These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
28_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743705
sample_title: 28_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
28_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743706
sample_title: 28_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
29_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743707
sample_title: 29_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
29_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743708
sample_title: 29_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
29_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743709
sample_title: 29_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
29_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743710
sample_title: 29_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
23_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743711
sample_title: 23_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
13_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743712
sample_title: 13_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
23_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743713
sample_title: 23_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
13_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743714
sample_title: 13_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
24_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743715
sample_title: 24_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
13_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743716
sample_title: 13_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
24_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743717
sample_title: 24_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
14_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743718
sample_title: 14_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
24_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743719
sample_title: 24_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
24_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743720
sample_title: 24_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 24; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
14_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743721
sample_title: 14_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
14_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743722
sample_title: 14_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
15_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743723
sample_title: 15_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
12_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743724
sample_title: 12_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
15_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743725
sample_title: 15_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
12_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743726
sample_title: 12_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
15_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743727
sample_title: 15_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
12_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743728
sample_title: 12_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
28_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743729
sample_title: 28_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
23_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743730
sample_title: 23_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
15_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743731
sample_title: 15_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 15; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
12_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743732
sample_title: 12_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
28_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743733
sample_title: 28_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 28; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
23_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743734
sample_title: 23_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
13_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743735
sample_title: 13_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
38_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743736
sample_title: 38_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
38_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743737
sample_title: 38_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
12_4h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743738
sample_title: 12_4h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: UC
38_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743739
sample_title: 38_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
12_24h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743740
sample_title: 12_24h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: UC
39_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743741
sample_title: 39_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
12_72h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 72h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743742
sample_title: 12_72h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 12; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 72h; diagnosis: UC
39_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743743
sample_title: 39_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
13_4h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743744
sample_title: 13_4h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: CD
43_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743745
sample_title: 43_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
39_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743746
sample_title: 39_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
13_24h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743747
sample_title: 13_24h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: CD
43_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743748
sample_title: 43_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
23_4h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743749
sample_title: 23_4h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
39_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743750
sample_title: 39_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 39; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
13_72h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 72h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743751
sample_title: 13_72h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 13; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 72h; diagnosis: CD
43_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743752
sample_title: 43_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
23_24h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743753
sample_title: 23_24h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
40_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743754
sample_title: 40_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
14_4h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743755
sample_title: 14_4h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 4h; diagnosis: CD
43_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743756
sample_title: 43_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 43; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: UC
23_72h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 72h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743757
sample_title: 23_72h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 23; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 72h; diagnosis: UC
40_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743758
sample_title: 40_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
14_24h_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743759
sample_title: 14_24h_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 24h; diagnosis: CD
44_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743760
sample_title: 44_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
40_14w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743761
sample_title: 40_14w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 40; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 14w; diagnosis: CD
44_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743762
sample_title: 44_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
44_14w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743763
sample_title: 44_14w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 44; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
29_4h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743764
sample_title: 29_4h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
38_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743765
sample_title: 38_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 38; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
29_24h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743766
sample_title: 29_24h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
29_72h_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 72h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743767
sample_title: 29_72h_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 29; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Non-remission; time point: 72h; diagnosis: UC
14_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743768
sample_title: 14_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 14; cohort: Discovery - Infliximab; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
3_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743769
sample_title: 3_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
5_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743770
sample_title: 5_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
3_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743771
sample_title: 3_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
5_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743772
sample_title: 5_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
3_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743773
sample_title: 3_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
7_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743774
sample_title: 7_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
3_14w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743775
sample_title: 3_14w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 3; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
7_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743776
sample_title: 7_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
4_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743777
sample_title: 4_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
