GSE174159

Identifying new pronostic markers of IBD

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

34 case / 5 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: bulk RNA-seq
Organism: Homo sapiens
Whole-study samples: 39 samples
Specimen: Biopsy
Reported/interpreted study design: Treatment vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Galland F, Naquet P
Contact name: Franck Galland
Submission date: 2021-05-10
Last update: 2022-11-24
Organization: centre d'immunologie de Marseille Luminy
Department: Not available
Public date: 2022-11-24
Experiment types: Expression profiling by high throughput sequencing
Platforms: GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Series type: Series
SubSeries: Not available
BioProject: PRJNA728646

Summary

Studying the variations in VNN1 expression at different stages of the disease and under therapy,

Overall design

A IBD biobank was generated starting with biopsy samples collected from patients suffering from CD or UC and diagnosed as clinically quiescent (Q) or in active phase of the disease (A). Patients were even not-treated at the period of diagnosis (NT) or responders or not to various therapies such as 5-ASA, anti-TNFalpha biologics (aTNF), corticoids (Cort) or immunosuppressors (IS). Controls were taken from non-inflammatory healthy portions of colon (CTRL). Transcriptome profiling was performed with RNA-Seq.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 39 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 2 linked publications 2 DOIs Primary publication Harnessing the Vnn1 pantetheinase pathway boosts short chain fatty acids production and mucosal protection in colitis. Gut, 2023 PubMed DOI Related publications Shared Immune Associations Between COVID-19 and Inflammatory Bowel Disease: A Cross-Sectional Observational Study in Shanghai, China. Journal of inflammation research, 2024 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: Treatment status metadata normalized where treatment is part of the comparison. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Review before analysis

85% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

3/15 pts

Unassigned or review-needed samples remain before analysis.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

6 samples need manual grouping review.

Next Steps

Resolve unassigned or review-needed samples in the grouping table.

Analysis Preparation Checklist

4/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Needs review

6 review-needed samples and 0 unassigned samples remain.

Resolve ambiguous and unassigned samples before finalizing the contrast.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Analysis readiness has blockers that must be resolved before DE.

One or more samples were flagged for manual review.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Disease context Crohn's disease, inflammatory bowel disease, ulcerative colitis Disease context came from Normalization rules.
Likely case group Treated 34 samples
Likely control group Mixed controls 5 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded for tissue search because it is a treatment/control experiment. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Treatment vs control. Specimen: Biopsy. Comparison suitability: 0%.
Prioritized assay: bulk RNA-seq is the active assay expectation.
Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease, Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 2 publications; 2 DOIs available: PMID 36175116, PMID 38558943.
Publication context: Harnessing the Vnn1 pantetheinase pathway boosts short chain fatty acids production and mucosal protection in colitis.. Gut, 2023. PMID 36175116. DOI 10.1136/gutjnl-2021-325792.
Publication context: Shared Immune Associations Between COVID-19 and Inflammatory Bowel Disease: A Cross-Sectional Observational Study in Shanghai, China.. Journal of inflammation research, 2024. PMID 38558943. DOI 10.2147/JIR.S449746.

Cautions

Downgraded for tissue search because it is a treatment/control experiment.
Treatment/control experiment downgraded because this ranking targets tumor-vs-normal tissue comparisons.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Treated samples may need review depending on the comparison.
Multiple disease or phenotype arms were detected. The displayed grouping summarizes the full dataset; select the requested disease-specific contrast before analysis.

Normalized Fields

173 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type bulk RNA-seq GSE174159 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence bulk rna-seq dataset_accession: GSE174159 dataset_title: Identifying new pronostic markers of IBD organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_avai... keyword match keyword match: bulk rna-seq

collection_method biopsy GSM5288086 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288087 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288088 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288089 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288090 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288091 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288092 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288093 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288094 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288095 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288096 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288097 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288098 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288099 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288100 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288101 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288102 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288103 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288104 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288105 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288106 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288107 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288108 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288109 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288110 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288111 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288112 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288113 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288114 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288115 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288116 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288117 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288118 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288119 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288120 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary collection method match: biopsy

control_type healthy control GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary control type match: healthy control

control_type healthy control GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary control type match: healthy control

disease inflammatory bowel disease GSE174159 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence ibd dataset_accession: GSE174159 dataset_title: Identifying new pronostic markers of IBD organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_avai... controlled vocabulary controlled vocabulary disease match: ibd

disease Crohn's disease GSM5288086 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288087 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288088 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288089 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288090 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288091 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288092 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288093 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288094 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288096 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288097 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288098 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288099 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288100 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM5288101 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288102 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288103 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288104 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288105 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288106 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288107 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288108 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease Crohn's disease GSM5288110 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM5288111 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease ulcerative colitis GSM5288112 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288113 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288114 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288115 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288116 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288117 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288118 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288119 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM5288120 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary disease match: ulcerative colitis

normal_tissue_type healthy donor tissue GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary normal tissue type match: healthy control

normal_tissue_type healthy donor tissue GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary normal tissue type match: healthy control

