These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.
CNTO1275UCO3001-100001 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100001 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100001 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100001 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100001 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249277
sample_title: CNTO1275UCO3001-100001 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100001; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100002 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100002 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249278
sample_title: CNTO1275UCO3001-100002 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100002; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100003 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100003 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249279
sample_title: CNTO1275UCO3001-100003 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100003; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100004 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100004 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100004 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100004 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100004 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249280
sample_title: CNTO1275UCO3001-100004 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100004; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100005 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100005 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100005 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100005 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100005 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249281
sample_title: CNTO1275UCO3001-100005 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100005; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100007 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100007 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249282
sample_title: CNTO1275UCO3001-100007 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100007; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100008 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100008 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100008 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100008 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100008 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249283
sample_title: CNTO1275UCO3001-100008 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100008; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100009 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100009 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249284
sample_title: CNTO1275UCO3001-100009 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100009; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100010 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100010 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249285
sample_title: CNTO1275UCO3001-100010 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100010; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100011 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100011 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100011 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100011 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100011 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249286
sample_title: CNTO1275UCO3001-100011 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100011; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100013 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100013 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100013 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100013 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100013 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249287
sample_title: CNTO1275UCO3001-100013 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100013; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100014 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100014 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100014 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100014 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100014 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249288
sample_title: CNTO1275UCO3001-100014 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100014; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100015 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100015 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100015 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100015 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100015 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249289
sample_title: CNTO1275UCO3001-100015 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100015; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100018 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100018 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100018 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100018 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100018 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249290
sample_title: CNTO1275UCO3001-100018 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100018; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100020 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100020 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249291
sample_title: CNTO1275UCO3001-100020 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100020; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100021 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100021 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249292
sample_title: CNTO1275UCO3001-100021 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100021; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100022 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100022 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100022 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100022 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100022 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249293
sample_title: CNTO1275UCO3001-100022 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100022; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100023 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100023 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100023 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100023 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100023 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249294
sample_title: CNTO1275UCO3001-100023 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100023; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100024 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100024 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100024 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100024 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100024 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249295
sample_title: CNTO1275UCO3001-100024 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100024; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100026 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100026 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100026 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100026 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100026 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249296
sample_title: CNTO1275UCO3001-100026 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100026; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100028 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100028 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249297
sample_title: CNTO1275UCO3001-100028 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100028; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100030 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100030 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249298
sample_title: CNTO1275UCO3001-100030 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100030; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100031 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100031 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100031 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100031 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100031 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249299
sample_title: CNTO1275UCO3001-100031 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100031; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100032 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100032 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249300
sample_title: CNTO1275UCO3001-100032 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100032; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100034 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100034 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100034 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100034 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100034 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249301
sample_title: CNTO1275UCO3001-100034 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100034; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100036 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100036 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249302
sample_title: CNTO1275UCO3001-100036 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100036; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100037 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100037 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100037 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100037 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100037 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249303
sample_title: CNTO1275UCO3001-100037 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100037; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100040 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100040 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100040 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100040 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100040 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249304
sample_title: CNTO1275UCO3001-100040 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100040; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100043 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100043 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100043 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100043 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100043 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249305
sample_title: CNTO1275UCO3001-100043 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100043; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100045 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100045 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249306
sample_title: CNTO1275UCO3001-100045 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100045; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100046 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100046 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249307
sample_title: CNTO1275UCO3001-100046 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100046; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100047 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100047 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249308
sample_title: CNTO1275UCO3001-100047 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100047; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100048 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100048 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100048 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100048 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100048 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249309
sample_title: CNTO1275UCO3001-100048 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100048; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100050 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100050 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249310
sample_title: CNTO1275UCO3001-100050 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100050; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100051 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100051 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249311
sample_title: CNTO1275UCO3001-100051 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100051; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: N
CNTO1275UCO3001-100054 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100054 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249312
sample_title: CNTO1275UCO3001-100054 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100054; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100057 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100057 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100057 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100057 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100057 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249313
sample_title: CNTO1275UCO3001-100057 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100057; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100058 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100058 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249314
sample_title: CNTO1275UCO3001-100058 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100058; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100059 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100059 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100059 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100059 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100059 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249315
sample_title: CNTO1275UCO3001-100059 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100059; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100060 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100060 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100060 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100060 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100060 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249316
sample_title: CNTO1275UCO3001-100060 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100060; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100062 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100062 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249317
sample_title: CNTO1275UCO3001-100062 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100062; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100063 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100063 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100063 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100063 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100063 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249318
sample_title: CNTO1275UCO3001-100063 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100063; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100064 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100064 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249319
sample_title: CNTO1275UCO3001-100064 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100064; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100065 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100065 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249320
sample_title: CNTO1275UCO3001-100065 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100065; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100068 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100068 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100068 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100068 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100068 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249321
sample_title: CNTO1275UCO3001-100068 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100068; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100069 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100069 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100069 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100069 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100069 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249322
sample_title: CNTO1275UCO3001-100069 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100069; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100074 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100074 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100074 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100074 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100074 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249323
sample_title: CNTO1275UCO3001-100074 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100074; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100075 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100075 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100075 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100075 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100075 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249324
sample_title: CNTO1275UCO3001-100075 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100075; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100076 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100076 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249325
sample_title: CNTO1275UCO3001-100076 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100076; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100078 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100078 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249326
sample_title: CNTO1275UCO3001-100078 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100078; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100080 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100080 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249327
sample_title: CNTO1275UCO3001-100080 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100080; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100081 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100081 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249328
sample_title: CNTO1275UCO3001-100081 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100081; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100082 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100082 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249329
sample_title: CNTO1275UCO3001-100082 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100082; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100083 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100083 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100083 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100083 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100083 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249330
sample_title: CNTO1275UCO3001-100083 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100083; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100084 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100084 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249331
sample_title: CNTO1275UCO3001-100084 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100084; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100085 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100085 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249332
sample_title: CNTO1275UCO3001-100085 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100085; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100087 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100087 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100087 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100087 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100087 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249333
sample_title: CNTO1275UCO3001-100087 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100087; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100089 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100089 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249334
sample_title: CNTO1275UCO3001-100089 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100089; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100091 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100091 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249335
sample_title: CNTO1275UCO3001-100091 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100091; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100092 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100092 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249336
sample_title: CNTO1275UCO3001-100092 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100092; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100095 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100095 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249337
sample_title: CNTO1275UCO3001-100095 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100095; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100096 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100096 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100096 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100096 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100096 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249338
sample_title: CNTO1275UCO3001-100096 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100096; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100097 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100097 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249339
sample_title: CNTO1275UCO3001-100097 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100097; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100098 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100098 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100098 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100098 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100098 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249340
sample_title: CNTO1275UCO3001-100098 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100098; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100100 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100100 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249341
sample_title: CNTO1275UCO3001-100100 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100100; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100101 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100101 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100101 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100101 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100101 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249342
sample_title: CNTO1275UCO3001-100101 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100101; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100102 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100102 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249343
sample_title: CNTO1275UCO3001-100102 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100102; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100103 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249344
sample_title: CNTO1275UCO3001-100103 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100106 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100106 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100106 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100106 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100106 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249345
sample_title: CNTO1275UCO3001-100106 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100106; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100108 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100108 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100108 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100108 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100108 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249346
sample_title: CNTO1275UCO3001-100108 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100108; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100109 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100109 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100109 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100109 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100109 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249347
sample_title: CNTO1275UCO3001-100109 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100109; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100110 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100110 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100110 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100110 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100110 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249348
sample_title: CNTO1275UCO3001-100110 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100110; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100111 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100111 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249349
sample_title: CNTO1275UCO3001-100111 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100111; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100112 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100112 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249350
sample_title: CNTO1275UCO3001-100112 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100112; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100113 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100113 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100113 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100113 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100113 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249351
sample_title: CNTO1275UCO3001-100113 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100113; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100114 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100114 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249352
sample_title: CNTO1275UCO3001-100114 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100114; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100116 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100116 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249353
sample_title: CNTO1275UCO3001-100116 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100116; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100118 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100118 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100118 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100118 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100118 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249354
sample_title: CNTO1275UCO3001-100118 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100118; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100121 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100121 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249355
sample_title: CNTO1275UCO3001-100121 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100121; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100122 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100122 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100122 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100122 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100122 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249356
sample_title: CNTO1275UCO3001-100122 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100122; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100123 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100123 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249357
sample_title: CNTO1275UCO3001-100123 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100123; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100124 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100124 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100124 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100124 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100124 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249358
sample_title: CNTO1275UCO3001-100124 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100124; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100125 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100125 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100125 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100125 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100125 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249359
sample_title: CNTO1275UCO3001-100125 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100125; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100126 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100126 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249360
sample_title: CNTO1275UCO3001-100126 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100126; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100127 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100127 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100127 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100127 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100127 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249361