7_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743778
sample_title: 7_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
4_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743779
sample_title: 4_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
7_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743780
sample_title: 7_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 7; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
4_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743781
sample_title: 4_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
8_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743782
sample_title: 8_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
4_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743783
sample_title: 4_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 4; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
8_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743784
sample_title: 8_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
5_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743785
sample_title: 5_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
8_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743786
sample_title: 8_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
5_4h_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743787
sample_title: 5_4h_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 4h; diagnosis: UC
8_14w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743788
sample_title: 8_14w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 8; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
5_24h_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743789
sample_title: 5_24h_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 24h; diagnosis: UC
5_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743790
sample_title: 5_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 5; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
41_24h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743791
sample_title: 41_24h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: CD
20_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743792
sample_title: 20_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
20_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743793
sample_title: 20_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
25_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743794
sample_title: 25_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
22_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743795
sample_title: 22_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
25_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743796
sample_title: 25_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
22_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743797
sample_title: 22_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
25_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743798
sample_title: 25_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
46_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743799
sample_title: 46_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
22_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743800
sample_title: 22_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
26_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743801
sample_title: 26_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
46_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743802
sample_title: 46_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
19_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743803
sample_title: 19_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
22_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743804
sample_title: 22_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 22; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
26_4h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743805
sample_title: 26_4h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: CD
19_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743806
sample_title: 19_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
26_24h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743807
sample_title: 26_24h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: CD
46_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743808
sample_title: 46_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 46; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
19_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743809
sample_title: 19_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
19_14w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743810
sample_title: 19_14w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 19; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
26_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743811
sample_title: 26_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
37_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743812
sample_title: 37_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
20_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743813
sample_title: 20_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
25_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743814
sample_title: 25_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
26_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743815
sample_title: 26_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
37_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743816
sample_title: 37_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
25_4h_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 4h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743817
sample_title: 25_4h_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 4h; diagnosis: CD
41_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743818
sample_title: 41_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
26_14w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743819
sample_title: 26_14w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 26; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: CD
37_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743820
sample_title: 37_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 37; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
20_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743821
sample_title: 20_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 20; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
25_24h_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 24h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743822
sample_title: 25_24h_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 25; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 24h; diagnosis: CD
41_4h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743823
sample_title: 41_4h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 41; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: CD
32_24h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743824
sample_title: 32_24h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
30_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743825
sample_title: 30_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: UC
30_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743826
sample_title: 30_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: UC
30_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743827
sample_title: 30_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: UC
30_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743828
sample_title: 30_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 30; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: UC
33_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743829
sample_title: 33_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
31_baseline_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743830
sample_title: 31_baseline_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: baseline; diagnosis: CD
33_4h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743831
sample_title: 33_4h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
31_2w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743832
sample_title: 31_2w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 2w; diagnosis: CD
33_24h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743833
sample_title: 33_24h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 24h; diagnosis: UC
31_6w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743834
sample_title: 31_6w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 6w; diagnosis: CD
31_14w_VDZ_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743835
sample_title: 31_14w_VDZ_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 31; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Remission; time point: 14w; diagnosis: CD
33_2w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743836
sample_title: 33_2w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
32_baseline_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743837
sample_title: 32_baseline_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
33_6w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743838
sample_title: 33_6w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
32_4h_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743839
sample_title: 32_4h_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 32; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 4h; diagnosis: UC
33_14w_VDZ_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743840
sample_title: 33_14w_VDZ_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: 33; cohort: Discovery - Vedolizumab; treatment: Vedolizumab; remission at week 14: Non-remission; time point: 14w; diagnosis: UC
RC_063_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743841
sample_title: RC_063_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_144_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743842
sample_title: RC_144_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_022_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743843
sample_title: RC_022_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_010_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743844
sample_title: RC_010_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
RC_054_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743845
sample_title: RC_054_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_055_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_055; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743846
sample_title: RC_055_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_055; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_116_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743847
sample_title: RC_116_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_144_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743848
