Matching samples

GSE189136 · Targeting MyD88 Downregulates Inflammatory Mediators and Pathogenic Processes in PBMC From DMARDs-Naïve Rheumatoid Arthritis Patients

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (0)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

No uncertain samples.

Excluded samples (19)

GSM5694892

Excluded

PBMC_CS1_UTx

Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment control marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Does not meet requirement
        • The reported value differs from the selected requirement.
        • PBMC_CS1_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Healthy
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Does not meet requirement
          • The reported value differs from the selected requirement.
          • PBMC_CS1_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Healthy
        Source metadata
        Source name
        PBMC
        Characteristics
        tissue: PBMC; treatment: Untreated; diagnosis: Healthy
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM5694892
sample_title: PBMC_CS1_UTx
source_name: PBMC
characteristics: tissue: PBMC; treatment: Untreated; diagnosis: Healthy

        GSM5694893

        Excluded

        PBMC_CS4_UTx

        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment control marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Does not meet requirement
              • The reported value differs from the selected requirement.
              • PBMC_CS4_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Healthy
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Does not meet requirement
                • The reported value differs from the selected requirement.
                • PBMC_CS4_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Healthy
              Source metadata
              Source name
              PBMC
              Characteristics
              tissue: PBMC; treatment: Untreated; diagnosis: Healthy
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM5694893
sample_title: PBMC_CS4_UTx
source_name: PBMC
characteristics: tissue: PBMC; treatment: Untreated; diagnosis: Healthy

              GSM5694894

              Excluded

              PBMC_RA3_UTx

              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment control marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Does not meet requirement
                    • The reported value differs from the selected requirement.
                    • PBMC_RA3_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Does not meet requirement
                      • The reported value differs from the selected requirement.
                      • PBMC_RA3_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                    Source metadata
                    Source name
                    PBMC
                    Characteristics
                    tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM5694894
sample_title: PBMC_RA3_UTx
source_name: PBMC
characteristics: tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis

                    GSM5694895

                    Excluded

                    PBMC_RA4_UTx

                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment control marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Does not meet requirement
                          • The reported value differs from the selected requirement.
                          • PBMC_RA4_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Does not meet requirement
                            • The reported value differs from the selected requirement.
                            • PBMC_RA4_UTx PBMC tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                          Source metadata
                          Source name
                          PBMC
                          Characteristics
                          tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM5694895
sample_title: PBMC_RA4_UTx
source_name: PBMC
characteristics: tissue: PBMC; treatment: Untreated; diagnosis: Rheumatoid arthritis

                          GSM5694896

                          Excluded

                          PBMC_RA2_LPS

                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Does not meet requirement
                                • The reported value differs from the selected requirement.
                                • PBMC_RA2_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Does not meet requirement
                                  • The reported value differs from the selected requirement.
                                  • PBMC_RA2_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                Source metadata
                                Source name
                                PBMC
                                Characteristics
                                tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM5694896
sample_title: PBMC_RA2_LPS
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis

                                GSM5694897

                                Excluded

                                PBMC_RA3_LPS

                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                      • The reported value differs from the selected requirement.
                                      • PBMC_RA3_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Does not meet requirement
                                        • The reported value differs from the selected requirement.
                                        • PBMC_RA3_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                      Source metadata
                                      Source name
                                      PBMC
                                      Characteristics
                                      tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM5694897
sample_title: PBMC_RA3_LPS
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis

                                      GSM5694898

                                      Excluded

                                      PBMC_RA4_LPS

                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                            • The reported value differs from the selected requirement.
                                            • PBMC_RA4_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Does not meet requirement
                                              • The reported value differs from the selected requirement.
                                              • PBMC_RA4_LPS PBMC tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                            Source metadata
                                            Source name
                                            PBMC
                                            Characteristics
                                            tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM5694898
sample_title: PBMC_RA4_LPS
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS; diagnosis: Rheumatoid arthritis

                                            GSM5694899

                                            Excluded

                                            PBMC_RA2_IL-1B

                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Explicit characteristic comparison arm detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                  • The reported value differs from the selected requirement.
                                                  • PBMC_RA2_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                    • The reported value differs from the selected requirement.
                                                    • PBMC_RA2_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                  Source metadata
                                                  Source name
                                                  PBMC
                                                  Characteristics
                                                  tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM5694899
sample_title: PBMC_RA2_IL-1B
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis

                                                  GSM5694900

                                                  Excluded

                                                  PBMC_RA3_IL-1B

                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Explicit characteristic comparison arm detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                        • The reported value differs from the selected requirement.
                                                        • PBMC_RA3_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                          • The reported value differs from the selected requirement.
                                                          • PBMC_RA3_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                        Source metadata
                                                        Source name
                                                        PBMC
                                                        Characteristics
                                                        tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM5694900
sample_title: PBMC_RA3_IL-1B
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis

                                                        GSM5694901

                                                        Excluded

                                                        PBMC_RA4_IL-1B

                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Explicit characteristic comparison arm detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                              • The reported value differs from the selected requirement.
                                                              • PBMC_RA4_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                • The reported value differs from the selected requirement.
                                                                • PBMC_RA4_IL-1B PBMC tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                              Source metadata
                                                              Source name
                                                              PBMC
                                                              Characteristics
                                                              tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM5694901
sample_title: PBMC_RA4_IL-1B
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta]; diagnosis: Rheumatoid arthritis