sample_title: CNTO1275UCO3001-100127 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100127; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100129 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100129 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100129 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100129 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100129 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249362
sample_title: CNTO1275UCO3001-100129 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100129; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100130 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100130 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100130 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100130 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100130 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249363
sample_title: CNTO1275UCO3001-100130 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100130; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100131 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100131 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249364
sample_title: CNTO1275UCO3001-100131 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100131; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100132 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100132 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249365
sample_title: CNTO1275UCO3001-100132 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100132; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100134 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100134 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249366
sample_title: CNTO1275UCO3001-100134 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100134; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100135 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100135 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100135 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100135 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100135 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249367
sample_title: CNTO1275UCO3001-100135 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100135; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100136 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100136 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100136 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100136 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100136 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249368
sample_title: CNTO1275UCO3001-100136 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100136; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100137 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100137 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100137 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100137 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100137 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249369
sample_title: CNTO1275UCO3001-100137 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100137; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100138 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100138 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100138 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100138 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100138 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249370
sample_title: CNTO1275UCO3001-100138 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100138; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100139 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100139 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249371
sample_title: CNTO1275UCO3001-100139 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100139; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100140 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100140 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100140 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100140 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100140 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249372
sample_title: CNTO1275UCO3001-100140 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100140; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100141 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100141 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100141 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100141 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100141 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249373
sample_title: CNTO1275UCO3001-100141 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100141; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100143 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100143 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100143 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100143 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100143 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249374
sample_title: CNTO1275UCO3001-100143 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100143; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100144 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100144 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100144 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100144 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100144 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249375
sample_title: CNTO1275UCO3001-100144 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100144; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100145 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100145 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100145 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100145 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100145 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249376
sample_title: CNTO1275UCO3001-100145 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100145; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100146 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100146 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249377
sample_title: CNTO1275UCO3001-100146 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100146; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100147 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100147 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100147 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100147 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100147 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249378
sample_title: CNTO1275UCO3001-100147 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100147; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100148 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100148 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100148 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100148 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100148 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249379
sample_title: CNTO1275UCO3001-100148 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100148; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100149 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100149 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100149 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100149 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100149 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249380
sample_title: CNTO1275UCO3001-100149 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100149; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100150 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100150 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249381
sample_title: CNTO1275UCO3001-100150 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100150; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100151 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100151 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249382
sample_title: CNTO1275UCO3001-100151 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100151; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100152 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100152 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249383
sample_title: CNTO1275UCO3001-100152 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100152; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100154 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100154 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249384
sample_title: CNTO1275UCO3001-100154 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100154; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100155 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100155 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100155 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100155 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100155 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249385
sample_title: CNTO1275UCO3001-100155 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100155; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100156 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100156 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100156 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100156 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100156 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249386
sample_title: CNTO1275UCO3001-100156 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100156; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100157 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100157 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100157 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100157 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100157 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249387
sample_title: CNTO1275UCO3001-100157 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100157; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100160 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100160 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249388
sample_title: CNTO1275UCO3001-100160 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100160; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100161 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100161 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249389
sample_title: CNTO1275UCO3001-100161 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100161; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100162 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100162 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249390
sample_title: CNTO1275UCO3001-100162 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100162; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100164 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100164 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249391
sample_title: CNTO1275UCO3001-100164 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100164; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100165 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100165 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100165 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100165 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100165 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249392
sample_title: CNTO1275UCO3001-100165 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100165; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100167 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100167 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249393
sample_title: CNTO1275UCO3001-100167 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100167; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100168 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100168 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249394
sample_title: CNTO1275UCO3001-100168 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100168; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100169 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100169 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100169 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100169 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100169 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249395
sample_title: CNTO1275UCO3001-100169 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100169; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100170 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100170 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100170 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100170 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100170 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249396
sample_title: CNTO1275UCO3001-100170 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100170; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100172 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249397
sample_title: CNTO1275UCO3001-100172 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100174 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100174 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100174 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100174 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100174 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249398
sample_title: CNTO1275UCO3001-100174 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100174; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100175 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100175 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100175 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100175 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100175 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249399
sample_title: CNTO1275UCO3001-100175 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100175; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100176 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100176 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100176 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100176 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100176 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249400
sample_title: CNTO1275UCO3001-100176 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100176; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100179 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100179 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100179 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100179 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100179 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249401
sample_title: CNTO1275UCO3001-100179 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100179; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100180 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100180 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100180 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100180 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100180 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249402
sample_title: CNTO1275UCO3001-100180 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100180; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100181 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100181 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100181 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100181 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100181 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249403
sample_title: CNTO1275UCO3001-100181 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100181; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100182 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100182 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100182 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100182 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100182 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249404
sample_title: CNTO1275UCO3001-100182 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100182; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100183 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100183 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100183 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100183 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100183 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249405
sample_title: CNTO1275UCO3001-100183 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100183; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100184 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100184 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100184 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100184 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100184 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249406
sample_title: CNTO1275UCO3001-100184 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100184; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100185 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100185 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100185 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100185 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100185 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249407
sample_title: CNTO1275UCO3001-100185 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100185; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100186 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100186 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100186 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100186 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100186 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249408
sample_title: CNTO1275UCO3001-100186 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100186; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100187 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100187 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100187 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100187 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100187 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249409
sample_title: CNTO1275UCO3001-100187 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100187; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100189 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100189 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100189 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100189 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100189 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249410
sample_title: CNTO1275UCO3001-100189 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100189; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100191 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100191 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100191 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100191 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100191 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249411
sample_title: CNTO1275UCO3001-100191 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100191; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100192 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100192 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100192 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100192 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100192 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249412
sample_title: CNTO1275UCO3001-100192 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100192; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100194 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100194 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100194 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100194 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100194 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249413
sample_title: CNTO1275UCO3001-100194 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100194; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100195 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100195 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100195 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100195 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100195 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249414
sample_title: CNTO1275UCO3001-100195 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100195; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100197 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100197 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100197 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100197 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100197 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249415
sample_title: CNTO1275UCO3001-100197 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100197; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100200 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100200 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100200 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100200 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100200 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249416
sample_title: CNTO1275UCO3001-100200 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100200; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100201 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100201 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100201 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100201 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100201 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249417
sample_title: CNTO1275UCO3001-100201 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100201; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100202 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100202 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100202 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100202 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100202 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249418
sample_title: CNTO1275UCO3001-100202 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100202; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100203 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100203 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100203 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100203 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100203 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249419
sample_title: CNTO1275UCO3001-100203 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100203; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100205 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100205 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100205 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100205 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100205 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249420
sample_title: CNTO1275UCO3001-100205 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100205; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100206 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100206 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100206 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100206 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100206 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249421
sample_title: CNTO1275UCO3001-100206 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100206; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100207 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100207 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100207 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100207 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100207 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249422
sample_title: CNTO1275UCO3001-100207 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100207; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100208 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100208 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100208 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100208 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100208 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249423
sample_title: CNTO1275UCO3001-100208 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100208; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100209 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100209 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100209 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100209 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100209 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249424
sample_title: CNTO1275UCO3001-100209 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100209; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100210 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100210 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100210 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100210 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100210 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249425
sample_title: CNTO1275UCO3001-100210 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100210; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100211 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100211 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100211 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100211 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100211 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249426
sample_title: CNTO1275UCO3001-100211 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100211; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100212 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249427
sample_title: CNTO1275UCO3001-100212 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100213 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100213 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100213 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100213 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100213 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249428
sample_title: CNTO1275UCO3001-100213 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100213; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100215 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100215 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100215 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100215 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100215 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249429
sample_title: CNTO1275UCO3001-100215 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100215; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100216 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100216 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100216 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100216 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100216 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249430
sample_title: CNTO1275UCO3001-100216 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100216; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100218 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100218 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100218 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100218 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100218 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249431
sample_title: CNTO1275UCO3001-100218 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100218; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100219 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100219 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100219 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100219 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100219 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249432
sample_title: CNTO1275UCO3001-100219 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100219; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100220 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100220 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100220 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100220 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100220 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249433
sample_title: CNTO1275UCO3001-100220 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100220; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100221 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100221 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100221 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100221 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100221 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249434
sample_title: CNTO1275UCO3001-100221 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100221; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100224 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100224 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100224 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100224 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100224 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249435
sample_title: CNTO1275UCO3001-100224 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100224; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100225 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100225 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100225 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100225 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100225 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249436
