GSE174159 matching samples

GSM5288086

Uncertain

6_24_AM_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 6_24_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288086
sample_title: 6_24_AM_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

GSM5288087

Uncertain

9_23_Q_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 9_23_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288087
sample_title: 9_23_Q_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics  (TNF)

GSM5288088

Uncertain

12_54_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 12_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288088
sample_title: 12_54_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288089

Uncertain

20_84_Q_IS

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 20_84_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288089
sample_title: 20_84_Q_IS
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

GSM5288090

Uncertain

7_91_AM_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 7_91_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288090
sample_title: 7_91_AM_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

GSM5288091

Uncertain

10_99_Q_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 10_99_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288091
sample_title: 10_99_Q_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics  (TNF)

GSM5288092

Uncertain

13_54_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 13_54_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288092
sample_title: 13_54_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288093

Uncertain

17_3_Q_IS

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 17_3_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288093
sample_title: 17_3_Q_IS
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

GSM5288094

Uncertain

2_57_Q_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 2_57_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288094
sample_title: 2_57_Q_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

GSM5288095

Uncertain

11_100_Q_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 11_100_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288095
sample_title: 11_100_Q_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics  (TNF)

GSM5288096

Uncertain

18_7_Q_IS

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 18_7_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288096
sample_title: 18_7_Q_IS
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

GSM5288097

Uncertain

1_28_Q_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 1_28_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288097
sample_title: 1_28_Q_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

GSM5288098

Uncertain

4_80_Q_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
- 4_80_Q_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288098
sample_title: 4_80_Q_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: Non treated (NT)

GSM5288099

Uncertain

5_82_AM_NT

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Treatment case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
- 5_82_AM_NT intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288099
sample_title: 5_82_AM_NT
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: Non treated (NT)

GSM5288100

Uncertain

15_94_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 15_94_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288100
sample_title: 15_94_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288101

Uncertain

21_1_Q_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 21_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288101
sample_title: 21_1_Q_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

GSM5288102

Uncertain

26_49_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 26_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288102
sample_title: 26_49_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288103

Uncertain

27_49_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 27_49_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288103
sample_title: 27_49_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288104

Uncertain

35_68_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 35_68_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288104
sample_title: 35_68_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288105

Uncertain

37_55_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 37_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288105
sample_title: 37_55_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288106

Uncertain

39_93_AS_Cort

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 39_93_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288106
sample_title: 39_93_AS_Cort
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

GSM5288107

Uncertain

40_44_AS_Cort

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 40_44_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288107
sample_title: 40_44_AS_Cort
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

GSM5288108

Uncertain

41_96_AS_Cort

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 41_96_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288108
sample_title: 41_96_AS_Cort
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

GSM5288109

Uncertain

46_50

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control
- 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control
- 46_50 intestinal biopsy tissue: intestinal biopsy; disease state: heathy control

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: heathy control
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288109
sample_title: 46_50
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: heathy control

GSM5288110

Uncertain

8_47_Q_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
- 8_47_Q_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288110
sample_title: 8_47_Q_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: anti-TNFbiologics  (TNF)

GSM5288111

Uncertain

19_83_Q_IS

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
- 19_83_Q_IS intestinal biopsy tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288111
sample_title: 19_83_Q_IS
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Crohn's disease (CD); disease activity: quiescent (Q); treatment: immunosuppressors (IS)

GSM5288112

Uncertain

22_1_Q_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 22_1_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288112
sample_title: 22_1_Q_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

GSM5288113

Uncertain

23_21_Q_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 23_21_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288113
sample_title: 23_21_Q_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

GSM5288114

Uncertain

24_22_Q_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
- 24_22_Q_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288114
sample_title: 24_22_Q_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: quiescent (Q); treatment: 5-ASA

GSM5288115

Uncertain

28_85_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 28_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288115
sample_title: 28_85_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288116

Uncertain

29_85_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 29_85_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288116
sample_title: 29_85_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288117

Uncertain

31_20_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 31_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288117
sample_title: 31_20_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288118

Uncertain

32_20_AM_5ASA

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
- 32_20_AM_5ASA intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288118
sample_title: 32_20_AM_5ASA
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: 5-ASA

GSM5288119

Uncertain

36_55_AM_TNF

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
- 36_55_AM_TNF intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics (TNF)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288119
sample_title: 36_55_AM_TNF
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: moderate activity (AM); treatment: anti-TNFbiologics  (TNF)

GSM5288120

Uncertain

38_90_AS_Cort

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
- 38_90_AS_Cort intestinal biopsy tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288120
sample_title: 38_90_AS_Cort
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: Ulcerative colitis (UC); disease activity: severe activity (AS); treatment: corticoids (Cort)

GSM5288121

Uncertain

42_2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 42_2 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288121
sample_title: 42_2
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

GSM5288122

Uncertain

43_9

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 43_9 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288122
sample_title: 43_9
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

GSM5288123

Uncertain

44_18

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 44_18 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288123
sample_title: 44_18
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

GSM5288124

Uncertain

45_41

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
- 45_41 intestinal biopsy tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

Source metadata

Source name: intestinal biopsy
Characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM5288124
sample_title: 45_41
source_name: intestinal biopsy
characteristics: tissue: intestinal biopsy; disease state: healthy control; disease activity: NA; treatment: NA

Included samples (0)

Uncertain samples (39)

Excluded samples (0)