Matching samples

GSE17594 · NOD2 and human ileal gene expression

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

16 case / 4 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (20)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM438281

Uncertain

Unaffected ileum subject CD-124 N1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Meets requirement
        • Supported by the indexed evidence.
        • Unaffected ileum subject CD-124 N1 macroscopic disease unaffected ileum, resection specimen from initial Ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk al...
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Meets requirement
          • Supported by the indexed evidence.
          • Unaffected ileum subject CD-124 N1 macroscopic disease unaffected ileum, resection specimen from initial Ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk al...
        Source metadata
        Source name
        macroscopic disease unaffected ileum, resection specimen from initial Ileocolic resection
        Characteristics
        nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: single anti-TNF infusion 18 months prior; disease state: Crohn's disease; tissue: unaffected ileum
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM438281
sample_title: Unaffected ileum subject CD-124 N1
source_name: macroscopic disease unaffected ileum, resection specimen from initial Ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: single anti-TNF infusion 18 months prior; disease state: Crohn's disease; tissue: unaffected ileum

        GSM438282

        Uncertain

        Affected ileum subject CD-124 II

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Meets requirement
              • Supported by the indexed evidence.
              • Affected ileum subject CD-124 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele...
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Meets requirement
                • Supported by the indexed evidence.
                • Affected ileum subject CD-124 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele...
              Source metadata
              Source name
              macroscopic disease affected ileum, resection specimen from initial ileocolic resection
              Characteristics
              nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: single anti-TNF infusion 18 months prior; disease state: Crohn's disease; tissue: affected ileum
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM438282
sample_title: Affected ileum subject CD-124 II
source_name: macroscopic disease affected ileum, resection specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: single anti-TNF infusion 18 months prior; disease state: Crohn's disease; tissue: affected ileum

              GSM438283

              Uncertain

              Affected ileum subject CD-15 II

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Meets requirement
                    • Supported by the indexed evidence.
                    • Affected ileum subject CD-15 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: R702W/WT; nod2 risk alleles (r = risk alle...
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Meets requirement
                      • Supported by the indexed evidence.
                      • Affected ileum subject CD-15 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: R702W/WT; nod2 risk alleles (r = risk alle...
                    Source metadata
                    Source name
                    macroscopic disease affected ileum, resection specimen from initial ileocolic resection
                    Characteristics
                    nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM438283
sample_title: Affected ileum subject CD-15 II
source_name: macroscopic disease affected ileum, resection specimen from initial ileocolic resection
characteristics: nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                    GSM438284

                    Uncertain

                    Unaffected ileum subject CD-15 NI

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Meets requirement
                          • Supported by the indexed evidence.
                          • Unaffected ileum subject CD-15 NI macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection nod2 genotype: R702W/WT; nod2 risk alleles (r = risk ...
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Meets requirement
                            • Supported by the indexed evidence.
                            • Unaffected ileum subject CD-15 NI macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection nod2 genotype: R702W/WT; nod2 risk alleles (r = risk ...
                          Source metadata
                          Source name
                          macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection
                          Characteristics
                          nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM438284
sample_title: Unaffected ileum subject CD-15 NI
source_name: macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection
characteristics: nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                          GSM438285

                          Uncertain

                          Unaffected ileum subject CD-19 NI

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Meets requirement
                                • Supported by the indexed evidence.
                                • Unaffected ileum subject CD-19 NI macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk all...
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Meets requirement
                                  • Supported by the indexed evidence.
                                  • Unaffected ileum subject CD-19 NI macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk all...
                                Source metadata
                                Source name
                                macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection
                                Characteristics
                                nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM438285
sample_title: Unaffected ileum subject CD-19 NI
source_name: macroscopic disease unaffected ileum, resection specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                GSM438286