sample_title: CNTO1275UCO3001-100225 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100225; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100226 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100226 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100226 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100226 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100226 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249437
sample_title: CNTO1275UCO3001-100226 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100226; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100227 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100227 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100227 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100227 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100227 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249438
sample_title: CNTO1275UCO3001-100227 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100227; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100228 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100228 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100228 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100228 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100228 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249439
sample_title: CNTO1275UCO3001-100228 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100228; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100229 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100229 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100229 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100229 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100229 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249440
sample_title: CNTO1275UCO3001-100229 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100229; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100230 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100230 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100230 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100230 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100230 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249441
sample_title: CNTO1275UCO3001-100230 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100230; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100231 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100231 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100231 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100231 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100231 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249442
sample_title: CNTO1275UCO3001-100231 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100231; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100232 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100232 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100232 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100232 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100232 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249443
sample_title: CNTO1275UCO3001-100232 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100232; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100233 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100233 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100233 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100233 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100233 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249444
sample_title: CNTO1275UCO3001-100233 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100233; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100236 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249445
sample_title: CNTO1275UCO3001-100236 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100238 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100238 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100238 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100238 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100238 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249446
sample_title: CNTO1275UCO3001-100238 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100238; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100239 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100239 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100239 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100239 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100239 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249447
sample_title: CNTO1275UCO3001-100239 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100239; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100242 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100242 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100242 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100242 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100242 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249448
sample_title: CNTO1275UCO3001-100242 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100242; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100246 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100246 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100246 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100246 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100246 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249449
sample_title: CNTO1275UCO3001-100246 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100246; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100247 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100247 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100247 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100247 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100247 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249450
sample_title: CNTO1275UCO3001-100247 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100247; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100248 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100248 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100248 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100248 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100248 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249451
sample_title: CNTO1275UCO3001-100248 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100248; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100249 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100249 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100249 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100249 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100249 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249452
sample_title: CNTO1275UCO3001-100249 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100249; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100253 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100253 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100253 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100253 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100253 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249453
sample_title: CNTO1275UCO3001-100253 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100253; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100254 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100254 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100254 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100254 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100254 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249454
sample_title: CNTO1275UCO3001-100254 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100254; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100256 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100256 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100256 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100256 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100256 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249455
sample_title: CNTO1275UCO3001-100256 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100256; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100259 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100259 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100259 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100259 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100259 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249456
sample_title: CNTO1275UCO3001-100259 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100259; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100260 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100260 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100260 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100260 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100260 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249457
sample_title: CNTO1275UCO3001-100260 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100260; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100261 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100261 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100261 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100261 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100261 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249458
sample_title: CNTO1275UCO3001-100261 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100261; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100262 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100262 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100262 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100262 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100262 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249459
sample_title: CNTO1275UCO3001-100262 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100262; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100263 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100263 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100263 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100263 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100263 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249460
sample_title: CNTO1275UCO3001-100263 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100263; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100264 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100264 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100264 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100264 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100264 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: NA; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249461
sample_title: CNTO1275UCO3001-100264 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100264; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: NA; clinical remission at week 8: N
CNTO1275UCO3001-100265 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100265 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100265 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100265 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100265 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249462
sample_title: CNTO1275UCO3001-100265 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100265; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100266 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100266 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100266 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100266 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100266 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249463
sample_title: CNTO1275UCO3001-100266 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100266; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100267 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100267 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100267 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100267 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100267 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249464
sample_title: CNTO1275UCO3001-100267 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100267; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100271 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100271 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100271 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100271 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100271 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249465
sample_title: CNTO1275UCO3001-100271 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100271; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100273 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100273 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100273 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100273 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100273 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249466
sample_title: CNTO1275UCO3001-100273 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100273; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100274 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100274 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100274 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100274 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100274 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249467
sample_title: CNTO1275UCO3001-100274 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100274; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100276 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100276 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100276 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100276 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100276 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249468
sample_title: CNTO1275UCO3001-100276 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100276; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100279 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100279 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100279 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100279 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100279 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249469
sample_title: CNTO1275UCO3001-100279 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100279; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100280 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100280 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100280 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100280 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100280 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249470
sample_title: CNTO1275UCO3001-100280 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100280; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100281 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100281 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100281 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100281 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100281 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249471
sample_title: CNTO1275UCO3001-100281 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100281; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100282 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100282 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100282 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100282 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100282 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249472
sample_title: CNTO1275UCO3001-100282 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100282; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100283 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100283 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100283 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100283 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100283 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249473
sample_title: CNTO1275UCO3001-100283 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100283; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100284 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100284 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100284 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100284 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100284 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249474
sample_title: CNTO1275UCO3001-100284 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100284; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100285 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100285 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100285 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100285 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100285 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249475
sample_title: CNTO1275UCO3001-100285 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100285; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100287 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100287 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100287 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100287 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100287 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249476
sample_title: CNTO1275UCO3001-100287 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100287; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100288 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100288 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100288 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100288 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100288 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249477
sample_title: CNTO1275UCO3001-100288 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100288; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100289 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100289 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100289 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100289 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100289 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249478
sample_title: CNTO1275UCO3001-100289 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100289; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100290 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100290 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100290 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100290 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100290 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249479
sample_title: CNTO1275UCO3001-100290 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100290; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100291 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100291 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100291 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100291 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100291 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249480
sample_title: CNTO1275UCO3001-100291 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100291; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100293 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100293 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100293 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100293 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100293 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249481
sample_title: CNTO1275UCO3001-100293 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100293; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100294 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100294 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100294 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100294 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100294 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249482
sample_title: CNTO1275UCO3001-100294 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100294; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100296 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100296 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100296 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100296 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100296 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249483
sample_title: CNTO1275UCO3001-100296 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100296; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100299 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100299 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100299 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100299 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100299 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249484
sample_title: CNTO1275UCO3001-100299 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100299; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100302 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249485
sample_title: CNTO1275UCO3001-100302 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100303 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100303 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100303 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100303 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100303 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249486
sample_title: CNTO1275UCO3001-100303 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100303; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100304 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100304 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100304 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100304 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100304 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249487
sample_title: CNTO1275UCO3001-100304 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100304; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100305 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100305 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100305 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100305 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100305 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249488
sample_title: CNTO1275UCO3001-100305 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100305; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100306 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100306 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100306 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100306 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100306 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249489
sample_title: CNTO1275UCO3001-100306 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100306; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100308 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100308 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100308 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100308 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100308 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249490
sample_title: CNTO1275UCO3001-100308 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100308; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100309 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100309 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100309 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100309 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100309 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249491
sample_title: CNTO1275UCO3001-100309 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100309; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100311 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100311 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100311 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100311 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100311 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249492
sample_title: CNTO1275UCO3001-100311 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100311; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100312 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100312 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100312 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100312 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100312 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249493
sample_title: CNTO1275UCO3001-100312 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100312; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100313 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100313 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100313 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100313 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100313 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249494
sample_title: CNTO1275UCO3001-100313 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100313; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100314 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100314 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100314 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100314 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100314 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249495
sample_title: CNTO1275UCO3001-100314 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100314; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100315 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100315 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100315 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100315 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100315 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249496
sample_title: CNTO1275UCO3001-100315 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100315; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100316 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100316 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100316 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100316 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100316 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249497
sample_title: CNTO1275UCO3001-100316 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100316; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100318 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100318 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100318 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100318 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100318 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249498
sample_title: CNTO1275UCO3001-100318 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100318; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100319 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100319 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100319 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100319 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100319 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249499
sample_title: CNTO1275UCO3001-100319 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100319; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100321 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100321 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100321 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100321 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100321 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249500
sample_title: CNTO1275UCO3001-100321 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100321; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100323 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100323 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100323 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100323 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100323 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249501
sample_title: CNTO1275UCO3001-100323 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100323; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100324 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100324 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100324 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100324 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100324 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249502
sample_title: CNTO1275UCO3001-100324 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100324; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100326 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100326 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100326 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100326 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100326 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249503
sample_title: CNTO1275UCO3001-100326 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100326; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100327 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100327 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100327 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100327 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100327 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249504
sample_title: CNTO1275UCO3001-100327 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100327; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100328 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100328 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100328 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100328 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100328 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249505