sample_title: RC_144_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_116_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743849
sample_title: RC_116_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_054_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743850
sample_title: RC_054_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_042_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743851
sample_title: RC_042_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_004_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743852
sample_title: RC_004_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
RC_012_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743853
sample_title: RC_012_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_142_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743854
sample_title: RC_142_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_031_2w_ADA_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743855
sample_title: RC_031_2w_ADA_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_010_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743856
sample_title: RC_010_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_116_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743857
sample_title: RC_116_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_116; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_060_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743858
sample_title: RC_060_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_154_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743859
sample_title: RC_154_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
RC_111_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743860
sample_title: RC_111_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_070_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743861
sample_title: RC_070_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
RC_140_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743862
sample_title: RC_140_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_070_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743863
sample_title: RC_070_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
RC_036_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743864
sample_title: RC_036_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_142_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743865
sample_title: RC_142_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_042_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743866
sample_title: RC_042_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_022_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743867
sample_title: RC_022_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_060_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743868
sample_title: RC_060_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
RC_054_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743869
sample_title: RC_054_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_054; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_010_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743870
sample_title: RC_010_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_010; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
RC_031_6w_ADA_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743871
sample_title: RC_031_6w_ADA_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_060_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743872
sample_title: RC_060_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_060; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
RC_063_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743873
sample_title: RC_063_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_140_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743874
sample_title: RC_140_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_016_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743875
sample_title: RC_016_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_112_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743876
sample_title: RC_112_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
RC_161_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743877
sample_title: RC_161_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
RC_012_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743878
sample_title: RC_012_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_144_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743879
sample_title: RC_144_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_144; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: CD
RC_111_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743880
sample_title: RC_111_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_162_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743881
sample_title: RC_162_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: CD
RC_162_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743882
sample_title: RC_162_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_022_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743883
sample_title: RC_022_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_022; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_111_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743884
sample_title: RC_111_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_111; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_142_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743885
sample_title: RC_142_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_142; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_162_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743886
sample_title: RC_162_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_162; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
RC_161_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743887
sample_title: RC_161_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_042_6w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743888
sample_title: RC_042_6w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_042; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 6w; diagnosis: UC
RC_004_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743889
sample_title: RC_004_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_016_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743890
sample_title: RC_016_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_012_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743891
sample_title: RC_012_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_012; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_140_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743892
sample_title: RC_140_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_140; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_070_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743893
sample_title: RC_070_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_070; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
RC_036_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743894
sample_title: RC_036_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: CD
RC_063_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743895
sample_title: RC_063_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_063; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_112_baseline_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743896
sample_title: RC_112_baseline_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: baseline; diagnosis: UC
RC_161_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743897
sample_title: RC_161_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_161; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
RC_004_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743898
sample_title: RC_004_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_004; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: CD
RC_007_baseline_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Treatment control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_007; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743899
sample_title: RC_007_baseline_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_007; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: baseline; diagnosis: CD
RC_112_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743900
sample_title: RC_112_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_112; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
RC_031_baseline_ADA_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743901
sample_title: RC_031_baseline_ADA_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_031; cohort: Replication; treatment: Adalimumab; remission at week 14: Non-remission; time point: baseline; diagnosis: UC
RC_154_2w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743902
sample_title: RC_154_2w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 2w; diagnosis: UC
RC_036_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. Case: organism: Homo sapiens — Insufficient evidence. Case: assay type: bulk RNA-seq — Insufficient evidence. Case: specimen category: Tissue or biopsy — Insufficient evidence. Control: organism: Homo sapiens — Insufficient evidence. Control: assay type: bulk RNA-seq — Insufficient evidence. Control: specimen category: Tissue or biopsy — Insufficient evidence. Study role: No explicit case or control marker detected.
Requirements and decision evidence
-
Case: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Case: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Case: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Case: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Case: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
-
Control: organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
Control: assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
Control: specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
Control: excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
Control: specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743903
sample_title: RC_036_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_036; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: CD
RC_016_2w_IFX_NR_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743904
sample_title: RC_016_2w_IFX_NR_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_016; cohort: Replication; treatment: Infliximab; remission at week 14: Non-remission; time point: 2w; diagnosis: UC
RC_154_6w_IFX_R_RNA
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Meets requirement
- Supported by the indexed evidence.
Source metadata
- Source name
- Peripheral Whole-Blood
- Characteristics
- patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM5743905
sample_title: RC_154_6w_IFX_R_RNA
source_name: Peripheral Whole-Blood
characteristics: patient: RC_154; cohort: Replication; treatment: Infliximab; remission at week 14: Remission; time point: 6w; diagnosis: UC