                                Uncertain

                                Affected ileum subject CD-19 II

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Meets requirement
                                      • Supported by the indexed evidence.
                                      • Affected ileum subject CD-19 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele,...
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Meets requirement
                                        • Supported by the indexed evidence.
                                        • Affected ileum subject CD-19 II macroscopic disease affected ileum, resection specimen from initial ileocolic resection nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele,...
                                      Source metadata
                                      Source name
                                      macroscopic disease affected ileum, resection specimen from initial ileocolic resection
                                      Characteristics
                                      nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM438286
sample_title: Affected ileum subject CD-19 II
source_name: macroscopic disease affected ileum, resection specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                      GSM438287

                                      Uncertain

                                      Unaffected ileum subject CD-196 NI

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                              • Supported by the indexed evidence.
                                              • specimen category excludes: Biofluid — Meets requirement
                                                • Supported by the indexed evidence.
                                                Source metadata
                                                Source name
                                                macroscopic disease unaffected ileum, specimen from initial ileocolic resection
                                                Characteristics
                                                nod2 genotype: InsC/R702W; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (2 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                                Description
                                                Not reported
                                                Indexed organism evidence
                                                INFERRED · PARENT_INHERITED: Not reported
                                                Indexed assay evidence
                                                INFERRED · PARENT_INHERITED: Not reported
                                                Source
                                                GEO
                                                Original indexed metadata
                                                sample_accession: GSM438287
sample_title: Unaffected ileum subject CD-196 NI
source_name: macroscopic disease unaffected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: InsC/R702W; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (2 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                                GSM438288

                                                Uncertain

                                                Affected ileum subject CD-196 II

                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                Requirements and decision evidence
                                                • organism: Homo sapiens — Insufficient evidence
                                                  • The required value is not reported.
                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                    • The required value is not reported.
                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                      • The required value is not reported.
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Meets requirement
                                                          • Supported by the indexed evidence.
                                                          Source metadata
                                                          Source name
                                                          macroscopic disease affected ileum, specimen from initial ileocolic resection
                                                          Characteristics
                                                          nod2 genotype: InsC/R702W; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (2 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                                          Description
                                                          Not reported
                                                          Indexed organism evidence
                                                          INFERRED · PARENT_INHERITED: Not reported
                                                          Indexed assay evidence
                                                          INFERRED · PARENT_INHERITED: Not reported
                                                          Source
                                                          GEO
                                                          Original indexed metadata
                                                          sample_accession: GSM438288
sample_title: Affected ileum subject CD-196 II
source_name: macroscopic disease affected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: InsC/R702W; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (2 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                                          GSM438289

                                                          Uncertain

                                                          Affected ileum subject CD-22 II

                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                          Requirements and decision evidence
                                                          • organism: Homo sapiens — Insufficient evidence
                                                            • The required value is not reported.
                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                              • The required value is not reported.
                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                • The required value is not reported.
                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                  • Supported by the indexed evidence.
                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    Source metadata
                                                                    Source name
                                                                    macroscopic disease affected ileum, specimen from initial ileocolic resection
                                                                    Characteristics
                                                                    nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM438289
sample_title: Affected ileum subject CD-22 II
source_name: macroscopic disease affected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                                                    GSM438290

                                                                    Uncertain

                                                                    Unaffected ileum subject CD-22 NI

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                            • Supported by the indexed evidence.
                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                              • Supported by the indexed evidence.
                                                                              Source metadata
                                                                              Source name
                                                                              macroscopic disease unaffected ileum, specimen from initial ileocolic resection
                                                                              Characteristics
                                                                              nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                                                              Description
                                                                              Not reported
                                                                              Indexed organism evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Indexed assay evidence
                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                              Source
                                                                              GEO
                                                                              Original indexed metadata
                                                                              sample_accession: GSM438290
sample_title: Unaffected ileum subject CD-22 NI
source_name: macroscopic disease unaffected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                                                              GSM438291