sample_title: CNTO1275UCO3001-100328 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100328; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100329 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100329 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100329 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100329 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100329 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249506
sample_title: CNTO1275UCO3001-100329 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100329; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100330 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100330 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100330 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100330 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100330 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249507
sample_title: CNTO1275UCO3001-100330 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100330; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100331 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100331 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100331 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100331 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100331 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249508
sample_title: CNTO1275UCO3001-100331 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100331; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100333 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100333 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100333 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100333 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100333 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249509
sample_title: CNTO1275UCO3001-100333 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100333; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100335 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100335 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100335 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100335 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100335 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249510
sample_title: CNTO1275UCO3001-100335 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100335; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100336 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100336 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100336 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100336 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100336 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249511
sample_title: CNTO1275UCO3001-100336 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100336; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100337 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100337 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100337 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100337 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100337 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249512
sample_title: CNTO1275UCO3001-100337 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100337; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100338 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100338 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100338 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100338 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100338 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249513
sample_title: CNTO1275UCO3001-100338 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100338; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100339 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100339 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100339 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100339 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100339 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249514
sample_title: CNTO1275UCO3001-100339 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100339; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100340 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100340 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100340 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100340 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100340 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249515
sample_title: CNTO1275UCO3001-100340 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100340; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100341 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100341 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100341 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100341 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100341 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249516
sample_title: CNTO1275UCO3001-100341 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100341; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100342 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100342 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100342 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100342 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100342 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249517
sample_title: CNTO1275UCO3001-100342 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100342; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100343 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100343 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100343 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100343 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100343 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249518
sample_title: CNTO1275UCO3001-100343 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100343; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100344 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100344 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100344 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100344 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100344 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249519
sample_title: CNTO1275UCO3001-100344 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100344; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100345 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100345 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100345 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100345 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100345 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249520
sample_title: CNTO1275UCO3001-100345 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100345; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100346 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100346 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100346 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100346 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100346 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249521
sample_title: CNTO1275UCO3001-100346 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100346; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100349 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100349 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100349 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100349 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100349 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249522
sample_title: CNTO1275UCO3001-100349 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100349; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100351 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100351 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100351 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100351 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100351 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249523
sample_title: CNTO1275UCO3001-100351 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100351; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100352 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100352 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100352 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100352 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100352 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249524
sample_title: CNTO1275UCO3001-100352 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100352; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100353 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100353 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100353 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100353 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100353 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249525
sample_title: CNTO1275UCO3001-100353 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100353; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100354 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100354 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100354 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100354 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100354 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249526
sample_title: CNTO1275UCO3001-100354 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100354; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100355 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100355 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100355 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100355 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100355 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249527
sample_title: CNTO1275UCO3001-100355 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100355; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100356 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100356 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100356 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100356 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100356 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249528
sample_title: CNTO1275UCO3001-100356 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100356; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100357 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100357 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100357 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100357 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100357 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249529
sample_title: CNTO1275UCO3001-100357 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100357; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100360 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100360 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100360 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100360 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100360 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249530
sample_title: CNTO1275UCO3001-100360 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100360; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100362 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100362 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100362 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100362 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100362 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249531
sample_title: CNTO1275UCO3001-100362 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100362; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100363 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100363 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100363 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100363 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100363 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249532
sample_title: CNTO1275UCO3001-100363 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100363; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100365 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100365 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100365 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100365 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100365 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249533
sample_title: CNTO1275UCO3001-100365 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100365; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100366 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100366 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100366 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100366 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100366 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249534
sample_title: CNTO1275UCO3001-100366 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100366; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100367 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100367 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100367 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100367 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100367 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249535
sample_title: CNTO1275UCO3001-100367 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100367; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100368 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100368 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100368 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100368 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100368 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249536
sample_title: CNTO1275UCO3001-100368 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100368; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100369 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100369 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100369 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100369 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100369 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249537
sample_title: CNTO1275UCO3001-100369 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100369; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100370 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100370 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100370 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100370 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100370 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249538
sample_title: CNTO1275UCO3001-100370 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100370; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100371 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100371 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100371 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100371 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100371 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249539
sample_title: CNTO1275UCO3001-100371 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100371; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100372 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100372 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100372 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100372 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100372 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249540
sample_title: CNTO1275UCO3001-100372 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100372; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100373 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100373 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100373 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100373 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100373 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249541
sample_title: CNTO1275UCO3001-100373 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100373; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100375 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100375 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100375 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100375 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100375 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249542
sample_title: CNTO1275UCO3001-100375 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100375; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100376 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100376 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100376 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100376 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100376 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249543
sample_title: CNTO1275UCO3001-100376 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100376; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100377 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100377 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100377 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100377 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100377 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249544
sample_title: CNTO1275UCO3001-100377 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100377; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100378 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100378 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100378 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100378 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100378 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249545
sample_title: CNTO1275UCO3001-100378 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100378; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100379 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100379 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100379 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100379 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100379 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249546
sample_title: CNTO1275UCO3001-100379 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100379; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100380 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100380 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100380 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100380 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100380 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249547
sample_title: CNTO1275UCO3001-100380 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100380; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100381 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100381 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100381 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100381 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100381 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249548
sample_title: CNTO1275UCO3001-100381 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100381; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100385 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100385 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100385 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100385 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100385 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249549
sample_title: CNTO1275UCO3001-100385 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100385; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100387 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100387 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100387 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100387 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100387 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249550
sample_title: CNTO1275UCO3001-100387 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100387; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100388 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100388 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100388 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100388 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100388 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249551
sample_title: CNTO1275UCO3001-100388 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100388; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100391 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100391 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100391 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100391 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100391 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249552
sample_title: CNTO1275UCO3001-100391 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100391; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100393 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100393 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100393 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100393 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100393 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249553
sample_title: CNTO1275UCO3001-100393 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100393; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100394 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100394 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100394 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100394 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100394 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249554
sample_title: CNTO1275UCO3001-100394 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100394; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100395 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100395 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100395 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100395 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100395 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249555
sample_title: CNTO1275UCO3001-100395 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100395; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100396 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100396 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100396 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100396 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100396 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249556
sample_title: CNTO1275UCO3001-100396 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100396; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100397 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100397 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100397 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100397 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100397 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249557
sample_title: CNTO1275UCO3001-100397 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100397; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
CNTO1275UCO3001-100398 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100398 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100398 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100398 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100398 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249558
sample_title: CNTO1275UCO3001-100398 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100398; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100399 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100399 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100399 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100399 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100399 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249559
sample_title: CNTO1275UCO3001-100399 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100399; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100403 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100403 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100403 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100403 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100403 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249560
sample_title: CNTO1275UCO3001-100403 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100403; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100404 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100404 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100404 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100404 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100404 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249561
sample_title: CNTO1275UCO3001-100404 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100404; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100406 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100406 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100406 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100406 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100406 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249562
sample_title: CNTO1275UCO3001-100406 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100406; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100408 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100408 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100408 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100408 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100408 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249563
sample_title: CNTO1275UCO3001-100408 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100408; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100409 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100409 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100409 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100409 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100409 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249564
sample_title: CNTO1275UCO3001-100409 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100409; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100410 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100410 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100410 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100410 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100410 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249565
sample_title: CNTO1275UCO3001-100410 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100410; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100411 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100411 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100411 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100411 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100411 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249566
sample_title: CNTO1275UCO3001-100411 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100411; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100412 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100412 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100412 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100412 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100412 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249567
sample_title: CNTO1275UCO3001-100412 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100412; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100413 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100413 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100413 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100413 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100413 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249568
sample_title: CNTO1275UCO3001-100413 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100413; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100414 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100414 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100414 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100414 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100414 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249569
sample_title: CNTO1275UCO3001-100414 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100414; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100415 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100415 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100415 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100415 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100415 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249570
sample_title: CNTO1275UCO3001-100415 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100415; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: N
CNTO1275UCO3001-100416 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100416 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100416 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100416 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100416 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249571
sample_title: CNTO1275UCO3001-100416 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100416; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100417 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100417 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100417 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100417 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100417 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249572
sample_title: CNTO1275UCO3001-100417 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100417; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100418 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100418 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100418 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100418 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100418 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249573