organism Homo sapiens GSE174159 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE174159 dataset_title: Identifying new pronostic markers of IBD organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_avai... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM5288086 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288087 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288088 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288089 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288090 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288091 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288092 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288093 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288094 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288095 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288096 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288097 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288098 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288099 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288100 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288101 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288102 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288103 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288104 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288105 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288106 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288107 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288108 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288109 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288110 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288111 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288112 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288113 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288114 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288115 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288116 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288117 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288118 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288119 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288120 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type normal tissue GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary sample type match: healthy control

sample_type normal tissue GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence healthy control 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary sample type match: healthy control

tissue colon GSE174159 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon dataset_accession: GSE174159 dataset_title: Identifying new pronostic markers of IBD organism: Homo sapiens assay_type: bulk RNA-seq processed_data_available: true raw_data_avai... controlled vocabulary controlled vocabulary tissue match: colon

tissue intestine GSM5288086 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288087 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288088 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288089 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288090 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288091 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288092 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288093 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288094 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288095 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288096 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288097 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288098 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288099 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288100 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288101 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288102 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288103 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288104 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288105 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288106 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288107 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288108 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288109 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288110 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288111 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288112 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288113 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288114 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288115 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288116 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288117 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288118 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288119 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288120 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort) controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288121 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288122 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288123 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM5288124 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA controlled vocabulary controlled vocabulary tissue match: intestinal

treatment_status treated GSM5288086 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

treatment_status treated GSM5288090 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

treatment_status treated GSM5288094 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

treatment_status treated GSM5288097 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

treatment_status treated GSM5288098 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

treatment_status treated GSM5288099 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence treated 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT) controlled vocabulary controlled vocabulary treatment status match: treated

Sample Group Preview

39 rows shown Show Hide

Study totals: Case 34 | Control 5 | Unassigned 0 | Excluded 0 | Ambiguous 0 39 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Treated	Case	GSM5288086	6_24_AM_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Crohn's disease	Case	GSM5288087	9_23_Q_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288088	12_54_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288089	20_84_Q_IS	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Immunosuppressors (IS)	Case marker detected.
Treated	Case	GSM5288090	7_91_AM_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Crohn's disease	Case	GSM5288091	10_99_Q_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288092	13_54_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288093	17_3_Q_IS	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Immunosuppressors (IS)	Case marker detected.
Treated	Case	GSM5288094	2_57_Q_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Crohn's disease	Case	GSM5288095	11_100_Q_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288096	18_7_Q_IS	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Immunosuppressors (IS)	Case marker detected.
Treated	Case	GSM5288097	1_28_Q_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Treated	Case	GSM5288098	4_80_Q_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Treated	Case	GSM5288099	5_82_AM_NT	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Non treated (NT)	treated sample: Treated sample may need exclusion outside treatment comparisons.
Crohn's disease	Case	GSM5288100	15_94_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Ulcerative colitis	Case	GSM5288101	21_1_Q_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Quiescent (Q); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288102	26_49_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288103	27_49_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288104	35_68_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Ulcerative colitis	Case	GSM5288105	37_55_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Ulcerative colitis	Case	GSM5288106	39_93_AS_Cort	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Severe activity (AS); Treatment: Corticoids (Cort)	Case marker detected.
Ulcerative colitis	Case	GSM5288107	40_44_AS_Cort	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Severe activity (AS); Treatment: Corticoids (Cort)	Case marker detected.
Ulcerative colitis	Case	GSM5288108	41_96_AS_Cort	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Severe activity (AS); Treatment: Corticoids (Cort)	Case marker detected.
Crohn's disease	Case	GSM5288110	8_47_Q_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Crohn's disease	Case	GSM5288111	19_83_Q_IS	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Crohn's disease (CD); Disease activity: Quiescent (Q); Treatment: Immunosuppressors (IS)	Case marker detected.
Ulcerative colitis	Case	GSM5288112	22_1_Q_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Quiescent (Q); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288113	23_21_Q_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Quiescent (Q); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288114	24_22_Q_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Quiescent (Q); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288115	28_85_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288116	29_85_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288117	31_20_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288118	32_20_AM_5ASA	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: 5-ASA	Case marker detected.
Ulcerative colitis	Case	GSM5288119	36_55_AM_TNF	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Moderate activity (AM); Treatment: Anti-TNFbiologics (TNF)	Case marker detected.
Ulcerative colitis	Case	GSM5288120	38_90_AS_Cort	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Ulcerative colitis (UC); Disease activity: Severe activity (AS); Treatment: Corticoids (Cort)	Case marker detected.
Control	Control	GSM5288109	46_50	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Heathy control	Sample-local control marker detected.
Healthy control	Control	GSM5288121	42_2	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Healthy control; Disease activity: NA; Treatment: NA	Sample-local control marker detected.
Healthy control	Control	GSM5288122	43_9	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Healthy control; Disease activity: NA; Treatment: NA	Sample-local control marker detected.
Healthy control	Control	GSM5288123	44_18	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Healthy control; Disease activity: NA; Treatment: NA	Sample-local control marker detected.
Healthy control	Control	GSM5288124	45_41	Intestinal biopsy Tissue: Intestinal biopsy; Disease state: Healthy control; Disease activity: NA; Treatment: NA	Sample-local control marker detected.

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