                                                                              Uncertain

                                                                              Unaffected ileum subject CD-235 NI

                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                              Requirements and decision evidence
                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                        • Supported by the indexed evidence.
                                                                                        Source metadata
                                                                                        Source name
                                                                                        macroscopic disease unaffected ileum, specimen from initial ileocolic resection
                                                                                        Characteristics
                                                                                        nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                                                                        Description
                                                                                        Not reported
                                                                                        Indexed organism evidence
                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                        Indexed assay evidence
                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                        Source
                                                                                        GEO
                                                                                        Original indexed metadata
                                                                                        sample_accession: GSM438291
sample_title: Unaffected ileum subject CD-235 NI
source_name: macroscopic disease unaffected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                                                                        GSM438292

                                                                                        Uncertain

                                                                                        Affected ileum subject CD-235 II

                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                        Requirements and decision evidence
                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                • Supported by the indexed evidence.
                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  macroscopic disease affected ileum, specimen from initial ileocolic resection
                                                                                                  Characteristics
                                                                                                  nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM438292
sample_title: Affected ileum subject CD-235 II
source_name: macroscopic disease affected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: R702W/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r (1 allele); smoking history: no smoking history prior; tnf infusion: no anti TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                                                                                  GSM438293

                                                                                                  Uncertain

                                                                                                  Unaffected ileum subject CD-256 NI

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                          • Supported by the indexed evidence.
                                                                                                          • specimen category excludes: Biofluid — Meets requirement
                                                                                                            • Supported by the indexed evidence.
                                                                                                            Source metadata
                                                                                                            Source name
                                                                                                            macroscopic disease unaffected ileum, specimen from initial ileocolic resection.
                                                                                                            Characteristics
                                                                                                            nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                                                                                            Description
                                                                                                            Not reported
                                                                                                            Indexed organism evidence
                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                            Indexed assay evidence
                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                            Source
                                                                                                            GEO
                                                                                                            Original indexed metadata
                                                                                                            sample_accession: GSM438293
sample_title: Unaffected ileum subject CD-256 NI
source_name: macroscopic disease unaffected ileum, specimen from initial ileocolic resection.
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                                                                                            GSM438294

                                                                                                            Uncertain

                                                                                                            Affected ileum subject CD-256 II

                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                            Requirements and decision evidence
                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Meets requirement
                                                                                                                      • Supported by the indexed evidence.
                                                                                                                      Source metadata
                                                                                                                      Source name
                                                                                                                      macroscopic disease affected ileum, specimen from initial ileocolic resection
                                                                                                                      Characteristics
                                                                                                                      nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                                                                                                      Description
                                                                                                                      Not reported
                                                                                                                      Indexed organism evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Indexed assay evidence
                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                      Source
                                                                                                                      GEO
                                                                                                                      Original indexed metadata
                                                                                                                      sample_accession: GSM438294
sample_title: Affected ileum subject CD-256 II
source_name: macroscopic disease affected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                                                                                                      GSM438295

                                                                                                                      Uncertain

                                                                                                                      Unaffected ileum subject CD-312 NI

                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                      Requirements and decision evidence
                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                              • Supported by the indexed evidence.
                                                                                                                              • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                macroscopic disease unaffected ileum, specimen from initial ileocolic resection
                                                                                                                                Characteristics
                                                                                                                                nod2 genotype: InsC/InsC; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM438295
sample_title: Unaffected ileum subject CD-312 NI
source_name: macroscopic disease unaffected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: InsC/InsC; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: unaffected ileum

                                                                                                                                GSM438296

                                                                                                                                Uncertain

                                                                                                                                Affected ileum subject CD-312 II

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                        • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                          • Supported by the indexed evidence.
                                                                                                                                          Source metadata
                                                                                                                                          Source name
                                                                                                                                          macroscopic disease affected ileum, specimen from initial ileocolic resection
                                                                                                                                          Characteristics
                                                                                                                                          nod2 genotype: InsC/InsC; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum
                                                                                                                                          Description
                                                                                                                                          Not reported
                                                                                                                                          Indexed organism evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Indexed assay evidence
                                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                          Source
                                                                                                                                          GEO
                                                                                                                                          Original indexed metadata
                                                                                                                                          sample_accession: GSM438296
sample_title: Affected ileum subject CD-312 II
source_name: macroscopic disease affected ileum, specimen from initial ileocolic resection
characteristics: nod2 genotype: InsC/InsC; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2r; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: Crohn's disease; tissue: affected ileum