sample_title: CNTO1275UCO3001-100418 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100418; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100419 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100419 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100419 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100419 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100419 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249574
sample_title: CNTO1275UCO3001-100419 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100419; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100420 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100420 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100420 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100420 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100420 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249575
sample_title: CNTO1275UCO3001-100420 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100420; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100421 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100421 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100421 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100421 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100421 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249576
sample_title: CNTO1275UCO3001-100421 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100421; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100423 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100423 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100423 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100423 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100423 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249577
sample_title: CNTO1275UCO3001-100423 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100423; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100425 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100425 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100425 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100425 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100425 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249578
sample_title: CNTO1275UCO3001-100425 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100425; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100426 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100426 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100426 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100426 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100426 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249579
sample_title: CNTO1275UCO3001-100426 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100426; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100427 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100427 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100427 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100427 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100427 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249580
sample_title: CNTO1275UCO3001-100427 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100427; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100429 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100429 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100429 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100429 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100429 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249581
sample_title: CNTO1275UCO3001-100429 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100429; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100430 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100430 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100430 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100430 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100430 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249582
sample_title: CNTO1275UCO3001-100430 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100430; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100431 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100431 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100431 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100431 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100431 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249583
sample_title: CNTO1275UCO3001-100431 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100431; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100433 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100433 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100433 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100433 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100433 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249584
sample_title: CNTO1275UCO3001-100433 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100433; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100435 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100435 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100435 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100435 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100435 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249585
sample_title: CNTO1275UCO3001-100435 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100435; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100436 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100436 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100436 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100436 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100436 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249586
sample_title: CNTO1275UCO3001-100436 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100436; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100437 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100437 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100437 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100437 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100437 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249587
sample_title: CNTO1275UCO3001-100437 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100437; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100438 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100438 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100438 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100438 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100438 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249588
sample_title: CNTO1275UCO3001-100438 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100438; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100441 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100441 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100441 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100441 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100441 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249589
sample_title: CNTO1275UCO3001-100441 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100441; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100443 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100443 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100443 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100443 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100443 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249590
sample_title: CNTO1275UCO3001-100443 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100443; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100444 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100444 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100444 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100444 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100444 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249591
sample_title: CNTO1275UCO3001-100444 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100444; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100445 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100445 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100445 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100445 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100445 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249592
sample_title: CNTO1275UCO3001-100445 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100445; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100446 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100446 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100446 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100446 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100446 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249593
sample_title: CNTO1275UCO3001-100446 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100446; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100447 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100447 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100447 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100447 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100447 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249594
sample_title: CNTO1275UCO3001-100447 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100447; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100448 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100448 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100448 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100448 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100448 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249595
sample_title: CNTO1275UCO3001-100448 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100448; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100449 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100449 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100449 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100449 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100449 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249596
sample_title: CNTO1275UCO3001-100449 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100449; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100450 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100450 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100450 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100450 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100450 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249597
sample_title: CNTO1275UCO3001-100450 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100450; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100451 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100451 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100451 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100451 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100451 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249598
sample_title: CNTO1275UCO3001-100451 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100451; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100452 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100452 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100452 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100452 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100452 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249599
sample_title: CNTO1275UCO3001-100452 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100452; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100453 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100453 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100453 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100453 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100453 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249600
sample_title: CNTO1275UCO3001-100453 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100453; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100454 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100454 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100454 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100454 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100454 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249601
sample_title: CNTO1275UCO3001-100454 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100454; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100455 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100455 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100455 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100455 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100455 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249602
sample_title: CNTO1275UCO3001-100455 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100455; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100457 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100457 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100457 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100457 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100457 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249603
sample_title: CNTO1275UCO3001-100457 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100457; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100460 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100460 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100460 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100460 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100460 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249604
sample_title: CNTO1275UCO3001-100460 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100460; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100461 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100461 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100461 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100461 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100461 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249605
sample_title: CNTO1275UCO3001-100461 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100461; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100462 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100462 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100462 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100462 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100462 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249606
sample_title: CNTO1275UCO3001-100462 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100462; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100463 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100463 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100463 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100463 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100463 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249607
sample_title: CNTO1275UCO3001-100463 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100463; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100465 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100465 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100465 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100465 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100465 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249608
sample_title: CNTO1275UCO3001-100465 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100465; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100467 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100467 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100467 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100467 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100467 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249609
sample_title: CNTO1275UCO3001-100467 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100467; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100468 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100468 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100468 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100468 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100468 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249610
sample_title: CNTO1275UCO3001-100468 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100468; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100472 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100472 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100472 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100472 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100472 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249611
sample_title: CNTO1275UCO3001-100472 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100472; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100473 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100473 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100473 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100473 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100473 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249612
sample_title: CNTO1275UCO3001-100473 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100473; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100479 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100479 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100479 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100479 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100479 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249613
sample_title: CNTO1275UCO3001-100479 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100479; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100480 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100480 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100480 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100480 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100480 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249614
sample_title: CNTO1275UCO3001-100480 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100480; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100483 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100483 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100483 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100483 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100483 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249615
sample_title: CNTO1275UCO3001-100483 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100483; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100486 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100486 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100486 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100486 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100486 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249616
sample_title: CNTO1275UCO3001-100486 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100486; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100488 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100488 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100488 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100488 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100488 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249617
sample_title: CNTO1275UCO3001-100488 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100488; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100493 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100493 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100493 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100493 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100493 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249618
sample_title: CNTO1275UCO3001-100493 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100493; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100494 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100494 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100494 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100494 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100494 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249619
sample_title: CNTO1275UCO3001-100494 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100494; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100495 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100495 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100495 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100495 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100495 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249620
sample_title: CNTO1275UCO3001-100495 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100495; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100496 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100496 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100496 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100496 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100496 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249621
sample_title: CNTO1275UCO3001-100496 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100496; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100497 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100497 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100497 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100497 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100497 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249622
sample_title: CNTO1275UCO3001-100497 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100497; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100499 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100499 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100499 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100499 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100499 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249623
sample_title: CNTO1275UCO3001-100499 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100499; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100501 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100501 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100501 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100501 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100501 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249624
sample_title: CNTO1275UCO3001-100501 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100501; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100502 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100502 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100502 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100502 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100502 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249625
sample_title: CNTO1275UCO3001-100502 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100502; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100506 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100506 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100506 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100506 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100506 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249626
sample_title: CNTO1275UCO3001-100506 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100506; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100507 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100507 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100507 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100507 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100507 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249627
sample_title: CNTO1275UCO3001-100507 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100507; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100508 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100508 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100508 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100508 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100508 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249628
sample_title: CNTO1275UCO3001-100508 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100508; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100509 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100509 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100509 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100509 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100509 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249629
sample_title: CNTO1275UCO3001-100509 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100509; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100511 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100511 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100511 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100511 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100511 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249630
sample_title: CNTO1275UCO3001-100511 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100511; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100512 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100512 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100512 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100512 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100512 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249631
sample_title: CNTO1275UCO3001-100512 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100512; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100513 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100513 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100513 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100513 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100513 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249632
sample_title: CNTO1275UCO3001-100513 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100513; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100514 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100514 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100514 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100514 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100514 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249633
sample_title: CNTO1275UCO3001-100514 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100514; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100515 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100515 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100515 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100515 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100515 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249634
sample_title: CNTO1275UCO3001-100515 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100515; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100516 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100516 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100516 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100516 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100516 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249635
sample_title: CNTO1275UCO3001-100516 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100516; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100517 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100517 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100517 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100517 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100517 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249636
sample_title: CNTO1275UCO3001-100517 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100517; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100518 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100518 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100518 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100518 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100518 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249637
sample_title: CNTO1275UCO3001-100518 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100518; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100521 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100521 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100521 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100521 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100521 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249638
sample_title: CNTO1275UCO3001-100521 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100521; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100522 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100522 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100522 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100522 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100522 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249639
sample_title: CNTO1275UCO3001-100522 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100522; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100525 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100525 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100525 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100525 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100525 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249640
sample_title: CNTO1275UCO3001-100525 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100525; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100527 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100527 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100527 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100527 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100527 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249641