                                                              GSM5694902

                                                              Excluded

                                                              PBMC_RA2_ST2825

                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                    • The reported value differs from the selected requirement.
                                                                    • PBMC_RA2_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                      • The reported value differs from the selected requirement.
                                                                      • PBMC_RA2_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                    Source metadata
                                                                    Source name
                                                                    PBMC
                                                                    Characteristics
                                                                    tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM5694902
sample_title: PBMC_RA2_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis

                                                                    GSM5694903

                                                                    Excluded

                                                                    PBMC_RA3_ST2825

                                                                    Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Does not meet requirement
                                                                          • The reported value differs from the selected requirement.
                                                                          • PBMC_RA3_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Does not meet requirement
                                                                            • The reported value differs from the selected requirement.
                                                                            • PBMC_RA3_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                          Source metadata
                                                                          Source name
                                                                          PBMC
                                                                          Characteristics
                                                                          tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM5694903
sample_title: PBMC_RA3_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis

                                                                          GSM5694904

                                                                          Excluded

                                                                          PBMC_RA4_ST2825

                                                                          Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                • The reported value differs from the selected requirement.
                                                                                • PBMC_RA4_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Does not meet requirement
                                                                                  • The reported value differs from the selected requirement.
                                                                                  • PBMC_RA4_ST2825 PBMC tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                                Source metadata
                                                                                Source name
                                                                                PBMC
                                                                                Characteristics
                                                                                tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM5694904
sample_title: PBMC_RA4_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: ST2825; diagnosis: Rheumatoid arthritis

                                                                                GSM5694905

                                                                                Excluded

                                                                                PBMC_RA2_LPS_ST2825

                                                                                Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                      • The reported value differs from the selected requirement.
                                                                                      • PBMC_RA2_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Does not meet requirement
                                                                                        • The reported value differs from the selected requirement.
                                                                                        • PBMC_RA2_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                      Source metadata
                                                                                      Source name
                                                                                      PBMC
                                                                                      Characteristics
                                                                                      tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM5694905
sample_title: PBMC_RA2_LPS_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis

                                                                                      GSM5694906

                                                                                      Excluded

                                                                                      PBMC_RA3_LPS_ST2825

                                                                                      Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                            • The reported value differs from the selected requirement.
                                                                                            • PBMC_RA3_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Does not meet requirement
                                                                                              • The reported value differs from the selected requirement.
                                                                                              • PBMC_RA3_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                            Source metadata
                                                                                            Source name
                                                                                            PBMC
                                                                                            Characteristics
                                                                                            tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM5694906
sample_title: PBMC_RA3_LPS_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis

                                                                                            GSM5694907

                                                                                            Excluded

                                                                                            PBMC_RA4_LPS_ST2825

                                                                                            Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                  • The reported value differs from the selected requirement.
                                                                                                  • PBMC_RA4_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                    • The reported value differs from the selected requirement.
                                                                                                    • PBMC_RA4_LPS_ST2825 PBMC tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  PBMC
                                                                                                  Characteristics
                                                                                                  tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM5694907
sample_title: PBMC_RA4_LPS_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: LPS + ST2825; diagnosis: Rheumatoid arthritis

                                                                                                  GSM5694908

                                                                                                  Excluded

                                                                                                  PBMC_RA2_IL-1B_ST2825

                                                                                                  Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                        • The reported value differs from the selected requirement.
                                                                                                        • PBMC_RA2_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                          • The reported value differs from the selected requirement.
                                                                                                          • PBMC_RA2_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        PBMC
                                                                                                        Characteristics
                                                                                                        tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM5694908
sample_title: PBMC_RA2_IL-1B_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis

                                                                                                        GSM5694909

                                                                                                        Excluded

                                                                                                        PBMC_RA3_IL-1B_ST2825

                                                                                                        Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                              • The reported value differs from the selected requirement.
                                                                                                              • PBMC_RA3_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                • The reported value differs from the selected requirement.
                                                                                                                • PBMC_RA3_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              PBMC
                                                                                                              Characteristics
                                                                                                              tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM5694909
sample_title: PBMC_RA3_IL-1B_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis

                                                                                                              GSM5694910

                                                                                                              Excluded

                                                                                                              PBMC_RA4_IL-1B_ST2825

                                                                                                              Excluded: at least one selected requirement is not met. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Does not meet requirement. specimen category excludes: Biofluid — Does not meet requirement. Study role: Treatment code resolved from the GEO Series design and sample label.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Does not meet requirement
                                                                                                                    • The reported value differs from the selected requirement.
                                                                                                                    • PBMC_RA4_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Does not meet requirement
                                                                                                                      • The reported value differs from the selected requirement.
                                                                                                                      • PBMC_RA4_IL-1B_ST2825 PBMC tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    PBMC
                                                                                                                    Characteristics
                                                                                                                    tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM5694910
sample_title: PBMC_RA4_IL-1B_ST2825
source_name: PBMC
characteristics: tissue: PBMC; treatment: IL-1[beta] + ST2825; diagnosis: Rheumatoid arthritis