                                                                                                                                          GSM438297

                                                                                                                                          Uncertain

                                                                                                                                          Unaffected ileum subject N13 NI

                                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                          Requirements and decision evidence
                                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                    • Supported by the indexed evidence.
                                                                                                                                                    Source metadata
                                                                                                                                                    Source name
                                                                                                                                                    macroscopic disease unaffected ileum, specimen from initial total colectomy
                                                                                                                                                    Characteristics
                                                                                                                                                    nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum
                                                                                                                                                    Description
                                                                                                                                                    Not reported
                                                                                                                                                    Indexed organism evidence
                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                    Indexed assay evidence
                                                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                    Source
                                                                                                                                                    GEO
                                                                                                                                                    Original indexed metadata
                                                                                                                                                    sample_accession: GSM438297
sample_title: Unaffected ileum subject N13 NI
source_name: macroscopic disease unaffected ileum, specimen from initial total colectomy
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum

                                                                                                                                                    GSM438298

                                                                                                                                                    Uncertain

                                                                                                                                                    Unaffected ileum subject N15 NI

                                                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                    Requirements and decision evidence
                                                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                                            • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              macroscopic disease unaffected ileum, specimen from initial right colectomy
                                                                                                                                                              Characteristics
                                                                                                                                                              nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM438298
sample_title: Unaffected ileum subject N15 NI
source_name: macroscopic disease unaffected ileum, specimen from initial right colectomy
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum

                                                                                                                                                              GSM438299

                                                                                                                                                              Uncertain

                                                                                                                                                              Unaffected ileum subject N33 NI

                                                                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                              Requirements and decision evidence
                                                                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                  • The required value is not reported.
                                                                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                    • The required value is not reported.
                                                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                                                      • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                                        Source metadata
                                                                                                                                                                        Source name
                                                                                                                                                                        macroscopic disease unaffected ileum, specimen from initial total colectomy
                                                                                                                                                                        Characteristics
                                                                                                                                                                        nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum
                                                                                                                                                                        Description
                                                                                                                                                                        Not reported
                                                                                                                                                                        Indexed organism evidence
                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                        Indexed assay evidence
                                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                        Source
                                                                                                                                                                        GEO
                                                                                                                                                                        Original indexed metadata
                                                                                                                                                                        sample_accession: GSM438299
sample_title: Unaffected ileum subject N33 NI
source_name: macroscopic disease unaffected ileum, specimen from initial total colectomy
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr  control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum

                                                                                                                                                                        GSM438300

                                                                                                                                                                        Uncertain

                                                                                                                                                                        Unaffected ileum subject N34 NI

                                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                                          • The required value is not reported.
                                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                                            • The required value is not reported.
                                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                                              • The required value is not reported.
                                                                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                                                                • specimen category excludes: Biofluid — Meets requirement
                                                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                                                  Source metadata
                                                                                                                                                                                  Source name
                                                                                                                                                                                  macroscopic disease unaffected ileum, specimen from initial total colectomy
                                                                                                                                                                                  Characteristics
                                                                                                                                                                                  nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum
                                                                                                                                                                                  Description
                                                                                                                                                                                  Not reported
                                                                                                                                                                                  Indexed organism evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Indexed assay evidence
                                                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                                                  Source
                                                                                                                                                                                  GEO
                                                                                                                                                                                  Original indexed metadata
                                                                                                                                                                                  sample_accession: GSM438300
sample_title: Unaffected ileum subject N34 NI
source_name: macroscopic disease unaffected ileum, specimen from initial total colectomy
characteristics: nod2 genotype: WT/WT; nod2 risk alleles (r = risk allele, nr= not risk allele): NOD2nr  control patient; smoking history: no smoking history prior; tnf infusion: no anti-TNF medication history prior; disease state: control; tissue: unaffected ileum

                                                                                                                                                                                  Excluded samples (0)

                                                                                                                                                                                  No excluded samples.