sample_title: CNTO1275UCO3001-100527 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100527; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100528 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100528 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100528 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100528 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100528 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249642
sample_title: CNTO1275UCO3001-100528 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100528; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100531 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100531 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100531 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100531 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100531 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249643
sample_title: CNTO1275UCO3001-100531 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100531; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100532 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100532 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100532 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100532 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100532 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249644
sample_title: CNTO1275UCO3001-100532 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100532; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100533 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100533 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100533 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100533 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100533 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249645
sample_title: CNTO1275UCO3001-100533 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100533; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100534 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100534 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100534 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100534 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100534 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249646
sample_title: CNTO1275UCO3001-100534 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100534; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100537 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100537 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100537 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100537 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100537 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249647
sample_title: CNTO1275UCO3001-100537 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100537; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100538 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100538 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100538 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100538 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100538 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249648
sample_title: CNTO1275UCO3001-100538 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100538; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100539 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100539 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100539 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100539 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100539 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249649
sample_title: CNTO1275UCO3001-100539 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100539; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100540 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100540 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100540 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100540 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100540 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249650
sample_title: CNTO1275UCO3001-100540 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100540; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100541 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100541 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100541 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100541 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100541 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249651
sample_title: CNTO1275UCO3001-100541 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100541; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100543 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100543 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100543 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100543 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100543 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249652
sample_title: CNTO1275UCO3001-100543 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100543; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100544 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100544 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100544 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100544 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100544 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249653
sample_title: CNTO1275UCO3001-100544 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100544; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100545 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100545 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100545 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100545 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100545 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249654
sample_title: CNTO1275UCO3001-100545 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100545; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100546 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100546 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100546 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100546 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100546 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249655
sample_title: CNTO1275UCO3001-100546 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100546; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100548 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100548 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100548 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100548 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100548 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249656
sample_title: CNTO1275UCO3001-100548 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100548; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100549 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100549 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100549 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100549 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100549 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249657
sample_title: CNTO1275UCO3001-100549 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100549; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100553 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100553 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100553 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100553 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100553 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249658
sample_title: CNTO1275UCO3001-100553 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100553; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100554 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100554 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100554 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100554 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100554 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249659
sample_title: CNTO1275UCO3001-100554 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100554; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100555 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100555 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100555 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100555 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100555 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249660
sample_title: CNTO1275UCO3001-100555 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100555; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100556 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100556 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100556 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100556 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100556 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249661
sample_title: CNTO1275UCO3001-100556 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100556; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100559 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100559 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100559 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100559 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100559 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249662
sample_title: CNTO1275UCO3001-100559 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100559; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100563 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100563 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100563 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100563 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100563 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249663
sample_title: CNTO1275UCO3001-100563 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100563; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100565 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100565 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100565 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100565 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100565 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249664
sample_title: CNTO1275UCO3001-100565 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100565; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100566 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100566 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100566 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100566 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100566 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249665
sample_title: CNTO1275UCO3001-100566 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100566; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100568 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100568 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100568 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100568 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100568 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249666
sample_title: CNTO1275UCO3001-100568 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100568; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100571 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100571 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100571 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100571 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100571 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249667
sample_title: CNTO1275UCO3001-100571 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100571; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100572 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100572 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100572 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100572 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100572 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249668
sample_title: CNTO1275UCO3001-100572 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100572; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100573 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100573 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100573 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100573 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100573 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249669
sample_title: CNTO1275UCO3001-100573 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100573; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100574 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100574 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100574 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100574 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100574 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249670
sample_title: CNTO1275UCO3001-100574 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100574; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100578 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100578 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100578 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100578 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100578 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249671
sample_title: CNTO1275UCO3001-100578 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100578; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100579 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100579 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100579 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100579 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100579 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249672
sample_title: CNTO1275UCO3001-100579 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100579; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100582 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100582 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100582 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100582 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100582 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249673
sample_title: CNTO1275UCO3001-100582 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100582; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100583 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100583 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100583 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100583 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100583 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249674
sample_title: CNTO1275UCO3001-100583 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100583; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100584 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100584 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100584 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100584 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100584 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249675
sample_title: CNTO1275UCO3001-100584 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100584; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100585 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100585 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100585 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100585 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100585 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249676
sample_title: CNTO1275UCO3001-100585 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100585; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100592 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100592 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100592 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100592 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100592 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249677
sample_title: CNTO1275UCO3001-100592 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100592; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100593 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100593 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100593 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100593 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100593 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249678
sample_title: CNTO1275UCO3001-100593 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100593; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100594 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100594 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100594 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100594 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100594 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249679
sample_title: CNTO1275UCO3001-100594 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100594; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100595 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100595 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100595 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100595 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100595 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249680
sample_title: CNTO1275UCO3001-100595 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100595; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100596 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100596 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100596 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100596 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100596 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249681
sample_title: CNTO1275UCO3001-100596 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100596; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100597 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100597 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100597 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100597 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100597 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249682
sample_title: CNTO1275UCO3001-100597 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100597; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100598 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100598 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100598 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100598 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100598 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249683
sample_title: CNTO1275UCO3001-100598 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100598; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100603 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100603 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100603 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100603 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100603 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249684
sample_title: CNTO1275UCO3001-100603 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100603; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100604 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100604 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100604 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100604 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100604 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249685
sample_title: CNTO1275UCO3001-100604 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100604; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100605 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100605 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100605 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100605 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100605 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249686
sample_title: CNTO1275UCO3001-100605 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100605; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100607 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100607 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100607 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100607 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100607 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249687
sample_title: CNTO1275UCO3001-100607 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100607; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100608 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100608 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100608 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100608 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100608 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249688
sample_title: CNTO1275UCO3001-100608 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100608; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100609 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100609 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100609 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100609 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100609 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249689
sample_title: CNTO1275UCO3001-100609 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100609; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100610 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100610 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100610 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100610 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100610 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249690
sample_title: CNTO1275UCO3001-100610 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100610; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100612 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100612 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100612 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100612 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100612 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249691
sample_title: CNTO1275UCO3001-100612 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100612; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100615 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100615 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100615 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100615 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100615 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249692
sample_title: CNTO1275UCO3001-100615 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100615; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100616 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100616 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100616 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100616 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100616 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249693
sample_title: CNTO1275UCO3001-100616 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100616; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100617 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100617 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100617 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100617 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100617 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249694
sample_title: CNTO1275UCO3001-100617 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100617; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100622 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100622 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100622 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100622 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100622 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249695
sample_title: CNTO1275UCO3001-100622 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100622; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100623 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100623 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100623 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100623 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100623 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249696
sample_title: CNTO1275UCO3001-100623 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100623; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100624 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100624 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100624 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100624 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100624 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249697
sample_title: CNTO1275UCO3001-100624 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100624; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100625 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100625 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100625 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100625 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100625 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249698
sample_title: CNTO1275UCO3001-100625 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100625; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100627 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100627 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100627 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100627 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100627 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249699
sample_title: CNTO1275UCO3001-100627 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100627; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100630 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100630 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100630 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100630 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100630 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249700
sample_title: CNTO1275UCO3001-100630 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100630; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100631 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100631 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100631 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100631 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100631 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249701
sample_title: CNTO1275UCO3001-100631 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100631; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100632 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100632 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100632 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100632 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100632 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249702
sample_title: CNTO1275UCO3001-100632 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100632; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100633 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100633 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100633 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100633 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100633 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249703
sample_title: CNTO1275UCO3001-100633 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100633; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100635 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100635 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100635 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100635 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100635 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249704
sample_title: CNTO1275UCO3001-100635 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100635; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100636 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100636 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100636 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100636 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100636 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249705
sample_title: CNTO1275UCO3001-100636 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100636; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100637 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100637 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100637 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100637 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100637 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249706
sample_title: CNTO1275UCO3001-100637 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100637; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100638 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100638 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100638 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100638 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100638 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249707
sample_title: CNTO1275UCO3001-100638 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100638; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100639 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100639 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100639 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100639 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100639 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249708
sample_title: CNTO1275UCO3001-100639 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100639; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100640 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100640 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100640 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100640 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100640 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249709
