  Uncertain

                                                                                                                                                                  NVP2 RS2 CD2

                                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Explicit characteristic comparison arm detected.

                                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                      • The required value is not reported.
                                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                        • The required value is not reported.
                                                                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                                            Source metadata
                                                                                                                                                                            Source name
                                                                                                                                                                            Colonic CD4+ T cells
                                                                                                                                                                            Characteristics
                                                                                                                                                                            disease: Crohn's disease; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5
                                                                                                                                                                            Description
                                                                                                                                                                            Not reported
                                                                                                                                                                            Indexed organism evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Indexed assay evidence
                                                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                            Source
                                                                                                                                                                            GEO
                                                                                                                                                                            Original indexed metadata
                                                                                                                                                                            sample_accession: GSM5253642
sample_title: NVP2 RS2 CD2
source_name: Colonic CD4+ T cells
characteristics: disease: Crohn's disease; treatment: NVP-2; stimulation: 72h plate-bound anti-CD3 and anti-CD28 (2 mg/ml) -> 48h rest -> 3h PMA + ionomycin (+ NVP-2); stimulation time point: day 5

                                                                                                                                                                            Excluded samples (0)

                                                                                                                                                                            No excluded samples.