sample_title: CNTO1275UCO3001-100640 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100640; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100641 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100641 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100641 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100641 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100641 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249710
sample_title: CNTO1275UCO3001-100641 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100641; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100643 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100643 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100643 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100643 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100643 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249711
sample_title: CNTO1275UCO3001-100643 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100643; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100644 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100644 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100644 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100644 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100644 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249712
sample_title: CNTO1275UCO3001-100644 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100644; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
CNTO1275UCO3001-100646 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100646 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100646 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100646 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100646 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249713
sample_title: CNTO1275UCO3001-100646 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100646; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100648 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100648 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100648 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100648 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100648 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: NA; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249714
sample_title: CNTO1275UCO3001-100648 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100648; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: NA; clinical remission at week 8: N
CNTO1275UCO3001-100650 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100650 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100650 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100650 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100650 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249715
sample_title: CNTO1275UCO3001-100650 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100650; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100651 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100651 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100651 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100651 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100651 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249716
sample_title: CNTO1275UCO3001-100651 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100651; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100652 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100652 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100652 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100652 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100652 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249717
sample_title: CNTO1275UCO3001-100652 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100652; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100654 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100654 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100654 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100654 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100654 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249718
sample_title: CNTO1275UCO3001-100654 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100654; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100657 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100657 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100657 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100657 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100657 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249719
sample_title: CNTO1275UCO3001-100657 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100657; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100658 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100658 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100658 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100658 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100658 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249720
sample_title: CNTO1275UCO3001-100658 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100658; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100660 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100660 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100660 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100660 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100660 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249721
sample_title: CNTO1275UCO3001-100660 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100660; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100662 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100662 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100662 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100662 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100662 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249722
sample_title: CNTO1275UCO3001-100662 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100662; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100663 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100663 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100663 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100663 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100663 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249723
sample_title: CNTO1275UCO3001-100663 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100663; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100664 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100664 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100664 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100664 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100664 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249724
sample_title: CNTO1275UCO3001-100664 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100664; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100665 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100665 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100665 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100665 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100665 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249725
sample_title: CNTO1275UCO3001-100665 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100665; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100671 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100671 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100671 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100671 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100671 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249726
sample_title: CNTO1275UCO3001-100671 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100671; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100672 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100672 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100672 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100672 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100672 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249727
sample_title: CNTO1275UCO3001-100672 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100672; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100673 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100673 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100673 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100673 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100673 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249728
sample_title: CNTO1275UCO3001-100673 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100673; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100678 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100678 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100678 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100678 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100678 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249729
sample_title: CNTO1275UCO3001-100678 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100678; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100679 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100679 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100679 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100679 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100679 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249730
sample_title: CNTO1275UCO3001-100679 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100679; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100680 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100680 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100680 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100680 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100680 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249731
sample_title: CNTO1275UCO3001-100680 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100680; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100682 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100682 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100682 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100682 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100682 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249732
sample_title: CNTO1275UCO3001-100682 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100682; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100685 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100685 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100685 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100685 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100685 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249733
sample_title: CNTO1275UCO3001-100685 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100685; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100686 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100686 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100686 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100686 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100686 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249734
sample_title: CNTO1275UCO3001-100686 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100686; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100688 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100688 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100688 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100688 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100688 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249735
sample_title: CNTO1275UCO3001-100688 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100688; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100690 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100690 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100690 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100690 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100690 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249736
sample_title: CNTO1275UCO3001-100690 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100690; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100694 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100694 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100694 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100694 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100694 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249737
sample_title: CNTO1275UCO3001-100694 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100694; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100696 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100696 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100696 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100696 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100696 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249738
sample_title: CNTO1275UCO3001-100696 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100696; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100698 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100698 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100698 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100698 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100698 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249739
sample_title: CNTO1275UCO3001-100698 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100698; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100699 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100699 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100699 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100699 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100699 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249740
sample_title: CNTO1275UCO3001-100699 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100699; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100700 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100700 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100700 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100700 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100700 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249741
sample_title: CNTO1275UCO3001-100700 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100700; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100701 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100701 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100701 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100701 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100701 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249742
sample_title: CNTO1275UCO3001-100701 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100701; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100702 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100702 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100702 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100702 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100702 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249743
sample_title: CNTO1275UCO3001-100702 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100702; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100703 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100703 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100703 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100703 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100703 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249744
sample_title: CNTO1275UCO3001-100703 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100703; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100704 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100704 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100704 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100704 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100704 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249745
sample_title: CNTO1275UCO3001-100704 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100704; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100705 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100705 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100705 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100705 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100705 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249746
sample_title: CNTO1275UCO3001-100705 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100705; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100707 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100707 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100707 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100707 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100707 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249747
sample_title: CNTO1275UCO3001-100707 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100707; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100710 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100710 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100710 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100710 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100710 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249748
sample_title: CNTO1275UCO3001-100710 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100710; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100714 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100714 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100714 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100714 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100714 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249749
sample_title: CNTO1275UCO3001-100714 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100714; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100715 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100715 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100715 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100715 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100715 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249750
sample_title: CNTO1275UCO3001-100715 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100715; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100716 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100716 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100716 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100716 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100716 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249751
sample_title: CNTO1275UCO3001-100716 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100716; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100718 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100718 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100718 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100718 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100718 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249752
sample_title: CNTO1275UCO3001-100718 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100718; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100738 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100738 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100738 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100738 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100738 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249753
sample_title: CNTO1275UCO3001-100738 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100738; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100739 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100739 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100739 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100739 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100739 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249754
sample_title: CNTO1275UCO3001-100739 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100739; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100741 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100741 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100741 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100741 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100741 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249755
sample_title: CNTO1275UCO3001-100741 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100741; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100745 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100745 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100745 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100745 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100745 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249756
sample_title: CNTO1275UCO3001-100745 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100745; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100747 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100747 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100747 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100747 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100747 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249757
sample_title: CNTO1275UCO3001-100747 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100747; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100748 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100748 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100748 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100748 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100748 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249758
sample_title: CNTO1275UCO3001-100748 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100748; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100755 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100755 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100755 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100755 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100755 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249759
sample_title: CNTO1275UCO3001-100755 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100755; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100756 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100756 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100756 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100756 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100756 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249760
sample_title: CNTO1275UCO3001-100756 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100756; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100757 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100757 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100757 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100757 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100757 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: NA; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249761
sample_title: CNTO1275UCO3001-100757 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100757; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: NA; clinical remission at week 8: Y
CNTO1275UCO3001-100758 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100758 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100758 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100758 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100758 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249762
sample_title: CNTO1275UCO3001-100758 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100758; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100759 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100759 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100759 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100759 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100759 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249763
sample_title: CNTO1275UCO3001-100759 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100759; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100762 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100762 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100762 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100762 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100762 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249764
sample_title: CNTO1275UCO3001-100762 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100762; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100767 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100767 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100767 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100767 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100767 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249765
sample_title: CNTO1275UCO3001-100767 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100767; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100769 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100769 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100769 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100769 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100769 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249766
sample_title: CNTO1275UCO3001-100769 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100769; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100773 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100773 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100773 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100773 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100773 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249767
sample_title: CNTO1275UCO3001-100773 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100773; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100777 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100777 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100777 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100777 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100777 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249768
sample_title: CNTO1275UCO3001-100777 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100777; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100778 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100778 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100778 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100778 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100778 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249769
sample_title: CNTO1275UCO3001-100778 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100778; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100779 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100779 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100779 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100779 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100779 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249770
sample_title: CNTO1275UCO3001-100779 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100779; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100792 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100792 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100792 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100792 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100792 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249771
sample_title: CNTO1275UCO3001-100792 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100792; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100794 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100794 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100794 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100794 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100794 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249772
sample_title: CNTO1275UCO3001-100794 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100794; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100795 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100795 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100795 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100795 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100795 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249773
sample_title: CNTO1275UCO3001-100795 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100795; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100798 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100798 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100798 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100798 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100798 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249774
sample_title: CNTO1275UCO3001-100798 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100798; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100804 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100804 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100804 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100804 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100804 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249775
sample_title: CNTO1275UCO3001-100804 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100804; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100805 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100805 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100805 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100805 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100805 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249776
sample_title: CNTO1275UCO3001-100805 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100805; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100806 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100806 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100806 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100806 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100806 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249777
sample_title: CNTO1275UCO3001-100806 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100806; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100807 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100807 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100807 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100807 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100807 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249778
sample_title: CNTO1275UCO3001-100807 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100807; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100811 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100811 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100811 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100811 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100811 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249779
sample_title: CNTO1275UCO3001-100811 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100811; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100815 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100815 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100815 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100815 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100815 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249780
sample_title: CNTO1275UCO3001-100815 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100815; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100816 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100816 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100816 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100816 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100816 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249781
sample_title: CNTO1275UCO3001-100816 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100816; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100823 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100823 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100823 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100823 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100823 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249782
sample_title: CNTO1275UCO3001-100823 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100823; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100831 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100831 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100831 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100831 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100831 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249783
sample_title: CNTO1275UCO3001-100831 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100831; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100839 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100839 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100839 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100839 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100839 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249784
sample_title: CNTO1275UCO3001-100839 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100839; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100840 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100840 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100840 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100840 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100840 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249785
sample_title: CNTO1275UCO3001-100840 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100840; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100846 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100846 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100846 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100846 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100846 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249786
sample_title: CNTO1275UCO3001-100846 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100846; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100847 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100847 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100847 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100847 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100847 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249787
sample_title: CNTO1275UCO3001-100847 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100847; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100852 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100852 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100852 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100852 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100852 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249788
sample_title: CNTO1275UCO3001-100852 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100852; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100854 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100854 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100854 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100854 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100854 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249789
sample_title: CNTO1275UCO3001-100854 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100854; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100855 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100855 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100855 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100855 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100855 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249790
sample_title: CNTO1275UCO3001-100855 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100855; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100856 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100856 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100856 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100856 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100856 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249791
sample_title: CNTO1275UCO3001-100856 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100856; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100857 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100857 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100857 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100857 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100857 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249792
sample_title: CNTO1275UCO3001-100857 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100857; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100866 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100866 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100866 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100866 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100866 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249793
sample_title: CNTO1275UCO3001-100866 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100866; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100870 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100870 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100870 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100870 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100870 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249794
sample_title: CNTO1275UCO3001-100870 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100870; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100871 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100871 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100871 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100871 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100871 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249795
sample_title: CNTO1275UCO3001-100871 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100871; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-100875 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100875 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100875 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100875 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100875 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249796
sample_title: CNTO1275UCO3001-100875 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100875; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100876 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100876 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100876 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100876 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100876 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249797
sample_title: CNTO1275UCO3001-100876 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100876; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100881 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100881 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100881 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100881 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100881 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249798
sample_title: CNTO1275UCO3001-100881 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100881; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: Y
CNTO1275UCO3001-100882 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100882 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100882 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100882 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100882 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249799
sample_title: CNTO1275UCO3001-100882 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100882; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100885 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100885 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100885 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100885 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100885 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249800
sample_title: CNTO1275UCO3001-100885 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100885; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100886 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100886 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100886 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100886 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100886 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249801
sample_title: CNTO1275UCO3001-100886 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100886; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100891 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100891 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100891 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100891 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100891 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249802
sample_title: CNTO1275UCO3001-100891 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100891; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100894 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100894 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100894 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100894 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100894 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249803
sample_title: CNTO1275UCO3001-100894 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100894; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100895 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100895 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100895 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100895 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100895 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249804
sample_title: CNTO1275UCO3001-100895 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100895; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100898 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100898 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100898 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100898 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100898 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249805
sample_title: CNTO1275UCO3001-100898 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100898; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100899 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100899 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100899 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100899 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100899 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249806
sample_title: CNTO1275UCO3001-100899 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100899; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (390 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100902 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100902 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100902 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100902 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100902 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249807
sample_title: CNTO1275UCO3001-100902 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100902; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100904 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100904 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100904 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100904 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100904 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249808
sample_title: CNTO1275UCO3001-100904 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100904; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100906 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100906 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100906 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100906 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100906 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249809
sample_title: CNTO1275UCO3001-100906 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100906; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100914 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100914 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100914 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100914 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100914 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249810
sample_title: CNTO1275UCO3001-100914 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100914; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100916 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100916 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100916 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100916 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100916 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249811
sample_title: CNTO1275UCO3001-100916 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100916; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (260 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100920 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100920 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100920 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100920 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100920 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249812
sample_title: CNTO1275UCO3001-100920 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100920; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100924 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100924 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100924 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100924 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100924 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249813
sample_title: CNTO1275UCO3001-100924 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100924; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100929 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100929 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100929 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100929 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100929 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249814
sample_title: CNTO1275UCO3001-100929 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100929; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100940 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100940 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100940 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100940 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100940 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249815
sample_title: CNTO1275UCO3001-100940 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100940; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100942 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100942 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100942 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100942 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
- CNTO1275UCO3001-100942 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 1...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249816
sample_title: CNTO1275UCO3001-100942 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100942; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 130 mg IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-100968 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100968 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100968 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100968 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
- CNTO1275UCO3001-100968 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249817
sample_title: CNTO1275UCO3001-100968 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100968; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Ustekinumab 6 mg/kg (520 mg); mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100996 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100996 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100996 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100996 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100996 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249818
sample_title: CNTO1275UCO3001-100996 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100996; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-100999 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100999 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100999 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-100999 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-100999 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249819
sample_title: CNTO1275UCO3001-100999 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-100999; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-101103 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101103 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249820
sample_title: CNTO1275UCO3001-101103 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101103; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-101172 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101172 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249821
sample_title: CNTO1275UCO3001-101172 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101172; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-101196 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101196 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101196 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101196 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101196 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249822
sample_title: CNTO1275UCO3001-101196 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101196; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: N; clinical remission at week 8: N
CNTO1275UCO3001-101212 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101212 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249823
sample_title: CNTO1275UCO3001-101212 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101212; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: NA; clinical remission at week 8: Y
CNTO1275UCO3001-101236 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101236 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249824
sample_title: CNTO1275UCO3001-101236 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101236; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
CNTO1275UCO3001-101250 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101250 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101250 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101250 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101250 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249825
sample_title: CNTO1275UCO3001-101250 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101250; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: N
CNTO1275UCO3001-101302 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- CNTO1275UCO3001-101302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
- CNTO1275UCO3001-101302 colon biopsy week 0 colon biopsy tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; m...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249826
sample_title: CNTO1275UCO3001-101302 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: CNTO1275UCO3001-101302; visit: WEEK I-0; diagnosis: ulcerative colitis; treatment: Placebo IV; mucosal healing at week 8: Y; clinical remission at week 8: Y
HC-1 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-1 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-1 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-1 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-1 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249827
sample_title: HC-1 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-1; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-2 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-2 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-2 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-2 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-2 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249828
sample_title: HC-2 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-2; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-3 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-3 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-3 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-3 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-3 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249829
sample_title: HC-3 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-3; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-4 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-4 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-4 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-4 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-4 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249830
sample_title: HC-4 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-4; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-5 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-5 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-5 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-5 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-5 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249831
sample_title: HC-5 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-5; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-6 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-6 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-6 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-6 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-6 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249832
sample_title: HC-6 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-6; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-7 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-7 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-7 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-7 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-7 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249833
sample_title: HC-7 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-7; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-8 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-8 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-8 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-8 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-8 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249834
sample_title: HC-8 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-8; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-9 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-9 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-9 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-9 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
- HC-9 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remissio...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249835
sample_title: HC-9 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-9; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-10 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-10 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-10 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-10 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-10 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249836
sample_title: HC-10 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-10; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-11 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-11 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-11 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-11 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-11 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249837
sample_title: HC-11 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-11; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-12 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-12 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-12 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-12 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-12 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249838
sample_title: HC-12 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-12; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-13 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-13 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-13 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-13 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-13 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249839
sample_title: HC-13 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-13; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-14 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-14 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-14 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-14 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-14 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249840
sample_title: HC-14 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-14; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-15 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-15 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-15 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-15 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-15 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249841
sample_title: HC-15 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-15; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-16 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-16 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-16 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-16 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-16 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249842
sample_title: HC-16 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-16; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-17 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-17 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-17 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-17 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-17 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249843
sample_title: HC-17 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-17; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
HC-18 colon biopsy week 0
Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.
Requirements and decision evidence
-
organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
-
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
-
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- HC-18 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-18 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
-
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
-
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- HC-18 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
- HC-18 colon biopsy week 0 colon biopsy tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remiss...
Source metadata
- Source name
- colon biopsy
- Characteristics
- tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA
- Description
- Not reported
- Indexed organism evidence
- INFERRED · PARENT_INHERITED: Not reported
- Indexed assay evidence
- INFERRED · PARENT_INHERITED: Not reported
- Source
- GEO
Original indexed metadata
sample_accession: GSM6249844
sample_title: HC-18 colon biopsy week 0
source_name: colon biopsy
characteristics: tissue: colon; donor id: HC-18; visit: WEEK I-0; diagnosis: healthy control; treatment: NA; mucosal healing at week 8: NA; clinical remission at week 8: NA